RNA–Protein interactions for RNA: ENST00000485645.5

SMC4-216, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-216ENST00000485645 LRRIQ1Q96JM4 1722 aa27.94■■■□□ 2.06
SMC4-216ENST00000485645 POGZQ7Z3K3 1410 aa27.93■■■□□ 2.06
SMC4-216ENST00000485645 ZFYVE16Q7Z3T8 1539 aa27.93■■■□□ 2.06
SMC4-216ENST00000485645 CASKIN1Q8WXD9 1431 aa27.92■■■□□ 2.06
SMC4-216ENST00000485645 YEATS2Q9ULM3 1422 aa27.92■■■□□ 2.06
SMC4-216ENST00000485645 MADDQ8WXG6 1647 aa27.91■■■□□ 2.06
SMC4-216ENST00000485645 PCF11O94913 1555 aaKnown RBP27.89■■■□□ 2.05
SMC4-216ENST00000485645 CCDC18Q5T9S5 1454 aa27.89■■■□□ 2.05
SMC4-216ENST00000485645 ARHGAP5Q13017 1502 aa27.87■■■□□ 2.05
SMC4-216ENST00000485645 RIMS1Q86UR5 1692 aaKnown RBP27.82■■■□□ 2.04
SMC4-216ENST00000485645 ZNF518AQ6AHZ1 1483 aa27.81■■■□□ 2.04
SMC4-216ENST00000485645 FYCO1Q9BQS8 1478 aa27.81■■■□□ 2.04
SMC4-216ENST00000485645 SIGLEC1Q9BZZ2 1709 aa27.8■■■□□ 2.04
SMC4-216ENST00000485645 ATP10AO60312 1499 aa27.79■■■□□ 2.04
SMC4-216ENST00000485645 MLECQ14165 292 aa27.79■■■□□ 2.04
SMC4-216ENST00000485645 CDC42BPBQ9Y5S2 1711 aa27.78■■■□□ 2.04
SMC4-216ENST00000485645 AFAP1Q8N556 730 aa27.77■■■□□ 2.04
SMC4-216ENST00000485645 ILDR1Q86SU0 546 aaPredicted RBP27.76■■■□□ 2.03
SMC4-216ENST00000485645 C9orf84Q5VXU9 1444 aa27.75■■■□□ 2.03
SMC4-216ENST00000485645 MYT1LQ9UL68 1186 aa27.75■■■□□ 2.03
SMC4-216ENST00000485645 PREX2Q70Z35 1606 aa27.74■■■□□ 2.03
SMC4-216ENST00000485645 KDM5CP41229 1560 aa27.73■■■□□ 2.03
SMC4-216ENST00000485645 PLPPR3Q6T4P5 718 aa27.72■■■□□ 2.03
SMC4-216ENST00000485645 LMTK3Q96Q04 1460 aa27.69■■■□□ 2.02
SMC4-216ENST00000485645 FER1L4A9Z1Z3 1794 aa27.68■■■□□ 2.02
SMC4-216ENST00000485645 ABCC1P33527 1531 aa27.67■■■□□ 2.02
SMC4-216ENST00000485645 CDC42BPAQ5VT25 1732 aa27.66■■■□□ 2.02
SMC4-216ENST00000485645 ARHGEF12Q9NZN5 1544 aa27.66■■■□□ 2.02
SMC4-216ENST00000485645 TRAPPC8Q9Y2L5 1435 aa27.66■■■□□ 2.02
SMC4-216ENST00000485645 MLH3Q9UHC1 1453 aa27.65■■■□□ 2.02
SMC4-216ENST00000485645 DIP2CQ9Y2E4 1556 aa27.63■■■□□ 2.01
SMC4-216ENST00000485645 ITSN2Q9NZM3 1697 aa27.62■■■□□ 2.01
SMC4-216ENST00000485645 ZNF777Q9ULD5 760 aaPredicted RBP27.62■■■□□ 2.01
SMC4-216ENST00000485645 GPATCH8Q9UKJ3 1502 aaKnown RBP27.59■■■□□ 2.01
SMC4-216ENST00000485645 REREQ9P2R6 1566 aa27.58■■■□□ 2.01
SMC4-216ENST00000485645 ABCA6Q8N139 1617 aa27.58■■■□□ 2.01
SMC4-216ENST00000485645 MTUS2Q5JR59 1369 aa27.57■■■□□ 2
SMC4-216ENST00000485645 HSPA2P54652 639 aa27.56■■■□□ 2
SMC4-216ENST00000485645 CEP162Q5TB80 1403 aa27.54■■■□□ 2
SMC4-216ENST00000485645 SAMD9LQ8IVG5 1584 aa27.54■■■□□ 2
SMC4-216ENST00000485645 CCNB3Q8WWL7 1395 aa27.54■■■□□ 2
SMC4-216ENST00000485645 CFDP1Q9UEE9 299 aaPredicted RBP27.54■■■□□ 2
SMC4-216ENST00000485645 CEBPAP49715 358 aaPredicted RBP27.53■■■□□ 2
SMC4-216ENST00000485645 KIDINS220Q9ULH0 1771 aa27.52■■■□□ 2
SMC4-216ENST00000485645 HNRNPMP52272 730 aaKnown RBP eCLIP27.51■■□□□ 1.992e-9■□□□□ 8.7
SMC4-216ENST00000485645 AGLP35573 1532 aa27.51■■□□□ 1.99
SMC4-216ENST00000485645 SYCP2Q9BX26 1530 aa27.51■■□□□ 1.99
SMC4-216ENST00000485645 SPAG9O60271 1321 aaKnown RBP27.48■■□□□ 1.99
SMC4-216ENST00000485645 ESF1Q9H501 851 aaKnown RBP27.48■■□□□ 1.99
SMC4-216ENST00000485645 PLEKHH2Q8IVE3 1493 aa27.48■■□□□ 1.99
SMC4-216ENST00000485645 KIAA1107Q9UPP5 1409 aa27.47■■□□□ 1.99
SMC4-216ENST00000485645 PREX1Q8TCU6 1659 aa27.44■■□□□ 1.98
SMC4-216ENST00000485645 EHBP1L1Q8N3D4 1523 aa27.44■■□□□ 1.98
SMC4-216ENST00000485645 SETD1BQ9UPS6 1966 aaKnown RBP27.41■■□□□ 1.98
SMC4-216ENST00000485645 FBXO41Q8TF61 875 aa27.41■■□□□ 1.98
SMC4-216ENST00000485645 ATP7AQ04656 1500 aa27.39■■□□□ 1.98
SMC4-216ENST00000485645 TIAM1Q13009 1591 aa27.39■■□□□ 1.97
SMC4-216ENST00000485645 UHRF1BP1Q6BDS2 1440 aa27.37■■□□□ 1.97
SMC4-216ENST00000485645 C3P01024 1663 aa27.36■■□□□ 1.97
SMC4-216ENST00000485645 CNTLNQ9NXG0 1405 aa27.36■■□□□ 1.97
SMC4-216ENST00000485645 ZNF644Q9H582 1327 aaPredicted RBP27.36■■□□□ 1.97
SMC4-216ENST00000485645 INO80Q9ULG1 1556 aaPredicted RBP27.35■■□□□ 1.97
SMC4-216ENST00000485645 LOC105371045A0A1W2PR82 267 aa27.34■■□□□ 1.97
SMC4-216ENST00000485645 SUPT6HQ7KZ85 1726 aaKnown RBP27.33■■□□□ 1.96
SMC4-216ENST00000485645 A2MP01023 1474 aa27.32■■□□□ 1.96
SMC4-216ENST00000485645 MBD5Q9P267 1494 aa27.29■■□□□ 1.96
SMC4-216ENST00000485645 PLXNC1O60486 1568 aa27.28■■□□□ 1.96
SMC4-216ENST00000485645 NCOA2Q15596 1464 aa27.28■■□□□ 1.96
SMC4-216ENST00000485645 DMRT2Q9Y5R5 561 aa27.26■■□□□ 1.95
SMC4-216ENST00000485645 VPS8Q8N3P4 1428 aa27.25■■□□□ 1.95
SMC4-216ENST00000485645 ZMYM3Q14202 1370 aa27.25■■□□□ 1.95
SMC4-216ENST00000485645 MROH2AA6NES4 1674 aa27.24■■□□□ 1.95
SMC4-216ENST00000485645 GGT6Q6P531 493 aa27.24■■□□□ 1.95
SMC4-216ENST00000485645 RTEL1-TNFRSF6BF6WH68 1400 aa27.24■■□□□ 1.95
SMC4-216ENST00000485645 ADGBQ8N7X0 1667 aa27.24■■□□□ 1.95
SMC4-216ENST00000485645 STRCQ7RTU9 1775 aa27.22■■□□□ 1.95
SMC4-216ENST00000485645 RSPH4AQ5TD94 716 aa27.21■■□□□ 1.95
SMC4-216ENST00000485645 NPATQ14207 1427 aa27.21■■□□□ 1.95
SMC4-216ENST00000485645 CERKQ8TCT0 537 aa27.2■■□□□ 1.94
SMC4-216ENST00000485645 CAMSAP2Q08AD1 1489 aa27.19■■□□□ 1.94
SMC4-216ENST00000485645 PPP6R1Q9UPN7 881 aa27.19■■□□□ 1.94
SMC4-216ENST00000485645 CCDC141Q6ZP82 1450 aa27.19■■□□□ 1.94
SMC4-216ENST00000485645 CLTCQ00610 1675 aaKnown RBP27.18■■□□□ 1.94
SMC4-216ENST00000485645 LRRC9Q6ZRR7 1453 aa27.17■■□□□ 1.94
SMC4-216ENST00000485645 DHX29Q7Z478 1369 aaKnown RBP27.16■■□□□ 1.94
SMC4-216ENST00000485645 PTPRTO14522 1441 aa27.11■■□□□ 1.93
SMC4-216ENST00000485645 TSPY4P0CV99 314 aa27.1■■□□□ 1.93
SMC4-216ENST00000485645 TSPY10P0CW01 314 aa27.1■■□□□ 1.93
SMC4-216ENST00000485645 KANK4Q5T7N3 995 aaPredicted RBP27.1■■□□□ 1.93
SMC4-216ENST00000485645 MAP3K1Q13233 1512 aa27.1■■□□□ 1.93
SMC4-216ENST00000485645 PTPRKQ15262 1439 aa27.09■■□□□ 1.93
SMC4-216ENST00000485645 KIF3BO15066 747 aa27.09■■□□□ 1.93
SMC4-216ENST00000485645 ARHGEF5Q12774 1597 aa27.09■■□□□ 1.93
SMC4-216ENST00000485645 NCOA1Q15788 1441 aa27.08■■□□□ 1.93
SMC4-216ENST00000485645 CAMSAP1Q5T5Y3 1602 aa27.05■■□□□ 1.92
SMC4-216ENST00000485645 MYO3AQ8NEV4 1616 aa27.02■■□□□ 1.92
SMC4-216ENST00000485645 ZNF142P52746 1687 aaPredicted RBP27■■□□□ 1.91
SMC4-216ENST00000485645 MYOM3Q5VTT5 1437 aa26.99■■□□□ 1.91
SMC4-216ENST00000485645 MIA2Q96PC5 1412 aa26.99■■□□□ 1.91
SMC4-216ENST00000485645 WASHC2CQ9Y4E1 1318 aa26.99■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms