RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 PTPN23Q9H3S7 1636 aa20.2■□□□□ 0.82
CHD3-210ENST00000479080 PPRC1Q5VV67 1664 aaKnown RBP20.2■□□□□ 0.82
CHD3-210ENST00000479080 CD109Q6YHK3 1445 aa20.19■□□□□ 0.82
CHD3-210ENST00000479080 FAM69CQ0P6D2 419 aa20.19■□□□□ 0.82
CHD3-210ENST00000479080 SAMD9LQ8IVG5 1584 aa20.19■□□□□ 0.82
CHD3-210ENST00000479080 ZNF644Q9H582 1327 aaPredicted RBP20.18■□□□□ 0.82
CHD3-210ENST00000479080 ARHGAP5Q13017 1502 aa20.17■□□□□ 0.82
CHD3-210ENST00000479080 CAMSAP2Q08AD1 1489 aa20.17■□□□□ 0.82
CHD3-210ENST00000479080 CFDP1Q9UEE9 299 aaPredicted RBP20.14■□□□□ 0.81
CHD3-210ENST00000479080 ARHGEF12Q9NZN5 1544 aa20.13■□□□□ 0.81
CHD3-210ENST00000479080 ABCC1P33527 1531 aa20.12■□□□□ 0.81
CHD3-210ENST00000479080 FANCAO15360 1455 aa20.12■□□□□ 0.81
CHD3-210ENST00000479080 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.12■□□□□ 0.81
CHD3-210ENST00000479080 MBD5Q9P267 1494 aa20.11■□□□□ 0.81
CHD3-210ENST00000479080 PTPRKQ15262 1439 aa20.1■□□□□ 0.81
CHD3-210ENST00000479080 SYCP2Q9BX26 1530 aa20.09■□□□□ 0.81
CHD3-210ENST00000479080 TRIM26Q12899 539 aaPredicted RBP20.09■□□□□ 0.81
CHD3-210ENST00000479080 ZNF777Q9ULD5 760 aaPredicted RBP20.08■□□□□ 0.81
CHD3-210ENST00000479080 FAM50AQ14320 339 aaKnown RBP20.07■□□□□ 0.8
CHD3-210ENST00000479080 EFCAB2Q5VUJ9 269 aa20.07■□□□□ 0.8
CHD3-210ENST00000479080 AKNAQ7Z591 1439 aa20.07■□□□□ 0.8
CHD3-210ENST00000479080 NEO1Q92859 1461 aa20.06■□□□□ 0.8
CHD3-210ENST00000479080 DNMT1P26358 1616 aaKnown RBP20.06■□□□□ 0.8
CHD3-210ENST00000479080 TSPOAP1O95153 1857 aa20.05■□□□□ 0.8
CHD3-210ENST00000479080 ABCC5O15440 1437 aa20.05■□□□□ 0.8
CHD3-210ENST00000479080 KIAA1107Q9UPP5 1409 aa20.05■□□□□ 0.8
CHD3-210ENST00000479080 ARHGEF5Q12774 1597 aa20.04■□□□□ 0.8
CHD3-210ENST00000479080 CFAP74Q9C0B2 1584 aa20.04■□□□□ 0.8
CHD3-210ENST00000479080 DAPK1P53355 1430 aa20.03■□□□□ 0.8
CHD3-210ENST00000479080 TRAPPC8Q9Y2L5 1435 aa20.03■□□□□ 0.8
CHD3-210ENST00000479080 ADGRL1O94910 1474 aa20.03■□□□□ 0.8
CHD3-210ENST00000479080 PLEKHH2Q8IVE3 1493 aa20.03■□□□□ 0.8
CHD3-210ENST00000479080 HNRNPMP52272 730 aaKnown RBP eCLIP20.02■□□□□ 0.8
CHD3-210ENST00000479080 CROCC2H7BZ55 1655 aa20.01■□□□□ 0.79
CHD3-210ENST00000479080 TEX14Q8IWB6 1497 aa20■□□□□ 0.79
CHD3-210ENST00000479080 SCAPERQ9BY12 1400 aa20■□□□□ 0.79
CHD3-210ENST00000479080 CCDC141Q6ZP82 1450 aa19.99■□□□□ 0.79
CHD3-210ENST00000479080 FRMPD1Q5SYB0 1578 aa19.99■□□□□ 0.79
CHD3-210ENST00000479080 COL17A1Q9UMD9 1497 aaPredicted RBP19.99■□□□□ 0.79
CHD3-210ENST00000479080 TRHP20396 242 aaPredicted RBP19.98■□□□□ 0.79
CHD3-210ENST00000479080 POGZQ7Z3K3 1410 aa19.97■□□□□ 0.79
CHD3-210ENST00000479080 SHANK2Q9UPX8 1470 aa19.96■□□□□ 0.79
CHD3-210ENST00000479080 ITGAEP38570 1179 aa19.95■□□□□ 0.78
CHD3-210ENST00000479080 PCGF6Q9BYE7 350 aa19.95■□□□□ 0.78
CHD3-210ENST00000479080 KDM5CP41229 1560 aa19.95■□□□□ 0.78
CHD3-210ENST00000479080 MAST1Q9Y2H9 1570 aa19.95■□□□□ 0.78
CHD3-210ENST00000479080 RICTORQ6R327 1708 aa19.93■□□□□ 0.78
CHD3-210ENST00000479080 DENND4BO75064 1496 aaPredicted RBP19.92■□□□□ 0.78
CHD3-210ENST00000479080 ADGRL2O95490 1459 aa19.92■□□□□ 0.78
CHD3-210ENST00000479080 AFAP1Q8N556 730 aa19.92■□□□□ 0.78
CHD3-210ENST00000479080 C9orf84Q5VXU9 1444 aa19.92■□□□□ 0.78
CHD3-210ENST00000479080 ZFYVE16Q7Z3T8 1539 aa19.92■□□□□ 0.78
CHD3-210ENST00000479080 INO80Q9ULG1 1556 aaPredicted RBP19.91■□□□□ 0.78
CHD3-210ENST00000479080 ZNF518AQ6AHZ1 1483 aa19.9■□□□□ 0.78
CHD3-210ENST00000479080 CHIC2Q9UKJ5 165 aa19.89■□□□□ 0.77
CHD3-210ENST00000479080 RAPGEF3O95398 923 aa19.88■□□□□ 0.77
CHD3-210ENST00000479080 ADGBQ8N7X0 1667 aa19.87■□□□□ 0.77
CHD3-210ENST00000479080 AEBP2Q6ZN18 517 aaPredicted RBP19.87■□□□□ 0.77
CHD3-210ENST00000479080 ZMYM4Q5VZL5 1548 aa19.86■□□□□ 0.77
CHD3-210ENST00000479080 NCOA1Q15788 1441 aa19.86■□□□□ 0.77
CHD3-210ENST00000479080 ROCK1Q13464 1354 aa19.86■□□□□ 0.77
CHD3-210ENST00000479080 RSPH4AQ5TD94 716 aa19.86■□□□□ 0.77
CHD3-210ENST00000479080 KIDINS220Q9ULH0 1771 aa19.85■□□□□ 0.77
CHD3-210ENST00000479080 PLXNC1O60486 1568 aa19.85■□□□□ 0.77
CHD3-210ENST00000479080 ATP7AQ04656 1500 aa19.85■□□□□ 0.77
CHD3-210ENST00000479080 MLH3Q9UHC1 1453 aa19.85■□□□□ 0.77
CHD3-210ENST00000479080 RTEL1-TNFRSF6BF6WH68 1400 aa19.85■□□□□ 0.77
CHD3-210ENST00000479080 NAIPQ13075 1403 aa19.85■□□□□ 0.77
CHD3-210ENST00000479080 HFM1A2PYH4 1435 aa19.84■□□□□ 0.77
CHD3-210ENST00000479080 KDM6BO15054 1643 aa19.84■□□□□ 0.77
CHD3-210ENST00000479080 HECW2Q9P2P5 1572 aa19.83■□□□□ 0.77
CHD3-210ENST00000479080 SPAG9O60271 1321 aaKnown RBP19.82■□□□□ 0.76
CHD3-210ENST00000479080 GCC2Q8IWJ2 1684 aa19.82■□□□□ 0.76
CHD3-210ENST00000479080 ABCA6Q8N139 1617 aa19.82■□□□□ 0.76
CHD3-210ENST00000479080 RRP7BPQ9NSQ0 103 aa19.81■□□□□ 0.76
CHD3-210ENST00000479080 YEATS2Q9ULM3 1422 aa19.81■□□□□ 0.76
CHD3-210ENST00000479080 TSPY4P0CV99 314 aa19.8■□□□□ 0.76
CHD3-210ENST00000479080 TSPY10P0CW01 314 aa19.8■□□□□ 0.76
CHD3-210ENST00000479080 DIP2CQ9Y2E4 1556 aa19.79■□□□□ 0.76
CHD3-210ENST00000479080 ANKRD30AQ9BXX3 1397 aa19.79■□□□□ 0.76
CHD3-210ENST00000479080 KIF15Q9NS87 1388 aa19.78■□□□□ 0.76
CHD3-210ENST00000479080 SETD5Q9C0A6 1442 aa19.76■□□□□ 0.75
CHD3-210ENST00000479080 RAB3GAP2Q9H2M9 1393 aa19.74■□□□□ 0.75
CHD3-210ENST00000479080 ARHGEF40Q8TER5 1519 aa19.74■□□□□ 0.75
CHD3-210ENST00000479080 MAGI2Q86UL8 1455 aa19.73■□□□□ 0.75
CHD3-210ENST00000479080 DUOX2Q9NRD8 1548 aa19.73■□□□□ 0.75
CHD3-210ENST00000479080 SIGLEC1Q9BZZ2 1709 aa19.72■□□□□ 0.75
CHD3-210ENST00000479080 ANKRD50Q9ULJ7 1429 aa19.71■□□□□ 0.75
CHD3-210ENST00000479080 A2MP01023 1474 aa19.69■□□□□ 0.74
CHD3-210ENST00000479080 DHX29Q7Z478 1369 aaKnown RBP19.69■□□□□ 0.74
CHD3-210ENST00000479080 ERBINQ96RT1 1412 aa19.68■□□□□ 0.74
CHD3-210ENST00000479080 REREQ9P2R6 1566 aa19.67■□□□□ 0.74
CHD3-210ENST00000479080 ATP10AO60312 1499 aa19.66■□□□□ 0.74
CHD3-210ENST00000479080 MROH1Q8NDA8 1641 aa19.65■□□□□ 0.74
CHD3-210ENST00000479080 MYT1LQ9UL68 1186 aa19.64■□□□□ 0.73
CHD3-210ENST00000479080 EIF2AK4Q9P2K8 1649 aaKnown RBP19.64■□□□□ 0.73
CHD3-210ENST00000479080 BCORL1Q5H9F3 1711 aa19.63■□□□□ 0.73
CHD3-210ENST00000479080 UNC13BO14795 1591 aa19.63■□□□□ 0.73
CHD3-210ENST00000479080 DEPDC5O75140 1603 aa19.62■□□□□ 0.73
CHD3-210ENST00000479080 HRCP23327 699 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms