RNA–Protein interactions for RNA: ENST00000483275.1

VARS-226, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-226ENST00000483275 LMTK3Q96Q04 1460 aa23.1■■□□□ 1.29
VARS-226ENST00000483275 FMN1Q68DA7 1419 aa23.09■■□□□ 1.29
VARS-226ENST00000483275 POGZQ7Z3K3 1410 aa23.09■■□□□ 1.29
VARS-226ENST00000483275 CHIC1Q5VXU3 224 aa23.09■■□□□ 1.29
VARS-226ENST00000483275 FER1L4A9Z1Z3 1794 aa23.09■■□□□ 1.29
VARS-226ENST00000483275 PLCH2O75038 1416 aa23.08■■□□□ 1.28
VARS-226ENST00000483275 SCAPERQ9BY12 1400 aa23.08■■□□□ 1.28
VARS-226ENST00000483275 MLECQ14165 292 aa23.03■■□□□ 1.28
VARS-226ENST00000483275 MAGI2Q86UL8 1455 aa23.01■■□□□ 1.27
VARS-226ENST00000483275 ARHGAP5Q13017 1502 aa23■■□□□ 1.27
VARS-226ENST00000483275 TROQ12816 1431 aaPredicted RBP22.99■■□□□ 1.27
VARS-226ENST00000483275 CDC42BPBQ9Y5S2 1711 aa22.98■■□□□ 1.27
VARS-226ENST00000483275 HSPA2P54652 639 aa22.97■■□□□ 1.27
VARS-226ENST00000483275 CLIP1P30622 1438 aa22.94■■□□□ 1.26
VARS-226ENST00000483275 C9orf84Q5VXU9 1444 aa22.94■■□□□ 1.26
VARS-226ENST00000483275 ARHGEF12Q9NZN5 1544 aa22.93■■□□□ 1.26
VARS-226ENST00000483275 ATP10AO60312 1499 aa22.93■■□□□ 1.26
VARS-226ENST00000483275 EFCAB2Q5VUJ9 269 aa22.93■■□□□ 1.26
VARS-226ENST00000483275 CDK11AQ9UQ88 783 aaPredicted RBP22.93■■□□□ 1.26
VARS-226ENST00000483275 PREX2Q70Z35 1606 aa22.93■■□□□ 1.26
VARS-226ENST00000483275 KDM5CP41229 1560 aa22.93■■□□□ 1.26
VARS-226ENST00000483275 ZNF518AQ6AHZ1 1483 aa22.92■■□□□ 1.26
VARS-226ENST00000483275 ABCA6Q8N139 1617 aa22.91■■□□□ 1.26
VARS-226ENST00000483275 DIP2CQ9Y2E4 1556 aa22.91■■□□□ 1.26
VARS-226ENST00000483275 ITSN2Q9NZM3 1697 aa22.89■■□□□ 1.25
VARS-226ENST00000483275 CDC42BPAQ5VT25 1732 aa22.88■■□□□ 1.25
VARS-226ENST00000483275 AFAP1Q8N556 730 aa22.88■■□□□ 1.25
VARS-226ENST00000483275 FBXO41Q8TF61 875 aa22.88■■□□□ 1.25
VARS-226ENST00000483275 ABCC1P33527 1531 aa22.87■■□□□ 1.25
VARS-226ENST00000483275 CASKIN1Q8WXD9 1431 aa22.87■■□□□ 1.25
VARS-226ENST00000483275 PREX1Q8TCU6 1659 aa22.87■■□□□ 1.25
VARS-226ENST00000483275 CCDC18Q5T9S5 1454 aa22.85■■□□□ 1.25
VARS-226ENST00000483275 CEBPAP49715 358 aaPredicted RBP22.84■■□□□ 1.25
VARS-226ENST00000483275 MYT1LQ9UL68 1186 aa22.84■■□□□ 1.25
VARS-226ENST00000483275 TRAPPC8Q9Y2L5 1435 aa22.82■■□□□ 1.24
VARS-226ENST00000483275 FYCO1Q9BQS8 1478 aa22.8■■□□□ 1.24
VARS-226ENST00000483275 KIDINS220Q9ULH0 1771 aa22.79■■□□□ 1.24
VARS-226ENST00000483275 C3P01024 1663 aa22.78■■□□□ 1.24
VARS-226ENST00000483275 REREQ9P2R6 1566 aa22.78■■□□□ 1.24
VARS-226ENST00000483275 SAMD9LQ8IVG5 1584 aa22.76■■□□□ 1.23
VARS-226ENST00000483275 MLH3Q9UHC1 1453 aa22.76■■□□□ 1.23
VARS-226ENST00000483275 STRCQ7RTU9 1775 aa22.74■■□□□ 1.23
VARS-226ENST00000483275 SYCP2Q9BX26 1530 aa22.74■■□□□ 1.23
VARS-226ENST00000483275 ZNF777Q9ULD5 760 aaPredicted RBP22.7■■□□□ 1.22
VARS-226ENST00000483275 AGLP35573 1532 aa22.69■■□□□ 1.22
VARS-226ENST00000483275 SUPT6HQ7KZ85 1726 aaKnown RBP22.68■■□□□ 1.22
VARS-226ENST00000483275 GPATCH8Q9UKJ3 1502 aaKnown RBP22.67■■□□□ 1.22
VARS-226ENST00000483275 UHRF1BP1Q6BDS2 1440 aa22.67■■□□□ 1.22
VARS-226ENST00000483275 SETD1BQ9UPS6 1966 aaKnown RBP22.65■■□□□ 1.22
VARS-226ENST00000483275 CERKQ8TCT0 537 aa22.63■■□□□ 1.21
VARS-226ENST00000483275 INO80Q9ULG1 1556 aaPredicted RBP22.63■■□□□ 1.21
VARS-226ENST00000483275 ATP7AQ04656 1500 aa22.62■■□□□ 1.21
VARS-226ENST00000483275 HNRNPMP52272 730 aaKnown RBP eCLIP22.61■■□□□ 1.21
VARS-226ENST00000483275 CLTCQ00610 1675 aaKnown RBP22.59■■□□□ 1.21
VARS-226ENST00000483275 ESF1Q9H501 851 aaKnown RBP22.59■■□□□ 1.21
VARS-226ENST00000483275 TIAM1Q13009 1591 aa22.59■■□□□ 1.21
VARS-226ENST00000483275 MROH2AA6NES4 1674 aa22.58■■□□□ 1.21
VARS-226ENST00000483275 SPAG9O60271 1321 aaKnown RBP22.57■■□□□ 1.2
VARS-226ENST00000483275 CCNB3Q8WWL7 1395 aa22.57■■□□□ 1.2
VARS-226ENST00000483275 PLXNC1O60486 1568 aa22.57■■□□□ 1.2
VARS-226ENST00000483275 MTUS2Q5JR59 1369 aa22.56■■□□□ 1.2
VARS-226ENST00000483275 CFDP1Q9UEE9 299 aaPredicted RBP22.54■■□□□ 1.2
VARS-226ENST00000483275 CNTLNQ9NXG0 1405 aa22.54■■□□□ 1.2
VARS-226ENST00000483275 EHBP1L1Q8N3D4 1523 aa22.52■■□□□ 1.2
VARS-226ENST00000483275 PLEKHH2Q8IVE3 1493 aa22.52■■□□□ 1.2
VARS-226ENST00000483275 ZNF644Q9H582 1327 aaPredicted RBP22.52■■□□□ 1.2
VARS-226ENST00000483275 A2MP01023 1474 aa22.51■■□□□ 1.19
VARS-226ENST00000483275 ADGBQ8N7X0 1667 aa22.51■■□□□ 1.19
VARS-226ENST00000483275 MYO3AQ8NEV4 1616 aa22.5■■□□□ 1.19
VARS-226ENST00000483275 KIAA1107Q9UPP5 1409 aa22.5■■□□□ 1.19
VARS-226ENST00000483275 CAMSAP1Q5T5Y3 1602 aa22.49■■□□□ 1.19
VARS-226ENST00000483275 NCOA1Q15788 1441 aa22.48■■□□□ 1.19
VARS-226ENST00000483275 CEP162Q5TB80 1403 aa22.48■■□□□ 1.19
VARS-226ENST00000483275 DMRT2Q9Y5R5 561 aa22.47■■□□□ 1.19
VARS-226ENST00000483275 ZMYM3Q14202 1370 aa22.46■■□□□ 1.19
VARS-226ENST00000483275 PTPRTO14522 1441 aa22.46■■□□□ 1.19
VARS-226ENST00000483275 ZNF142P52746 1687 aaPredicted RBP22.46■■□□□ 1.19
VARS-226ENST00000483275 NPATQ14207 1427 aa22.45■■□□□ 1.18
VARS-226ENST00000483275 LTBP4Q8N2S1 1624 aa22.44■■□□□ 1.18
VARS-226ENST00000483275 MBD5Q9P267 1494 aa22.43■■□□□ 1.18
VARS-226ENST00000483275 GGT6Q6P531 493 aa22.42■■□□□ 1.18
VARS-226ENST00000483275 CEP170BQ9Y4F5 1589 aaPredicted RBP22.41■■□□□ 1.18
VARS-226ENST00000483275 PTPRKQ15262 1439 aa22.4■■□□□ 1.18
VARS-226ENST00000483275 CAMSAP2Q08AD1 1489 aa22.39■■□□□ 1.17
VARS-226ENST00000483275 NCKAP5LQ9HCH0 1330 aa22.38■■□□□ 1.17
VARS-226ENST00000483275 NCOA2Q15596 1464 aa22.38■■□□□ 1.17
VARS-226ENST00000483275 CCDC141Q6ZP82 1450 aa22.34■■□□□ 1.17
VARS-226ENST00000483275 RTEL1-TNFRSF6BF6WH68 1400 aa22.31■■□□□ 1.16
VARS-226ENST00000483275 ZNF335Q9H4Z2 1342 aaPredicted RBP22.31■■□□□ 1.16
VARS-226ENST00000483275 DNMT1P26358 1616 aaKnown RBP22.3■■□□□ 1.16
VARS-226ENST00000483275 PLA2R1Q13018 1463 aa22.29■■□□□ 1.16
VARS-226ENST00000483275 TCOF1Q13428 1488 aaKnown RBP22.28■■□□□ 1.16
VARS-226ENST00000483275 DHX29Q7Z478 1369 aaKnown RBP22.28■■□□□ 1.16
VARS-226ENST00000483275 KDM5DQ9BY66 1539 aa22.27■■□□□ 1.16
VARS-226ENST00000483275 POLR1AO95602 1720 aaPredicted RBP22.27■■□□□ 1.16
VARS-226ENST00000483275 DISP3Q9P2K9 1392 aa22.26■■□□□ 1.15
VARS-226ENST00000483275 KIF3BO15066 747 aa22.26■■□□□ 1.15
VARS-226ENST00000483275 A2ML1A8K2U0 1454 aa22.26■■□□□ 1.15
VARS-226ENST00000483275 ARHGEF5Q12774 1597 aa22.25■■□□□ 1.15
VARS-226ENST00000483275 SPATA31D1Q6ZQQ2 1576 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms