RNA–Protein interactions for RNA: ENST00000482996.5

VARS-225, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-225ENST00000482996 POGZQ7Z3K3 1410 aa22.13■■□□□ 1.13
VARS-225ENST00000482996 MTUS2Q5JR59 1369 aa22.12■■□□□ 1.13
VARS-225ENST00000482996 ZMYM4Q5VZL5 1548 aa22.11■■□□□ 1.13
VARS-225ENST00000482996 ARHGEF40Q8TER5 1519 aa22.11■■□□□ 1.13
VARS-225ENST00000482996 MAGI2Q86UL8 1455 aa22.09■■□□□ 1.13
VARS-225ENST00000482996 PREX2Q70Z35 1606 aa22.09■■□□□ 1.13
VARS-225ENST00000482996 ARID4BQ4LE39 1312 aaPredicted RBP22.08■■□□□ 1.13
VARS-225ENST00000482996 ZFYVE16Q7Z3T8 1539 aa22.07■■□□□ 1.12
VARS-225ENST00000482996 CDC42BPBQ9Y5S2 1711 aa22.07■■□□□ 1.12
VARS-225ENST00000482996 ZNF518AQ6AHZ1 1483 aa22.06■■□□□ 1.12
VARS-225ENST00000482996 VPS8Q8N3P4 1428 aa22.06■■□□□ 1.12
VARS-225ENST00000482996 CCNB3Q8WWL7 1395 aa22.04■■□□□ 1.12
VARS-225ENST00000482996 YEATS2Q9ULM3 1422 aa22.04■■□□□ 1.12
VARS-225ENST00000482996 CDC42BPAQ5VT25 1732 aa22.03■■□□□ 1.12
VARS-225ENST00000482996 EHBP1L1Q8N3D4 1523 aa22.03■■□□□ 1.12
VARS-225ENST00000482996 GPATCH8Q9UKJ3 1502 aaKnown RBP22.03■■□□□ 1.12
VARS-225ENST00000482996 AFAP1Q8N556 730 aa22.02■■□□□ 1.12
VARS-225ENST00000482996 MYT1LQ9UL68 1186 aa22.01■■□□□ 1.11
VARS-225ENST00000482996 ZNF777Q9ULD5 760 aaPredicted RBP22.01■■□□□ 1.11
VARS-225ENST00000482996 ABCC1P33527 1531 aa22.01■■□□□ 1.11
VARS-225ENST00000482996 CFDP1Q9UEE9 299 aaPredicted RBP22■■□□□ 1.11
VARS-225ENST00000482996 KDM5CP41229 1560 aa21.98■■□□□ 1.11
VARS-225ENST00000482996 ATP10AO60312 1499 aa21.97■■□□□ 1.11
VARS-225ENST00000482996 BCORL1Q5H9F3 1711 aa21.97■■□□□ 1.11
VARS-225ENST00000482996 ADAMTSL3P82987 1691 aa21.96■■□□□ 1.11
VARS-225ENST00000482996 TRAPPC8Q9Y2L5 1435 aa21.96■■□□□ 1.11
VARS-225ENST00000482996 ARHGEF12Q9NZN5 1544 aa21.96■■□□□ 1.11
VARS-225ENST00000482996 TIAM1Q13009 1591 aa21.95■■□□□ 1.11
VARS-225ENST00000482996 C9orf84Q5VXU9 1444 aa21.95■■□□□ 1.1
VARS-225ENST00000482996 ITSN2Q9NZM3 1697 aa21.95■■□□□ 1.1
VARS-225ENST00000482996 PLEKHH2Q8IVE3 1493 aa21.94■■□□□ 1.1
VARS-225ENST00000482996 HECW2Q9P2P5 1572 aa21.94■■□□□ 1.1
VARS-225ENST00000482996 SAMD9LQ8IVG5 1584 aa21.93■■□□□ 1.1
VARS-225ENST00000482996 MLH3Q9UHC1 1453 aa21.93■■□□□ 1.1
VARS-225ENST00000482996 KIAA1107Q9UPP5 1409 aa21.91■■□□□ 1.1
VARS-225ENST00000482996 SYCP2Q9BX26 1530 aa21.9■■□□□ 1.1
VARS-225ENST00000482996 SUPT6HQ7KZ85 1726 aaKnown RBP21.9■■□□□ 1.1
VARS-225ENST00000482996 HNRNPMP52272 730 aaKnown RBP eCLIP21.9■■□□□ 1.1
VARS-225ENST00000482996 PTPRMP28827 1452 aa21.9■■□□□ 1.1
VARS-225ENST00000482996 NCOA2Q15596 1464 aa21.9■■□□□ 1.1
VARS-225ENST00000482996 MADDQ8WXG6 1647 aa21.89■■□□□ 1.09
VARS-225ENST00000482996 MLECQ14165 292 aa21.89■■□□□ 1.09
VARS-225ENST00000482996 MAP3K1Q13233 1512 aa21.88■■□□□ 1.09
VARS-225ENST00000482996 LRRC9Q6ZRR7 1453 aa21.88■■□□□ 1.09
VARS-225ENST00000482996 SPAG9O60271 1321 aaKnown RBP21.87■■□□□ 1.09
VARS-225ENST00000482996 APLP2Q06481 763 aa21.87■■□□□ 1.09
VARS-225ENST00000482996 DIP2CQ9Y2E4 1556 aa21.87■■□□□ 1.09
VARS-225ENST00000482996 SIGLEC1Q9BZZ2 1709 aa21.86■■□□□ 1.09
VARS-225ENST00000482996 ABCA6Q8N139 1617 aa21.84■■□□□ 1.09
VARS-225ENST00000482996 ZNF644Q9H582 1327 aaPredicted RBP21.83■■□□□ 1.09
VARS-225ENST00000482996 REREQ9P2R6 1566 aa21.83■■□□□ 1.09
VARS-225ENST00000482996 RIMS1Q86UR5 1692 aaKnown RBP21.82■■□□□ 1.08
VARS-225ENST00000482996 KIDINS220Q9ULH0 1771 aa21.82■■□□□ 1.08
VARS-225ENST00000482996 KANK4Q5T7N3 995 aaPredicted RBP21.81■■□□□ 1.08
VARS-225ENST00000482996 ATP7AQ04656 1500 aa21.78■■□□□ 1.08
VARS-225ENST00000482996 MBD5Q9P267 1494 aa21.77■■□□□ 1.08
VARS-225ENST00000482996 AGLP35573 1532 aa21.77■■□□□ 1.08
VARS-225ENST00000482996 FER1L4A9Z1Z3 1794 aa21.76■■□□□ 1.07
VARS-225ENST00000482996 PLPPR3Q6T4P5 718 aa21.76■■□□□ 1.07
VARS-225ENST00000482996 CAMSAP2Q08AD1 1489 aa21.76■■□□□ 1.07
VARS-225ENST00000482996 RSPH4AQ5TD94 716 aa21.75■■□□□ 1.07
VARS-225ENST00000482996 INO80Q9ULG1 1556 aaPredicted RBP21.74■■□□□ 1.07
VARS-225ENST00000482996 ESF1Q9H501 851 aaKnown RBP21.73■■□□□ 1.07
VARS-225ENST00000482996 CCDC141Q6ZP82 1450 aa21.72■■□□□ 1.07
VARS-225ENST00000482996 ILDR1Q86SU0 546 aaPredicted RBP21.72■■□□□ 1.07
VARS-225ENST00000482996 RTEL1-TNFRSF6BF6WH68 1400 aa21.72■■□□□ 1.07
VARS-225ENST00000482996 MYOM3Q5VTT5 1437 aa21.71■■□□□ 1.07
VARS-225ENST00000482996 A2MP01023 1474 aa21.71■■□□□ 1.07
VARS-225ENST00000482996 MIA2Q96PC5 1412 aa21.7■■□□□ 1.06
VARS-225ENST00000482996 TSPY4P0CV99 314 aa21.67■■□□□ 1.06
VARS-225ENST00000482996 TSPY10P0CW01 314 aa21.67■■□□□ 1.06
VARS-225ENST00000482996 ARHGEF5Q12774 1597 aa21.66■■□□□ 1.06
VARS-225ENST00000482996 ADGBQ8N7X0 1667 aa21.65■■□□□ 1.06
VARS-225ENST00000482996 PLXNC1O60486 1568 aa21.65■■□□□ 1.06
VARS-225ENST00000482996 CNTLNQ9NXG0 1405 aa21.64■■□□□ 1.06
VARS-225ENST00000482996 CEBPAP49715 358 aaPredicted RBP21.64■■□□□ 1.05
VARS-225ENST00000482996 LMTK3Q96Q04 1460 aa21.62■■□□□ 1.05
VARS-225ENST00000482996 DHX29Q7Z478 1369 aaKnown RBP21.61■■□□□ 1.05
VARS-225ENST00000482996 GGT6Q6P531 493 aa21.6■■□□□ 1.05
VARS-225ENST00000482996 PPP6R1Q9UPN7 881 aa21.58■■□□□ 1.05
VARS-225ENST00000482996 FGD6Q6ZV73 1430 aa21.55■■□□□ 1.04
VARS-225ENST00000482996 SETD1BQ9UPS6 1966 aaKnown RBP21.55■■□□□ 1.04
VARS-225ENST00000482996 PTPN23Q9H3S7 1636 aa21.55■■□□□ 1.04
VARS-225ENST00000482996 C3P01024 1663 aa21.54■■□□□ 1.04
VARS-225ENST00000482996 MAST1Q9Y2H9 1570 aa21.54■■□□□ 1.04
VARS-225ENST00000482996 KIF3BO15066 747 aa21.54■■□□□ 1.04
VARS-225ENST00000482996 HSPA2P54652 639 aa21.54■■□□□ 1.04
VARS-225ENST00000482996 ZMYM3Q14202 1370 aa21.53■■□□□ 1.04
VARS-225ENST00000482996 UHRF1BP1Q6BDS2 1440 aa21.53■■□□□ 1.04
VARS-225ENST00000482996 PREX1Q8TCU6 1659 aa21.53■■□□□ 1.04
VARS-225ENST00000482996 MROH2AA6NES4 1674 aa21.52■■□□□ 1.04
VARS-225ENST00000482996 TCOF1Q13428 1488 aaKnown RBP21.5■■□□□ 1.03
VARS-225ENST00000482996 CLTCQ00610 1675 aaKnown RBP21.49■■□□□ 1.03
VARS-225ENST00000482996 ABCC5O15440 1437 aa21.48■■□□□ 1.03
VARS-225ENST00000482996 NPATQ14207 1427 aa21.48■■□□□ 1.03
VARS-225ENST00000482996 SHANK2Q9UPX8 1470 aa21.48■■□□□ 1.03
VARS-225ENST00000482996 DAPK1P53355 1430 aa21.46■■□□□ 1.03
VARS-225ENST00000482996 FAM135AQ9P2D6 1515 aa21.45■■□□□ 1.02
VARS-225ENST00000482996 WASHC2CQ9Y4E1 1318 aa21.44■■□□□ 1.02
VARS-225ENST00000482996 DNMT1P26358 1616 aaKnown RBP21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 122 ms