RNA–Protein interactions for RNA: ENST00000480022.1

CHD6-208, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

TSL 2

Gene CHD6, Length 2,829 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-208ENST00000480022 PLEKHD1A6NEE1 506 aa15.28■□□□□ 0.04
CHD6-208ENST00000480022 CDK11AQ9UQ88 783 aaPredicted RBP15.28■□□□□ 0.04
CHD6-208ENST00000480022 KANK4Q5T7N3 995 aaPredicted RBP15.27■□□□□ 0.03
CHD6-208ENST00000480022 ERICH6BQ5W0A0 696 aa15.27■□□□□ 0.03
CHD6-208ENST00000480022 MAPKBP1O60336 1514 aa15.26■□□□□ 0.03
CHD6-208ENST00000480022 CFAP43Q8NDM7 1665 aa15.26■□□□□ 0.03
CHD6-208ENST00000480022 MAGI3Q5TCQ9 1506 aa15.26■□□□□ 0.03
CHD6-208ENST00000480022 WDR7Q9Y4E6 1490 aa15.25■□□□□ 0.03
CHD6-208ENST00000480022 LRRC9Q6ZRR7 1453 aa15.24■□□□□ 0.03
CHD6-208ENST00000480022 MTUS2Q5JR59 1369 aa15.24■□□□□ 0.03
CHD6-208ENST00000480022 TROQ12816 1431 aaPredicted RBP15.24■□□□□ 0.03
CHD6-208ENST00000480022 DHX57Q6P158 1386 aaKnown RBP15.23■□□□□ 0.03
CHD6-208ENST00000480022 SALL2Q9Y467 1007 aaPredicted RBP15.2■□□□□ 0.02
CHD6-208ENST00000480022 EHBP1L1Q8N3D4 1523 aa15.2■□□□□ 0.02
CHD6-208ENST00000480022 ABCC10Q5T3U5 1492 aa15.17■□□□□ 0.02
CHD6-208ENST00000480022 KIF14Q15058 1648 aa15.16■□□□□ 0.02
CHD6-208ENST00000480022 FAM69CQ0P6D2 419 aa15.15■□□□□ 0.02
CHD6-208ENST00000480022 DIP2BQ9P265 1576 aa15.14■□□□□ 0.01
CHD6-208ENST00000480022 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.14■□□□□ 0.01
CHD6-208ENST00000480022 NCOA2Q15596 1464 aa15.13■□□□□ 0.01
CHD6-208ENST00000480022 UBE2Q2Q8WVN8 375 aa15.13■□□□□ 0.01
CHD6-208ENST00000480022 SUPT6HQ7KZ85 1726 aaKnown RBP15.11■□□□□ 0.01
CHD6-208ENST00000480022 GLI2P10070 1586 aa15.11■□□□□ 0.01
CHD6-208ENST00000480022 TTC37Q6PGP7 1564 aa15.11■□□□□ 0.01
CHD6-208ENST00000480022 ABCA9Q8IUA7 1624 aa15.1■□□□□ 0.01
CHD6-208ENST00000480022 PLEKHG5O94827 1062 aa15.1■□□□□ 0.01
CHD6-208ENST00000480022 TRHP20396 242 aaPredicted RBP15.09■□□□□ 0.01
CHD6-208ENST00000480022 ARXQ96QS3 562 aa15.09■□□□□ 0.01
CHD6-208ENST00000480022 PHLDB1Q86UU1 1377 aa15.09■□□□□ 0.01
CHD6-208ENST00000480022 CCNB3Q8WWL7 1395 aa15.09■□□□□ 0.01
CHD6-208ENST00000480022 TRIM52Q96A61 297 aa15.08■□□□□ 0.01
CHD6-208ENST00000480022 CD109Q6YHK3 1445 aa15.08■□□□□ 0.01
CHD6-208ENST00000480022 CCDC136Q96JN2 1154 aa15.08■□□□□ 0
CHD6-208ENST00000480022 GPATCH8Q9UKJ3 1502 aaKnown RBP15.07■□□□□ 0
CHD6-208ENST00000480022 PLCH2O75038 1416 aa15.06■□□□□ 0
CHD6-208ENST00000480022 KIF13AQ9H1H9 1805 aa15.05■□□□□ 0
CHD6-208ENST00000480022 NBR1Q14596 966 aa15.05■□□□□ 0
CHD6-208ENST00000480022 MAP3K4Q9Y6R4 1608 aa15.05■□□□□ -0
CHD6-208ENST00000480022 CCER2I3L3R5 266 aa15.05■□□□□ -0
CHD6-208ENST00000480022 NOP58Q9Y2X3 529 aaKnown RBP15.05■□□□□ -0
CHD6-208ENST00000480022 MYOM3Q5VTT5 1437 aa15.04■□□□□ -0
CHD6-208ENST00000480022 DDX10Q13206 875 aaKnown RBP15.04■□□□□ -0
CHD6-208ENST00000480022 CFDP1Q9UEE9 299 aaPredicted RBP15.02■□□□□ -0
CHD6-208ENST00000480022 CDC42BPAQ5VT25 1732 aa15.01□□□□□ -0.01
CHD6-208ENST00000480022 PREX2Q70Z35 1606 aa15.01□□□□□ -0.01
CHD6-208ENST00000480022 ARHGAP5Q13017 1502 aa15.01□□□□□ -0.01
CHD6-208ENST00000480022 MYO5CQ9NQX4 1742 aa15□□□□□ -0.01
CHD6-208ENST00000480022 ARAP3Q8WWN8 1544 aa15□□□□□ -0.01
CHD6-208ENST00000480022 EFCAB2Q5VUJ9 269 aa15□□□□□ -0.01
CHD6-208ENST00000480022 FGD6Q6ZV73 1430 aa14.99□□□□□ -0.01
CHD6-208ENST00000480022 MIA2Q96PC5 1412 aa14.99□□□□□ -0.01
CHD6-208ENST00000480022 FANCAO15360 1455 aa14.99□□□□□ -0.01
CHD6-208ENST00000480022 ZNF777Q9ULD5 760 aaPredicted RBP14.99□□□□□ -0.01
CHD6-208ENST00000480022 ITSN2Q9NZM3 1697 aa14.99□□□□□ -0.01
CHD6-208ENST00000480022 CDC42BPBQ9Y5S2 1711 aa14.98□□□□□ -0.01
CHD6-208ENST00000480022 ZNF644Q9H582 1327 aaPredicted RBP14.98□□□□□ -0.01
CHD6-208ENST00000480022 IL27Q8NEV9 243 aa14.98□□□□□ -0.01
CHD6-208ENST00000480022 PPRC1Q5VV67 1664 aaKnown RBP14.97□□□□□ -0.01
CHD6-208ENST00000480022 RTL5Q5HYW3 569 aaPredicted RBP14.97□□□□□ -0.01
CHD6-208ENST00000480022 PPP1R15AO75807 674 aaPredicted RBP14.97□□□□□ -0.01
CHD6-208ENST00000480022 TEX14Q8IWB6 1497 aa14.96□□□□□ -0.01
CHD6-208ENST00000480022 RTN4Q9NQC3 1192 aaKnown RBP14.96□□□□□ -0.01
CHD6-208ENST00000480022 ANP32CO43423 234 aa14.96□□□□□ -0.02
CHD6-208ENST00000480022 PLPPR3Q6T4P5 718 aa14.96□□□□□ -0.02
CHD6-208ENST00000480022 NEO1Q92859 1461 aa14.95□□□□□ -0.02
CHD6-208ENST00000480022 IRX6P78412 446 aaPredicted RBP14.95□□□□□ -0.02
CHD6-208ENST00000480022 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.95□□□□□ -0.02
CHD6-208ENST00000480022 AKNAQ7Z591 1439 aa14.95□□□□□ -0.02
CHD6-208ENST00000480022 RRBP1Q9P2E9 1410 aaKnown RBP14.95□□□□□ -0.02
CHD6-208ENST00000480022 TSPOAP1O95153 1857 aa14.95□□□□□ -0.02
CHD6-208ENST00000480022 PAK3O75914 559 aaPredicted RBP14.94□□□□□ -0.02
CHD6-208ENST00000480022 SAMD9LQ8IVG5 1584 aa14.94□□□□□ -0.02
CHD6-208ENST00000480022 PPP4R2Q9NY27 417 aa14.94□□□□□ -0.02
CHD6-208ENST00000480022 CAMSAP2Q08AD1 1489 aa14.94□□□□□ -0.02
CHD6-208ENST00000480022 TCOF1Q13428 1488 aaKnown RBP14.93□□□□□ -0.02
CHD6-208ENST00000480022 PTPN23Q9H3S7 1636 aa14.93□□□□□ -0.02
CHD6-208ENST00000480022 FAM50AQ14320 339 aaKnown RBP14.93□□□□□ -0.02
CHD6-208ENST00000480022 CFAP74Q9C0B2 1584 aa14.92□□□□□ -0.02
CHD6-208ENST00000480022 ADGRL1O94910 1474 aa14.91□□□□□ -0.02
CHD6-208ENST00000480022 HNRNPMP52272 730 aaKnown RBP eCLIP14.91□□□□□ -0.02
CHD6-208ENST00000480022 KIAA1107Q9UPP5 1409 aa14.91□□□□□ -0.02
CHD6-208ENST00000480022 ARHGEF12Q9NZN5 1544 aa14.91□□□□□ -0.02
CHD6-208ENST00000480022 SCAPERQ9BY12 1400 aa14.91□□□□□ -0.02
CHD6-208ENST00000480022 ABCC1P33527 1531 aa14.9□□□□□ -0.02
CHD6-208ENST00000480022 PLEKHH2Q8IVE3 1493 aa14.9□□□□□ -0.02
CHD6-208ENST00000480022 SYCP2Q9BX26 1530 aa14.89□□□□□ -0.03
CHD6-208ENST00000480022 MBD5Q9P267 1494 aa14.89□□□□□ -0.03
CHD6-208ENST00000480022 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.89□□□□□ -0.03
CHD6-208ENST00000480022 PODXL2Q9NZ53 605 aa14.88□□□□□ -0.03
CHD6-208ENST00000480022 TRAPPC8Q9Y2L5 1435 aa14.87□□□□□ -0.03
CHD6-208ENST00000480022 COL17A1Q9UMD9 1497 aaPredicted RBP14.87□□□□□ -0.03
CHD6-208ENST00000480022 RAPGEF3O95398 923 aa14.86□□□□□ -0.03
CHD6-208ENST00000480022 DENND4BO75064 1496 aaPredicted RBP14.86□□□□□ -0.03
CHD6-208ENST00000480022 AFAP1Q8N556 730 aa14.86□□□□□ -0.03
CHD6-208ENST00000480022 POGZQ7Z3K3 1410 aa14.85□□□□□ -0.03
CHD6-208ENST00000480022 ABCC5O15440 1437 aa14.84□□□□□ -0.03
CHD6-208ENST00000480022 RSPH4AQ5TD94 716 aa14.84□□□□□ -0.03
CHD6-208ENST00000480022 ARHGEF5Q12774 1597 aa14.84□□□□□ -0.03
CHD6-208ENST00000480022 CCDC141Q6ZP82 1450 aa14.84□□□□□ -0.03
CHD6-208ENST00000480022 DAPK1P53355 1430 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms