RNA–Protein interactions for RNA: ENST00000479958.6

COMMD3-212, Transcript of COMM domain containing 3, humanhuman

TSL 2

Gene COMMD3, Length 1,443 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-212ENST00000479958 TMC2Q8TDI7 906 aa14.33□□□□□ -0.11
COMMD3-212ENST00000479958 TMEM92Q6UXU6 159 aa14.32□□□□□ -0.12
COMMD3-212ENST00000479958 POTEGQ6S5H5 508 aa14.31□□□□□ -0.12
COMMD3-212ENST00000479958 C2orf72A6NCS6 295 aa14.26□□□□□ -0.13
COMMD3-212ENST00000479958 DOK7Q18PE1 504 aa14.26□□□□□ -0.13
COMMD3-212ENST00000479958 PAXIP1Q6ZW49 1069 aaPredicted RBP14.26□□□□□ -0.13
COMMD3-212ENST00000479958 CFAP44Q96MT7 982 aa14.25□□□□□ -0.13
COMMD3-212ENST00000479958 KIF3CO14782 793 aa14.24□□□□□ -0.13
COMMD3-212ENST00000479958 RIMBP2O15034 1052 aa14.24□□□□□ -0.13
COMMD3-212ENST00000479958 ZNF710Q8N1W2 664 aa14.24□□□□□ -0.13
COMMD3-212ENST00000479958 ST18O60284 1047 aa14.22□□□□□ -0.13
COMMD3-212ENST00000479958 GPHNQ9NQX3 736 aaPredicted RBP14.22□□□□□ -0.13
COMMD3-212ENST00000479958 PDE4AP27815 886 aa14.21□□□□□ -0.13
COMMD3-212ENST00000479958 HOXB3P14651 431 aaPredicted RBP14.18□□□□□ -0.14
COMMD3-212ENST00000479958 FOXK1P85037 733 aa14.15□□□□□ -0.14
COMMD3-212ENST00000479958 PCDH10Q9P2E7 1040 aa14.15□□□□□ -0.14
COMMD3-212ENST00000479958 ZSWIM6Q9HCJ5 1215 aa14.15□□□□□ -0.14
COMMD3-212ENST00000479958 LCE2DQ5TA82 110 aaPredicted RBP14.13□□□□□ -0.15
COMMD3-212ENST00000479958 CRISPLD2Q9H0B8 497 aa14.13□□□□□ -0.15
COMMD3-212ENST00000479958 PLPP6Q8IY26 295 aa14.12□□□□□ -0.15
COMMD3-212ENST00000479958 LARP6Q9BRS8 491 aaKnown RBP14.1□□□□□ -0.15
COMMD3-212ENST00000479958 DSG2Q14126 1118 aa14.09□□□□□ -0.15
COMMD3-212ENST00000479958 HOXB1P14653 301 aaPredicted RBP14.08□□□□□ -0.15
COMMD3-212ENST00000479958 NCKAP5LQ9HCH0 1330 aa14.08□□□□□ -0.16
COMMD3-212ENST00000479958 SLC34A2O95436 690 aa14.07□□□□□ -0.16
COMMD3-212ENST00000479958 PPP1R15BQ5SWA1 713 aa14.06□□□□□ -0.16
COMMD3-212ENST00000479958 DDX27Q96GQ7 796 aaKnown RBP14.06□□□□□ -0.16
COMMD3-212ENST00000479958 CADPS2Q86UW7 1296 aa14.05□□□□□ -0.16
COMMD3-212ENST00000479958 EMP3P54852 163 aa14.04□□□□□ -0.16
COMMD3-212ENST00000479958 MARVELD3Q96A59 401 aa14.04□□□□□ -0.16
COMMD3-212ENST00000479958 TBC1D12O60347 775 aa14.03□□□□□ -0.16
COMMD3-212ENST00000479958 GPR153Q6NV75 609 aa14.02□□□□□ -0.16
COMMD3-212ENST00000479958 ARSIQ5FYB1 569 aa14.01□□□□□ -0.17
COMMD3-212ENST00000479958 MFSD10Q14728 455 aa13.99□□□□□ -0.17
COMMD3-212ENST00000479958 PTCD2Q8WV60 388 aaKnown RBP13.98□□□□□ -0.17
COMMD3-212ENST00000479958 PCDHGA4Q9Y5G9 962 aa13.98□□□□□ -0.17
COMMD3-212ENST00000479958 PLCB2Q00722 1185 aa13.96□□□□□ -0.18
COMMD3-212ENST00000479958 WDR70Q9NW82 654 aa13.96□□□□□ -0.18
COMMD3-212ENST00000479958 ERBB3P21860 1342 aa13.96□□□□□ -0.18
COMMD3-212ENST00000479958 FAM205CA6NFA0 338 aa13.95□□□□□ -0.18
COMMD3-212ENST00000479958 NUDT7P0C024 238 aa13.9□□□□□ -0.18
COMMD3-212ENST00000479958 KHSRPQ92945 711 aaKnown RBP eCLIP13.9□□□□□ -0.181e-11■■□□□ 14
COMMD3-212ENST00000479958 TSHZ2Q9NRE2 1034 aa13.9□□□□□ -0.18
COMMD3-212ENST00000479958 OXER1Q8TDS5 423 aa13.9□□□□□ -0.19
COMMD3-212ENST00000479958 UPF1Q92900 1129 aaKnown RBP eCLIP13.9□□□□□ -0.19
COMMD3-212ENST00000479958 HS3ST6Q96QI5 342 aa13.89□□□□□ -0.19
COMMD3-212ENST00000479958 CDAN1Q8IWY9 1227 aa13.88□□□□□ -0.19
COMMD3-212ENST00000479958 ZNF316A6NFI3 1004 aaPredicted RBP13.87□□□□□ -0.19
COMMD3-212ENST00000479958 MAP3K9P80192 1104 aa13.87□□□□□ -0.19
COMMD3-212ENST00000479958 VARS2Q5ST30 1063 aaKnown RBP13.84□□□□□ -0.19
COMMD3-212ENST00000479958 PSDA5PKW4 1024 aaPredicted RBP13.82□□□□□ -0.2
COMMD3-212ENST00000479958 CAMK2BQ13554 666 aa13.82□□□□□ -0.2
COMMD3-212ENST00000479958 LHX6Q9UPM6 363 aa13.81□□□□□ -0.2
COMMD3-212ENST00000479958 E2F4Q16254 413 aa13.81□□□□□ -0.2
COMMD3-212ENST00000479958 EMILIN3Q9NT22 766 aa13.8□□□□□ -0.2
COMMD3-212ENST00000479958 KDM4FA0A1W2PPD8 638 aa13.78□□□□□ -0.2
COMMD3-212ENST00000479958 POTEB3A0JP26 581 aa13.78□□□□□ -0.2
COMMD3-212ENST00000479958 HAP1P54257 671 aaPredicted RBP13.78□□□□□ -0.2
COMMD3-212ENST00000479958 POTEBQ6S5H4 581 aa13.78□□□□□ -0.2
COMMD3-212ENST00000479958 ZNF687Q8N1G0 1237 aa13.77□□□□□ -0.21
COMMD3-212ENST00000479958 EVI5O60447 810 aa13.76□□□□□ -0.21
COMMD3-212ENST00000479958 ANO8Q9HCE9 1232 aaPredicted RBP13.73□□□□□ -0.21
COMMD3-212ENST00000479958 DPYSL4O14531 572 aa13.71□□□□□ -0.22
COMMD3-212ENST00000479958 PPP4R3BQ5MIZ7 849 aa13.7□□□□□ -0.22
COMMD3-212ENST00000479958 SPDYE16A6NNV3 312 aaPredicted RBP13.66□□□□□ -0.22
COMMD3-212ENST00000479958 PBX2P40425 430 aa13.66□□□□□ -0.22
COMMD3-212ENST00000479958 ZNF454Q8N9F8 522 aa13.65□□□□□ -0.22
COMMD3-212ENST00000479958 ARIH1Q9Y4X5 557 aaPredicted RBP13.65□□□□□ -0.22
COMMD3-212ENST00000479958 KCNH8Q96L42 1107 aa13.63□□□□□ -0.23
COMMD3-212ENST00000479958 FOSBP53539 338 aa13.62□□□□□ -0.23
COMMD3-212ENST00000479958 JPH4Q96JJ6 628 aa13.62□□□□□ -0.23
COMMD3-212ENST00000479958 KRTAP3-3Q9BYR6 98 aa13.62□□□□□ -0.23
COMMD3-212ENST00000479958 KRTAP3-2Q9BYR7 98 aa13.62□□□□□ -0.23
COMMD3-212ENST00000479958 P3H3Q8IVL6 736 aa13.61□□□□□ -0.23
COMMD3-212ENST00000479958 ARHGAP33O14559 1287 aa13.6□□□□□ -0.23
COMMD3-212ENST00000479958 ARHGEF1Q92888 912 aaKnown RBP13.6□□□□□ -0.23
COMMD3-212ENST00000479958 PDIA6Q15084 440 aa13.59□□□□□ -0.23
COMMD3-212ENST00000479958 VSIG10Q8N0Z9 540 aa13.58□□□□□ -0.24
COMMD3-212ENST00000479958 ZDHHC16Q969W1 377 aa13.58□□□□□ -0.24
COMMD3-212ENST00000479958 PHF14O94880 888 aa13.57□□□□□ -0.24
COMMD3-212ENST00000479958 PTGER2P43116 358 aa13.57□□□□□ -0.24
COMMD3-212ENST00000479958 FBXW7Q969H0 707 aa13.56□□□□□ -0.24
COMMD3-212ENST00000479958 EPAS1Q99814 870 aa13.56□□□□□ -0.24
COMMD3-212ENST00000479958 TYW1BQ6NUM6 668 aa13.55□□□□□ -0.24
COMMD3-212ENST00000479958 ANKRD13DQ6ZTN6 518 aa13.55□□□□□ -0.24
COMMD3-212ENST00000479958 AXIN2Q9Y2T1 843 aa13.55□□□□□ -0.24
COMMD3-212ENST00000479958 BCL2L12Q9HB09 334 aa13.54□□□□□ -0.24
COMMD3-212ENST00000479958 PCDHGA10Q9Y5H3 936 aa13.54□□□□□ -0.24
COMMD3-212ENST00000479958 PTPREP23469 700 aa13.53□□□□□ -0.24
COMMD3-212ENST00000479958 LSM11P83369 360 aaKnown RBP eCLIP13.53□□□□□ -0.24
COMMD3-212ENST00000479958 KCNV2Q8TDN2 545 aa13.53□□□□□ -0.24
COMMD3-212ENST00000479958 DDX12PQ92771 950 aa13.52□□□□□ -0.25
COMMD3-212ENST00000479958 POTEEQ6S8J3 1075 aa13.51□□□□□ -0.25
COMMD3-212ENST00000479958 SPNS2Q8IVW8 549 aa13.5□□□□□ -0.25
COMMD3-212ENST00000479958 KCNK17Q96T54 332 aa13.5□□□□□ -0.25
COMMD3-212ENST00000479958 KDM2AQ9Y2K7 1162 aa13.49□□□□□ -0.25
COMMD3-212ENST00000479958 PSEN2P49810 448 aa13.48□□□□□ -0.25
COMMD3-212ENST00000479958 ADAM33Q9BZ11 813 aa13.48□□□□□ -0.25
COMMD3-212ENST00000479958 GRXCR2A6NFK2 248 aa13.47□□□□□ -0.25
COMMD3-212ENST00000479958 MMRN1Q13201 1228 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms