RNA–Protein interactions for RNA: ENST00000479051.1

VARS-224, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 612 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-224ENST00000479051 CCNB3Q8WWL7 1395 aa32.19■■■□□ 2.74
VARS-224ENST00000479051 ADGRL1O94910 1474 aa32.18■■■□□ 2.74
VARS-224ENST00000479051 LRRC9Q6ZRR7 1453 aa32.16■■■□□ 2.74
VARS-224ENST00000479051 CDC42BPAQ5VT25 1732 aa32.16■■■□□ 2.74
VARS-224ENST00000479051 CDC42BPBQ9Y5S2 1711 aa32.16■■■□□ 2.74
VARS-224ENST00000479051 RAPGEF3O95398 923 aa32.15■■■□□ 2.74
VARS-224ENST00000479051 SUPT6HQ7KZ85 1726 aaKnown RBP32.14■■■□□ 2.74
VARS-224ENST00000479051 GPATCH8Q9UKJ3 1502 aaKnown RBP32.13■■■□□ 2.73
VARS-224ENST00000479051 SCAPERQ9BY12 1400 aa32.12■■■□□ 2.73
VARS-224ENST00000479051 NCOA2Q15596 1464 aa32.09■■■□□ 2.73
VARS-224ENST00000479051 CFDP1Q9UEE9 299 aaPredicted RBP32.08■■■□□ 2.73
VARS-224ENST00000479051 FRMPD1Q5SYB0 1578 aa32.07■■■□□ 2.72
VARS-224ENST00000479051 ITSN2Q9NZM3 1697 aa32.07■■■□□ 2.72
VARS-224ENST00000479051 RICTORQ6R327 1708 aa32.06■■■□□ 2.72
VARS-224ENST00000479051 KANK4Q5T7N3 995 aaPredicted RBP32.06■■■□□ 2.72
VARS-224ENST00000479051 POGZQ7Z3K3 1410 aa32.06■■■□□ 2.72
VARS-224ENST00000479051 ZNF777Q9ULD5 760 aaPredicted RBP32.05■■■□□ 2.72
VARS-224ENST00000479051 ABCC1P33527 1531 aa32.01■■■□□ 2.72
VARS-224ENST00000479051 ZNF518AQ6AHZ1 1483 aa32■■■□□ 2.71
VARS-224ENST00000479051 PLEKHH2Q8IVE3 1493 aa31.99■■■□□ 2.71
VARS-224ENST00000479051 ZMYM4Q5VZL5 1548 aa31.99■■■□□ 2.71
VARS-224ENST00000479051 SAMD9LQ8IVG5 1584 aa31.97■■■□□ 2.71
VARS-224ENST00000479051 MAGI2Q86UL8 1455 aa31.96■■■□□ 2.71
VARS-224ENST00000479051 KIAA1107Q9UPP5 1409 aa31.92■■■□□ 2.7
VARS-224ENST00000479051 ZFYVE16Q7Z3T8 1539 aa31.91■■■□□ 2.7
VARS-224ENST00000479051 ARHGEF40Q8TER5 1519 aa31.91■■■□□ 2.7
VARS-224ENST00000479051 AFAP1Q8N556 730 aa31.91■■■□□ 2.7
VARS-224ENST00000479051 SYCP2Q9BX26 1530 aa31.9■■■□□ 2.7
VARS-224ENST00000479051 ARHGEF12Q9NZN5 1544 aa31.9■■■□□ 2.7
VARS-224ENST00000479051 KDM5CP41229 1560 aa31.89■■■□□ 2.7
VARS-224ENST00000479051 MYT1LQ9UL68 1186 aa31.88■■■□□ 2.69
VARS-224ENST00000479051 TRAPPC8Q9Y2L5 1435 aa31.88■■■□□ 2.69
VARS-224ENST00000479051 HNRNPMP52272 730 aaKnown RBP eCLIP31.86■■■□□ 2.69
VARS-224ENST00000479051 MYOM3Q5VTT5 1437 aa31.85■■■□□ 2.69
VARS-224ENST00000479051 HECW2Q9P2P5 1572 aa31.84■■■□□ 2.69
VARS-224ENST00000479051 ZNF644Q9H582 1327 aaPredicted RBP31.83■■■□□ 2.69
VARS-224ENST00000479051 YEATS2Q9ULM3 1422 aa31.83■■■□□ 2.69
VARS-224ENST00000479051 CAMSAP2Q08AD1 1489 aa31.82■■■□□ 2.68
VARS-224ENST00000479051 MIA2Q96PC5 1412 aa31.82■■■□□ 2.68
VARS-224ENST00000479051 MLH3Q9UHC1 1453 aa31.81■■■□□ 2.68
VARS-224ENST00000479051 SPAG9O60271 1321 aaKnown RBP31.76■■■□□ 2.68
VARS-224ENST00000479051 ARID4BQ4LE39 1312 aaPredicted RBP31.76■■■□□ 2.68
VARS-224ENST00000479051 ATP10AO60312 1499 aa31.76■■■□□ 2.67
VARS-224ENST00000479051 RSPH4AQ5TD94 716 aa31.75■■■□□ 2.67
VARS-224ENST00000479051 MBD5Q9P267 1494 aa31.75■■■□□ 2.67
VARS-224ENST00000479051 C9orf84Q5VXU9 1444 aa31.74■■■□□ 2.67
VARS-224ENST00000479051 AEBP2Q6ZN18 517 aaPredicted RBP31.72■■■□□ 2.67
VARS-224ENST00000479051 KDM4FA0A1W2PPD8 638 aa31.71■■■□□ 2.67
VARS-224ENST00000479051 CCDC141Q6ZP82 1450 aa31.71■■■□□ 2.67
VARS-224ENST00000479051 DIP2CQ9Y2E4 1556 aa31.69■■■□□ 2.66
VARS-224ENST00000479051 KIDINS220Q9ULH0 1771 aa31.68■■■□□ 2.66
VARS-224ENST00000479051 ATP7AQ04656 1500 aa31.68■■■□□ 2.66
VARS-224ENST00000479051 ARHGEF5Q12774 1597 aa31.68■■■□□ 2.66
VARS-224ENST00000479051 ABCA6Q8N139 1617 aa31.67■■■□□ 2.66
VARS-224ENST00000479051 FGD6Q6ZV73 1430 aa31.67■■■□□ 2.66
VARS-224ENST00000479051 INO80Q9ULG1 1556 aaPredicted RBP31.65■■■□□ 2.66
VARS-224ENST00000479051 PTPN23Q9H3S7 1636 aa31.65■■■□□ 2.66
VARS-224ENST00000479051 TSPY4P0CV99 314 aa31.63■■■□□ 2.65
VARS-224ENST00000479051 TSPY10P0CW01 314 aa31.63■■■□□ 2.65
VARS-224ENST00000479051 REREQ9P2R6 1566 aa31.63■■■□□ 2.65
VARS-224ENST00000479051 RTEL1-TNFRSF6BF6WH68 1400 aa31.62■■■□□ 2.65
VARS-224ENST00000479051 BCORL1Q5H9F3 1711 aa31.61■■■□□ 2.65
VARS-224ENST00000479051 TCOF1Q13428 1488 aaKnown RBP31.58■■■□□ 2.65
VARS-224ENST00000479051 PPARGC1BQ86YN6 1023 aaKnown RBP31.57■■■□□ 2.64
VARS-224ENST00000479051 SIGLEC1Q9BZZ2 1709 aa31.56■■■□□ 2.64
VARS-224ENST00000479051 ADAMTSL3P82987 1691 aa31.54■■■□□ 2.64
VARS-224ENST00000479051 AGLP35573 1532 aa31.54■■■□□ 2.64
VARS-224ENST00000479051 ADGBQ8N7X0 1667 aa31.52■■■□□ 2.64
VARS-224ENST00000479051 MLECQ14165 292 aa31.52■■■□□ 2.64
VARS-224ENST00000479051 A2MP01023 1474 aa31.52■■■□□ 2.64
VARS-224ENST00000479051 MAST1Q9Y2H9 1570 aa31.5■■■□□ 2.63
VARS-224ENST00000479051 FAM50AQ14320 339 aaKnown RBP31.49■■■□□ 2.63
VARS-224ENST00000479051 DNMT1P26358 1616 aaKnown RBP31.46■■■□□ 2.63
VARS-224ENST00000479051 MADDQ8WXG6 1647 aa31.46■■■□□ 2.63
VARS-224ENST00000479051 SHANK2Q9UPX8 1470 aa31.46■■■□□ 2.63
VARS-224ENST00000479051 ABCC5O15440 1437 aa31.45■■■□□ 2.63
VARS-224ENST00000479051 PLXNC1O60486 1568 aa31.45■■■□□ 2.63
VARS-224ENST00000479051 DAPK1P53355 1430 aa31.45■■■□□ 2.63
VARS-224ENST00000479051 CROCC2H7BZ55 1655 aa31.43■■■□□ 2.62
VARS-224ENST00000479051 DHX29Q7Z478 1369 aaKnown RBP31.43■■■□□ 2.62
VARS-224ENST00000479051 FER1L4A9Z1Z3 1794 aa31.4■■■□□ 2.62
VARS-224ENST00000479051 PTPRMP28827 1452 aa31.39■■■□□ 2.62
VARS-224ENST00000479051 RIMS1Q86UR5 1692 aaKnown RBP31.38■■■□□ 2.61
VARS-224ENST00000479051 ESF1Q9H501 851 aaKnown RBP31.38■■■□□ 2.61
VARS-224ENST00000479051 ANKRD30AQ9BXX3 1397 aa31.32■■■□□ 2.6
VARS-224ENST00000479051 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.32■■■□□ 2.6
VARS-224ENST00000479051 KIF15Q9NS87 1388 aa31.3■■■□□ 2.6
VARS-224ENST00000479051 KIF3BO15066 747 aa31.3■■■□□ 2.6
VARS-224ENST00000479051 GGT6Q6P531 493 aa31.3■■■□□ 2.6
VARS-224ENST00000479051 CHIC2Q9UKJ5 165 aa31.3■■■□□ 2.6
VARS-224ENST00000479051 DUOX2Q9NRD8 1548 aa31.29■■■□□ 2.6
VARS-224ENST00000479051 CNTLNQ9NXG0 1405 aa31.29■■■□□ 2.6
VARS-224ENST00000479051 RRBP1Q9P2E9 1410 aaKnown RBP31.27■■■□□ 2.6
VARS-224ENST00000479051 RRP7BPQ9NSQ0 103 aa31.27■■■□□ 2.6
VARS-224ENST00000479051 PPP6R1Q9UPN7 881 aa31.27■■■□□ 2.6
VARS-224ENST00000479051 ADGRL2O95490 1459 aa31.24■■■□□ 2.59
VARS-224ENST00000479051 EIF2AK4Q9P2K8 1649 aaKnown RBP31.24■■■□□ 2.59
VARS-224ENST00000479051 PLPPR3Q6T4P5 718 aa31.23■■■□□ 2.59
VARS-224ENST00000479051 NCOA1Q15788 1441 aa31.23■■■□□ 2.59
VARS-224ENST00000479051 ERBINQ96RT1 1412 aa31.21■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms