RNA–Protein interactions for RNA: ENST00000477983.1

LMBR1-216, Transcript of limb development membrane protein 1, humanhuman

TSL 2

Gene LMBR1, Length 605 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-216ENST00000477983 HOXB1P14653 301 aaPredicted RBP13.16□□□□□ -0.3
LMBR1-216ENST00000477983 KIF3CO14782 793 aa13.15□□□□□ -0.3
LMBR1-216ENST00000477983 EMP3P54852 163 aa13.14□□□□□ -0.31
LMBR1-216ENST00000477983 ZNF710Q8N1W2 664 aa13.14□□□□□ -0.31
LMBR1-216ENST00000477983 RIMBP2O15034 1052 aa13.12□□□□□ -0.31
LMBR1-216ENST00000477983 ZSWIM6Q9HCJ5 1215 aa13.12□□□□□ -0.31
LMBR1-216ENST00000477983 NKX1-1Q15270 411 aaPredicted RBP13.11□□□□□ -0.31
LMBR1-216ENST00000477983 C2orf72A6NCS6 295 aa13.09□□□□□ -0.31
LMBR1-216ENST00000477983 POTEB3A0JP26 581 aa13.08□□□□□ -0.32
LMBR1-216ENST00000477983 POTEBQ6S5H4 581 aa13.08□□□□□ -0.32
LMBR1-216ENST00000477983 FAM205CA6NFA0 338 aa13.07□□□□□ -0.32
LMBR1-216ENST00000477983 GPR153Q6NV75 609 aa13.07□□□□□ -0.32
LMBR1-216ENST00000477983 HS3ST6Q96QI5 342 aa13.07□□□□□ -0.32
LMBR1-216ENST00000477983 RYDENQ9NUL5 291 aaKnown RBP13.04□□□□□ -0.32
LMBR1-216ENST00000477983 MMRN1Q13201 1228 aa13.03□□□□□ -0.32
LMBR1-216ENST00000477983 SPNS2Q8IVW8 549 aa13.02□□□□□ -0.33
LMBR1-216ENST00000477983 TMC2Q8TDI7 906 aa13.02□□□□□ -0.33
LMBR1-216ENST00000477983 SLC34A2O95436 690 aa12.99□□□□□ -0.33
LMBR1-216ENST00000477983 ERBB3P21860 1342 aa12.97□□□□□ -0.33
LMBR1-216ENST00000477983 ARSIQ5FYB1 569 aa12.97□□□□□ -0.33
LMBR1-216ENST00000477983 GTPBP6O43824 516 aaPredicted RBP12.95□□□□□ -0.34
LMBR1-216ENST00000477983 GPHNQ9NQX3 736 aaPredicted RBP12.95□□□□□ -0.34
LMBR1-216ENST00000477983 FOXK1P85037 733 aa12.94□□□□□ -0.34
LMBR1-216ENST00000477983 KRTAP3-3Q9BYR6 98 aa12.94□□□□□ -0.34
LMBR1-216ENST00000477983 KRTAP3-2Q9BYR7 98 aa12.94□□□□□ -0.34
LMBR1-216ENST00000477983 DCAF8L2P0C7V8 631 aa12.92□□□□□ -0.34
LMBR1-216ENST00000477983 VARS2Q5ST30 1063 aaKnown RBP12.9□□□□□ -0.34
LMBR1-216ENST00000477983 KHSRPQ92945 711 aaKnown RBP eCLIP12.9□□□□□ -0.341e-6■■■■□ 21.7
LMBR1-216ENST00000477983 PCDHGA4Q9Y5G9 962 aa12.89□□□□□ -0.35
LMBR1-216ENST00000477983 ZNF316A6NFI3 1004 aaPredicted RBP12.87□□□□□ -0.35
LMBR1-216ENST00000477983 AMER1Q5JTC6 1135 aaPredicted RBP12.87□□□□□ -0.35
LMBR1-216ENST00000477983 PLPP6Q8IY26 295 aa12.87□□□□□ -0.35
LMBR1-216ENST00000477983 ZNF687Q8N1G0 1237 aa12.87□□□□□ -0.35
LMBR1-216ENST00000477983 DSG2Q14126 1118 aa12.86□□□□□ -0.35
LMBR1-216ENST00000477983 PTCD2Q8WV60 388 aaKnown RBP12.86□□□□□ -0.35
LMBR1-216ENST00000477983 CRISPLD2Q9H0B8 497 aa12.85□□□□□ -0.35
LMBR1-216ENST00000477983 NUDT7P0C024 238 aa12.83□□□□□ -0.36
LMBR1-216ENST00000477983 KDM4FA0A1W2PPD8 638 aa12.81□□□□□ -0.36
LMBR1-216ENST00000477983 PDE4AP27815 886 aa12.79□□□□□ -0.36
LMBR1-216ENST00000477983 NCKAP5LQ9HCH0 1330 aa12.79□□□□□ -0.36
LMBR1-216ENST00000477983 RTN4Q9NQC3 1192 aaKnown RBP12.78□□□□□ -0.36
LMBR1-216ENST00000477983 LHX6Q9UPM6 363 aa12.78□□□□□ -0.36
LMBR1-216ENST00000477983 BBXQ8WY36 941 aaPredicted RBP12.76□□□□□ -0.37
LMBR1-216ENST00000477983 TBC1D12O60347 775 aa12.74□□□□□ -0.37
LMBR1-216ENST00000477983 PPP1R15BQ5SWA1 713 aa12.74□□□□□ -0.37
LMBR1-216ENST00000477983 OXER1Q8TDS5 423 aa12.72□□□□□ -0.37
LMBR1-216ENST00000477983 PSDA5PKW4 1024 aaPredicted RBP12.7□□□□□ -0.38
LMBR1-216ENST00000477983 MFSD10Q14728 455 aa12.7□□□□□ -0.38
LMBR1-216ENST00000477983 LARP6Q9BRS8 491 aaKnown RBP12.69□□□□□ -0.38
LMBR1-216ENST00000477983 PBX2P40425 430 aa12.68□□□□□ -0.38
LMBR1-216ENST00000477983 POTEEQ6S8J3 1075 aa12.67□□□□□ -0.38
LMBR1-216ENST00000477983 DDX27Q96GQ7 796 aaKnown RBP12.67□□□□□ -0.38
LMBR1-216ENST00000477983 CADPS2Q86UW7 1296 aa12.66□□□□□ -0.38
LMBR1-216ENST00000477983 LSM11P83369 360 aaKnown RBP eCLIP12.62□□□□□ -0.39
LMBR1-216ENST00000477983 UPF1Q92900 1129 aaKnown RBP eCLIP12.62□□□□□ -0.39
LMBR1-216ENST00000477983 ANKRD13DQ6ZTN6 518 aa12.6□□□□□ -0.39
LMBR1-216ENST00000477983 ANO8Q9HCE9 1232 aaPredicted RBP12.6□□□□□ -0.39
LMBR1-216ENST00000477983 ARHGAP33O14559 1287 aa12.59□□□□□ -0.39
LMBR1-216ENST00000477983 PTGER2P43116 358 aa12.59□□□□□ -0.39
LMBR1-216ENST00000477983 SPRYD3Q8NCJ5 442 aa12.59□□□□□ -0.39
LMBR1-216ENST00000477983 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.58□□□□□ -0.4
LMBR1-216ENST00000477983 AXIN2Q9Y2T1 843 aa12.58□□□□□ -0.4
LMBR1-216ENST00000477983 PPP4R3BQ5MIZ7 849 aa12.57□□□□□ -0.4
LMBR1-216ENST00000477983 EMILIN3Q9NT22 766 aa12.55□□□□□ -0.4
LMBR1-216ENST00000477983 MYT1LQ9UL68 1186 aa12.55□□□□□ -0.4
LMBR1-216ENST00000477983 RNF166Q96A37 237 aaPredicted RBP12.53□□□□□ -0.4
LMBR1-216ENST00000477983 EVI5O60447 810 aa12.52□□□□□ -0.41
LMBR1-216ENST00000477983 MAP3K9P80192 1104 aa12.52□□□□□ -0.41
LMBR1-216ENST00000477983 CAMK2BQ13554 666 aa12.52□□□□□ -0.41
LMBR1-216ENST00000477983 FOSBP53539 338 aa12.5□□□□□ -0.41
LMBR1-216ENST00000477983 TK2O00142 265 aa12.49□□□□□ -0.41
LMBR1-216ENST00000477983 PSEN2P49810 448 aa12.49□□□□□ -0.41
LMBR1-216ENST00000477983 ZNF454Q8N9F8 522 aa12.49□□□□□ -0.41
LMBR1-216ENST00000477983 DMRTA1Q5VZB9 504 aa12.47□□□□□ -0.41
LMBR1-216ENST00000477983 ADGRD1Q6QNK2 874 aa12.47□□□□□ -0.41
LMBR1-216ENST00000477983 PAXIP1Q6ZW49 1069 aaPredicted RBP12.47□□□□□ -0.41
LMBR1-216ENST00000477983 JPH4Q96JJ6 628 aa12.47□□□□□ -0.41
LMBR1-216ENST00000477983 BCL2L12Q9HB09 334 aa12.46□□□□□ -0.41
LMBR1-216ENST00000477983 CFAP44Q96MT7 982 aa12.44□□□□□ -0.42
LMBR1-216ENST00000477983 HRO43593 1189 aa12.43□□□□□ -0.42
LMBR1-216ENST00000477983 ZDHHC16Q969W1 377 aa12.41□□□□□ -0.42
LMBR1-216ENST00000477983 KCNH8Q96L42 1107 aa12.41□□□□□ -0.42
LMBR1-216ENST00000477983 KCNK17Q96T54 332 aa12.41□□□□□ -0.42
LMBR1-216ENST00000477983 SLC4A5Q9BY07 1137 aa12.39□□□□□ -0.43
LMBR1-216ENST00000477983 PTPREP23469 700 aa12.38□□□□□ -0.43
LMBR1-216ENST00000477983 PCDHGA10Q9Y5H3 936 aa12.38□□□□□ -0.43
LMBR1-216ENST00000477983 DPYSL4O14531 572 aa12.37□□□□□ -0.43
LMBR1-216ENST00000477983 ADAM33Q9BZ11 813 aa12.37□□□□□ -0.43
LMBR1-216ENST00000477983 VPS9D1Q9Y2B5 631 aa12.36□□□□□ -0.43
LMBR1-216ENST00000477983 PHF14O94880 888 aa12.35□□□□□ -0.43
LMBR1-216ENST00000477983 FBXW7Q969H0 707 aa12.33□□□□□ -0.44
LMBR1-216ENST00000477983 TYW1BQ6NUM6 668 aa12.32□□□□□ -0.44
LMBR1-216ENST00000477983 ZBED2Q9BTP6 218 aa12.32□□□□□ -0.44
LMBR1-216ENST00000477983 ARIH1Q9Y4X5 557 aaPredicted RBP12.32□□□□□ -0.44
LMBR1-216ENST00000477983 E2F4Q16254 413 aa12.31□□□□□ -0.44
LMBR1-216ENST00000477983 BHMG1C9JSJ3 638 aaPredicted RBP12.3□□□□□ -0.44
LMBR1-216ENST00000477983 EPAS1Q99814 870 aa12.3□□□□□ -0.44
LMBR1-216ENST00000477983 WDR70Q9NW82 654 aa12.29□□□□□ -0.44
LMBR1-216ENST00000477983 PDIA6Q15084 440 aa12.28□□□□□ -0.44
LMBR1-216ENST00000477983 SPDYE16A6NNV3 312 aaPredicted RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms