RNA–Protein interactions for RNA: ENST00000478440.1

ITGA4-209, Transcript of integrin subunit alpha 4, humanhuman

TSL 1 (best)

Gene ITGA4, Length 1,144 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA4-209ENST00000478440 MICALL2Q8IY33 904 aa14.15□□□□□ -0.14
ITGA4-209ENST00000478440 NKX1-1Q15270 411 aaPredicted RBP14.14□□□□□ -0.15
ITGA4-209ENST00000478440 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.14□□□□□ -0.15
ITGA4-209ENST00000478440 MARVELD3Q96A59 401 aa14.06□□□□□ -0.16
ITGA4-209ENST00000478440 GTPBP6O43824 516 aaPredicted RBP14.05□□□□□ -0.16
ITGA4-209ENST00000478440 SNPHO15079 494 aa14.03□□□□□ -0.16
ITGA4-209ENST00000478440 PPP1R37O75864 691 aa14.02□□□□□ -0.17
ITGA4-209ENST00000478440 SPRYD3Q8NCJ5 442 aa14□□□□□ -0.17
ITGA4-209ENST00000478440 TMC2Q8TDI7 906 aa13.94□□□□□ -0.18
ITGA4-209ENST00000478440 KRTAP3-3Q9BYR6 98 aa13.93□□□□□ -0.18
ITGA4-209ENST00000478440 KRTAP3-2Q9BYR7 98 aa13.93□□□□□ -0.18
ITGA4-209ENST00000478440 PAXIP1Q6ZW49 1069 aaPredicted RBP13.9□□□□□ -0.18
ITGA4-209ENST00000478440 TMEM92Q6UXU6 159 aa13.88□□□□□ -0.19
ITGA4-209ENST00000478440 CFAP44Q96MT7 982 aa13.88□□□□□ -0.19
ITGA4-209ENST00000478440 EMP3P54852 163 aa13.87□□□□□ -0.19
ITGA4-209ENST00000478440 DOK7Q18PE1 504 aa13.87□□□□□ -0.19
ITGA4-209ENST00000478440 C2orf72A6NCS6 295 aa13.85□□□□□ -0.19
ITGA4-209ENST00000478440 KIF3CO14782 793 aa13.85□□□□□ -0.19
ITGA4-209ENST00000478440 RIMBP2O15034 1052 aa13.85□□□□□ -0.19
ITGA4-209ENST00000478440 GPHNQ9NQX3 736 aaPredicted RBP13.83□□□□□ -0.2
ITGA4-209ENST00000478440 PDE4AP27815 886 aa13.82□□□□□ -0.2
ITGA4-209ENST00000478440 HS3ST6Q96QI5 342 aa13.82□□□□□ -0.2
ITGA4-209ENST00000478440 POTEB3A0JP26 581 aa13.8□□□□□ -0.2
ITGA4-209ENST00000478440 POTEBQ6S5H4 581 aa13.8□□□□□ -0.2
ITGA4-209ENST00000478440 ZNF710Q8N1W2 664 aa13.8□□□□□ -0.2
ITGA4-209ENST00000478440 FOXK1P85037 733 aa13.78□□□□□ -0.2
ITGA4-209ENST00000478440 CRISPLD2Q9H0B8 497 aa13.78□□□□□ -0.2
ITGA4-209ENST00000478440 ZSWIM6Q9HCJ5 1215 aa13.77□□□□□ -0.21
ITGA4-209ENST00000478440 FAM205CA6NFA0 338 aa13.75□□□□□ -0.21
ITGA4-209ENST00000478440 HOXB3P14651 431 aaPredicted RBP13.75□□□□□ -0.21
ITGA4-209ENST00000478440 SLC34A2O95436 690 aa13.71□□□□□ -0.21
ITGA4-209ENST00000478440 PLPP6Q8IY26 295 aa13.71□□□□□ -0.21
ITGA4-209ENST00000478440 DSG2Q14126 1118 aa13.7□□□□□ -0.22
ITGA4-209ENST00000478440 LARP6Q9BRS8 491 aaKnown RBP13.7□□□□□ -0.22
ITGA4-209ENST00000478440 NCKAP5LQ9HCH0 1330 aa13.69□□□□□ -0.22
ITGA4-209ENST00000478440 PPP1R15BQ5SWA1 713 aa13.69□□□□□ -0.22
ITGA4-209ENST00000478440 DDX27Q96GQ7 796 aaKnown RBP13.69□□□□□ -0.22
ITGA4-209ENST00000478440 PLCB2Q00722 1185 aa13.68□□□□□ -0.22
ITGA4-209ENST00000478440 MFSD10Q14728 455 aa13.66□□□□□ -0.22
ITGA4-209ENST00000478440 RNF166Q96A37 237 aaPredicted RBP13.66□□□□□ -0.22
ITGA4-209ENST00000478440 HOXB1P14653 301 aaPredicted RBP13.65□□□□□ -0.22
ITGA4-209ENST00000478440 CADPS2Q86UW7 1296 aa13.65□□□□□ -0.22
ITGA4-209ENST00000478440 TBC1D12O60347 775 aa13.64□□□□□ -0.23
ITGA4-209ENST00000478440 GPR153Q6NV75 609 aa13.6□□□□□ -0.23
ITGA4-209ENST00000478440 PTCD2Q8WV60 388 aaKnown RBP13.6□□□□□ -0.23
ITGA4-209ENST00000478440 WDR70Q9NW82 654 aa13.6□□□□□ -0.23
ITGA4-209ENST00000478440 PCDHGA4Q9Y5G9 962 aa13.58□□□□□ -0.24
ITGA4-209ENST00000478440 ARSIQ5FYB1 569 aa13.57□□□□□ -0.24
ITGA4-209ENST00000478440 TSHZ2Q9NRE2 1034 aa13.54□□□□□ -0.24
ITGA4-209ENST00000478440 ZNF316A6NFI3 1004 aaPredicted RBP13.52□□□□□ -0.25
ITGA4-209ENST00000478440 OXER1Q8TDS5 423 aa13.52□□□□□ -0.25
ITGA4-209ENST00000478440 ERBB3P21860 1342 aa13.52□□□□□ -0.25
ITGA4-209ENST00000478440 CAMK2BQ13554 666 aa13.49□□□□□ -0.25
ITGA4-209ENST00000478440 UPF1Q92900 1129 aaKnown RBP eCLIP13.49□□□□□ -0.25
ITGA4-209ENST00000478440 MYT1LQ9UL68 1186 aa13.49□□□□□ -0.25
ITGA4-209ENST00000478440 NUDT7P0C024 238 aa13.48□□□□□ -0.25
ITGA4-209ENST00000478440 PSDA5PKW4 1024 aaPredicted RBP13.47□□□□□ -0.25
ITGA4-209ENST00000478440 MAP3K9P80192 1104 aa13.47□□□□□ -0.25
ITGA4-209ENST00000478440 HAP1P54257 671 aaPredicted RBP13.46□□□□□ -0.25
ITGA4-209ENST00000478440 E2F4Q16254 413 aa13.46□□□□□ -0.25
ITGA4-209ENST00000478440 KHSRPQ92945 711 aaKnown RBP eCLIP13.45□□□□□ -0.26
ITGA4-209ENST00000478440 VARS2Q5ST30 1063 aaKnown RBP13.41□□□□□ -0.26
ITGA4-209ENST00000478440 EMILIN3Q9NT22 766 aa13.41□□□□□ -0.26
ITGA4-209ENST00000478440 KDM4FA0A1W2PPD8 638 aa13.39□□□□□ -0.27
ITGA4-209ENST00000478440 LHX6Q9UPM6 363 aa13.39□□□□□ -0.27
ITGA4-209ENST00000478440 EVI5O60447 810 aa13.37□□□□□ -0.27
ITGA4-209ENST00000478440 ARIH1Q9Y4X5 557 aaPredicted RBP13.36□□□□□ -0.27
ITGA4-209ENST00000478440 P3H3Q8IVL6 736 aa13.35□□□□□ -0.27
ITGA4-209ENST00000478440 ZNF687Q8N1G0 1237 aa13.35□□□□□ -0.27
ITGA4-209ENST00000478440 ANO8Q9HCE9 1232 aaPredicted RBP13.35□□□□□ -0.27
ITGA4-209ENST00000478440 PPP4R3BQ5MIZ7 849 aa13.34□□□□□ -0.27
ITGA4-209ENST00000478440 SPDYE16A6NNV3 312 aaPredicted RBP13.33□□□□□ -0.28
ITGA4-209ENST00000478440 DPYSL4O14531 572 aa13.33□□□□□ -0.28
ITGA4-209ENST00000478440 VSIG10Q8N0Z9 540 aa13.31□□□□□ -0.28
ITGA4-209ENST00000478440 PBX2P40425 430 aa13.3□□□□□ -0.28
ITGA4-209ENST00000478440 JPH4Q96JJ6 628 aa13.28□□□□□ -0.28
ITGA4-209ENST00000478440 PTGER2P43116 358 aa13.27□□□□□ -0.29
ITGA4-209ENST00000478440 PDIA6Q15084 440 aa13.27□□□□□ -0.29
ITGA4-209ENST00000478440 ARHGEF1Q92888 912 aaKnown RBP13.27□□□□□ -0.29
ITGA4-209ENST00000478440 KCNH8Q96L42 1107 aa13.27□□□□□ -0.29
ITGA4-209ENST00000478440 ZNF454Q8N9F8 522 aa13.26□□□□□ -0.29
ITGA4-209ENST00000478440 FOSBP53539 338 aa13.24□□□□□ -0.29
ITGA4-209ENST00000478440 PHF14O94880 888 aa13.22□□□□□ -0.29
ITGA4-209ENST00000478440 KCNV2Q8TDN2 545 aa13.21□□□□□ -0.29
ITGA4-209ENST00000478440 FBXW7Q969H0 707 aa13.21□□□□□ -0.29
ITGA4-209ENST00000478440 EPAS1Q99814 870 aa13.21□□□□□ -0.29
ITGA4-209ENST00000478440 ZDHHC16Q969W1 377 aa13.2□□□□□ -0.3
ITGA4-209ENST00000478440 ARHGAP33O14559 1287 aa13.19□□□□□ -0.3
ITGA4-209ENST00000478440 TYW1BQ6NUM6 668 aa13.18□□□□□ -0.3
ITGA4-209ENST00000478440 BCL2L12Q9HB09 334 aa13.17□□□□□ -0.3
ITGA4-209ENST00000478440 KDM2AQ9Y2K7 1162 aa13.16□□□□□ -0.3
ITGA4-209ENST00000478440 PCDHGA10Q9Y5H3 936 aa13.15□□□□□ -0.3
ITGA4-209ENST00000478440 PTPREP23469 700 aa13.14□□□□□ -0.31
ITGA4-209ENST00000478440 LSM11P83369 360 aaKnown RBP eCLIP13.13□□□□□ -0.31
ITGA4-209ENST00000478440 DDX12PQ92771 950 aa13.13□□□□□ -0.31
ITGA4-209ENST00000478440 PLA2G2EQ9NZK7 142 aa13.13□□□□□ -0.31
ITGA4-209ENST00000478440 NBR1Q14596 966 aa13.1□□□□□ -0.31
ITGA4-209ENST00000478440 KCNK17Q96T54 332 aa13.1□□□□□ -0.31
ITGA4-209ENST00000478440 ADAM33Q9BZ11 813 aa13.09□□□□□ -0.31
ITGA4-209ENST00000478440 AXIN2Q9Y2T1 843 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms