RNA–Protein interactions for RNA: ENST00000484441.1

CCDC66-219, Transcript of coiled-coil domain containing 66, humanhuman

TSL 1 (best)

Gene CCDC66, Length 302 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC66-219ENST00000484441 C2orf72A6NCS6 295 aa13.58□□□□□ -0.24
CCDC66-219ENST00000484441 CRISPLD2Q9H0B8 497 aa13.58□□□□□ -0.24
CCDC66-219ENST00000484441 GPHNQ9NQX3 736 aaPredicted RBP13.55□□□□□ -0.24
CCDC66-219ENST00000484441 PLCB2Q00722 1185 aa13.54□□□□□ -0.24
CCDC66-219ENST00000484441 CADPS2Q86UW7 1296 aa13.54□□□□□ -0.24
CCDC66-219ENST00000484441 TMC2Q8TDI7 906 aa13.54□□□□□ -0.24
CCDC66-219ENST00000484441 NCKAP5LQ9HCH0 1330 aa13.54□□□□□ -0.24
CCDC66-219ENST00000484441 SNPHO15079 494 aa13.52□□□□□ -0.25
CCDC66-219ENST00000484441 HOXB3P14651 431 aaPredicted RBP13.51□□□□□ -0.25
CCDC66-219ENST00000484441 FOXK1P85037 733 aa13.5□□□□□ -0.25
CCDC66-219ENST00000484441 LCE2DQ5TA82 110 aaPredicted RBP13.49□□□□□ -0.25
CCDC66-219ENST00000484441 PDE4AP27815 886 aa13.47□□□□□ -0.25
CCDC66-219ENST00000484441 MFSD10Q14728 455 aa13.46□□□□□ -0.25
CCDC66-219ENST00000484441 DSG2Q14126 1118 aa13.45□□□□□ -0.26
CCDC66-219ENST00000484441 DOK7Q18PE1 504 aa13.44□□□□□ -0.26
CCDC66-219ENST00000484441 ST18O60284 1047 aa13.41□□□□□ -0.26
CCDC66-219ENST00000484441 SLC34A2O95436 690 aa13.41□□□□□ -0.26
CCDC66-219ENST00000484441 TSHZ2Q9NRE2 1034 aa13.41□□□□□ -0.26
CCDC66-219ENST00000484441 PPP1R15BQ5SWA1 713 aa13.4□□□□□ -0.26
CCDC66-219ENST00000484441 PLPP6Q8IY26 295 aa13.4□□□□□ -0.26
CCDC66-219ENST00000484441 LARP6Q9BRS8 491 aaKnown RBP13.4□□□□□ -0.26
CCDC66-219ENST00000484441 DDX27Q96GQ7 796 aaKnown RBP13.39□□□□□ -0.27
CCDC66-219ENST00000484441 ZSWIM6Q9HCJ5 1215 aa13.39□□□□□ -0.27
CCDC66-219ENST00000484441 FAM163AQ96GL9 167 aaPredicted RBP13.38□□□□□ -0.27
CCDC66-219ENST00000484441 RIMBP2O15034 1052 aa13.35□□□□□ -0.27
CCDC66-219ENST00000484441 HOXB1P14653 301 aaPredicted RBP13.33□□□□□ -0.28
CCDC66-219ENST00000484441 ZNF710Q8N1W2 664 aa13.33□□□□□ -0.28
CCDC66-219ENST00000484441 GPR153Q6NV75 609 aa13.32□□□□□ -0.28
CCDC66-219ENST00000484441 PTCD2Q8WV60 388 aaKnown RBP13.32□□□□□ -0.28
CCDC66-219ENST00000484441 CAMK2BQ13554 666 aa13.3□□□□□ -0.28
CCDC66-219ENST00000484441 OXER1Q8TDS5 423 aa13.28□□□□□ -0.28
CCDC66-219ENST00000484441 PCDHGA4Q9Y5G9 962 aa13.27□□□□□ -0.29
CCDC66-219ENST00000484441 KDM4FA0A1W2PPD8 638 aa13.24□□□□□ -0.29
CCDC66-219ENST00000484441 ARSIQ5FYB1 569 aa13.24□□□□□ -0.29
CCDC66-219ENST00000484441 EMILIN3Q9NT22 766 aa13.24□□□□□ -0.29
CCDC66-219ENST00000484441 HAP1P54257 671 aaPredicted RBP13.23□□□□□ -0.29
CCDC66-219ENST00000484441 POTEMA6NI47 508 aa13.21□□□□□ -0.29
CCDC66-219ENST00000484441 POTEGQ6S5H5 508 aa13.21□□□□□ -0.29
CCDC66-219ENST00000484441 KHSRPQ92945 711 aaKnown RBP eCLIP13.21□□□□□ -0.29
CCDC66-219ENST00000484441 MARVELD3Q96A59 401 aa13.21□□□□□ -0.29
CCDC66-219ENST00000484441 EMP3P54852 163 aa13.19□□□□□ -0.3
CCDC66-219ENST00000484441 WDR70Q9NW82 654 aa13.19□□□□□ -0.3
CCDC66-219ENST00000484441 UPF1Q92900 1129 aaKnown RBP eCLIP13.18□□□□□ -0.3
CCDC66-219ENST00000484441 TBC1D12O60347 775 aa13.17□□□□□ -0.3
CCDC66-219ENST00000484441 NUDT7P0C024 238 aa13.17□□□□□ -0.3
CCDC66-219ENST00000484441 E2F4Q16254 413 aa13.17□□□□□ -0.3
CCDC66-219ENST00000484441 ARIH1Q9Y4X5 557 aaPredicted RBP13.17□□□□□ -0.3
CCDC66-219ENST00000484441 POTEB3A0JP26 581 aa13.12□□□□□ -0.31
CCDC66-219ENST00000484441 POTEBQ6S5H4 581 aa13.12□□□□□ -0.31
CCDC66-219ENST00000484441 KDM2AQ9Y2K7 1162 aa13.12□□□□□ -0.31
CCDC66-219ENST00000484441 ZNF316A6NFI3 1004 aaPredicted RBP13.11□□□□□ -0.31
CCDC66-219ENST00000484441 HS3ST6Q96QI5 342 aa13.11□□□□□ -0.31
CCDC66-219ENST00000484441 ANO8Q9HCE9 1232 aaPredicted RBP13.11□□□□□ -0.31
CCDC66-219ENST00000484441 FAM205CA6NFA0 338 aa13.1□□□□□ -0.31
CCDC66-219ENST00000484441 VSIG10Q8N0Z9 540 aa13.1□□□□□ -0.31
CCDC66-219ENST00000484441 DPYSL4O14531 572 aa13.09□□□□□ -0.31
CCDC66-219ENST00000484441 MAP3K9P80192 1104 aa13.09□□□□□ -0.31
CCDC66-219ENST00000484441 LHX6Q9UPM6 363 aa13.09□□□□□ -0.31
CCDC66-219ENST00000484441 ERBB3P21860 1342 aa13.09□□□□□ -0.31
CCDC66-219ENST00000484441 EVI5O60447 810 aa13.08□□□□□ -0.32
CCDC66-219ENST00000484441 KCNV2Q8TDN2 545 aa13.06□□□□□ -0.32
CCDC66-219ENST00000484441 PDIA6Q15084 440 aa13.05□□□□□ -0.32
CCDC66-219ENST00000484441 VARS2Q5ST30 1063 aaKnown RBP13.05□□□□□ -0.32
CCDC66-219ENST00000484441 PSDA5PKW4 1024 aaPredicted RBP13.03□□□□□ -0.32
CCDC66-219ENST00000484441 P3H3Q8IVL6 736 aa13.03□□□□□ -0.32
CCDC66-219ENST00000484441 ARHGEF1Q92888 912 aaKnown RBP13.03□□□□□ -0.32
CCDC66-219ENST00000484441 PCDH10Q9P2E7 1040 aa13.02□□□□□ -0.33
CCDC66-219ENST00000484441 SPDYE16A6NNV3 312 aaPredicted RBP13□□□□□ -0.33
CCDC66-219ENST00000484441 ZNF687Q8N1G0 1237 aa13□□□□□ -0.33
CCDC66-219ENST00000484441 PTGER2P43116 358 aa12.99□□□□□ -0.33
CCDC66-219ENST00000484441 CDAN1Q8IWY9 1227 aa12.99□□□□□ -0.33
CCDC66-219ENST00000484441 FOSBP53539 338 aa12.98□□□□□ -0.33
CCDC66-219ENST00000484441 JPH4Q96JJ6 628 aa12.98□□□□□ -0.33
CCDC66-219ENST00000484441 PPP4R3BQ5MIZ7 849 aa12.94□□□□□ -0.34
CCDC66-219ENST00000484441 KRTAP3-3Q9BYR6 98 aa12.94□□□□□ -0.34
CCDC66-219ENST00000484441 KRTAP3-2Q9BYR7 98 aa12.94□□□□□ -0.34
CCDC66-219ENST00000484441 PHF14O94880 888 aa12.92□□□□□ -0.34
CCDC66-219ENST00000484441 POTEEQ6S8J3 1075 aa12.92□□□□□ -0.34
CCDC66-219ENST00000484441 ZNF454Q8N9F8 522 aa12.92□□□□□ -0.34
CCDC66-219ENST00000484441 PCDHGA10Q9Y5H3 936 aa12.91□□□□□ -0.34
CCDC66-219ENST00000484441 PBX2P40425 430 aa12.9□□□□□ -0.34
CCDC66-219ENST00000484441 ZDHHC16Q969W1 377 aa12.88□□□□□ -0.35
CCDC66-219ENST00000484441 BCL2L12Q9HB09 334 aa12.88□□□□□ -0.35
CCDC66-219ENST00000484441 EPAS1Q99814 870 aa12.87□□□□□ -0.35
CCDC66-219ENST00000484441 DDX12PQ92771 950 aa12.86□□□□□ -0.35
CCDC66-219ENST00000484441 FBXW7Q969H0 707 aa12.86□□□□□ -0.35
CCDC66-219ENST00000484441 TYW1BQ6NUM6 668 aa12.85□□□□□ -0.35
CCDC66-219ENST00000484441 ADAM33Q9BZ11 813 aa12.84□□□□□ -0.35
CCDC66-219ENST00000484441 ARHGAP33O14559 1287 aa12.83□□□□□ -0.36
CCDC66-219ENST00000484441 SLC24A1O60721 1099 aa12.82□□□□□ -0.36
CCDC66-219ENST00000484441 AXIN2Q9Y2T1 843 aa12.8□□□□□ -0.36
CCDC66-219ENST00000484441 EN1Q05925 392 aaPredicted RBP12.79□□□□□ -0.36
CCDC66-219ENST00000484441 NBR1Q14596 966 aa12.79□□□□□ -0.36
CCDC66-219ENST00000484441 SEMA3EO15041 775 aa12.78□□□□□ -0.36
CCDC66-219ENST00000484441 OSBPP22059 807 aa12.78□□□□□ -0.36
CCDC66-219ENST00000484441 MLLT3P42568 568 aaPredicted RBP12.78□□□□□ -0.36
CCDC66-219ENST00000484441 PRIM1P49642 420 aaKnown RBP12.78□□□□□ -0.36
CCDC66-219ENST00000484441 LSM11P83369 360 aaKnown RBP eCLIP12.78□□□□□ -0.36
CCDC66-219ENST00000484441 GRXCR2A6NFK2 248 aa12.77□□□□□ -0.37
CCDC66-219ENST00000484441 PTPREP23469 700 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms