RNA–Protein interactions for RNA: ENST00000476930.1

PTPRN-213, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 3

Gene PTPRN, Length 582 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-213ENST00000476930 ARHGAP5Q13017 1502 aa18.05■□□□□ 0.48
PTPRN-213ENST00000476930 EFCAB2Q5VUJ9 269 aa18.05■□□□□ 0.48
PTPRN-213ENST00000476930 BCORL1Q5H9F3 1711 aa18.05■□□□□ 0.48
PTPRN-213ENST00000476930 CDC42BPAQ5VT25 1732 aa18.05■□□□□ 0.48
PTPRN-213ENST00000476930 SIGLEC1Q9BZZ2 1709 aa18.04■□□□□ 0.48
PTPRN-213ENST00000476930 PREX2Q70Z35 1606 aa18.03■□□□□ 0.48
PTPRN-213ENST00000476930 CEP162Q5TB80 1403 aa18.02■□□□□ 0.48
PTPRN-213ENST00000476930 POGZQ7Z3K3 1410 aa18.02■□□□□ 0.48
PTPRN-213ENST00000476930 YEATS2Q9ULM3 1422 aa18.02■□□□□ 0.48
PTPRN-213ENST00000476930 ZFYVE16Q7Z3T8 1539 aa18.02■□□□□ 0.47
PTPRN-213ENST00000476930 ARID4BQ4LE39 1312 aaPredicted RBP18■□□□□ 0.47
PTPRN-213ENST00000476930 MADDQ8WXG6 1647 aa17.99■□□□□ 0.47
PTPRN-213ENST00000476930 LOC105371045A0A1W2PR82 267 aa17.99■□□□□ 0.47
PTPRN-213ENST00000476930 MAGI2Q86UL8 1455 aa17.98■□□□□ 0.47
PTPRN-213ENST00000476930 HECW2Q9P2P5 1572 aa17.96■□□□□ 0.47
PTPRN-213ENST00000476930 ITSN2Q9NZM3 1697 aa17.96■□□□□ 0.47
PTPRN-213ENST00000476930 AFAP1Q8N556 730 aa17.95■□□□□ 0.46
PTPRN-213ENST00000476930 RIMS1Q86UR5 1692 aaKnown RBP17.95■□□□□ 0.46
PTPRN-213ENST00000476930 PTPRMP28827 1452 aa17.95■□□□□ 0.46
PTPRN-213ENST00000476930 ZNF518AQ6AHZ1 1483 aa17.95■□□□□ 0.46
PTPRN-213ENST00000476930 ABCC1P33527 1531 aa17.94■□□□□ 0.46
PTPRN-213ENST00000476930 ARHGEF12Q9NZN5 1544 aa17.94■□□□□ 0.46
PTPRN-213ENST00000476930 KDM5CP41229 1560 aa17.94■□□□□ 0.46
PTPRN-213ENST00000476930 ATP10AO60312 1499 aa17.91■□□□□ 0.46
PTPRN-213ENST00000476930 GPATCH8Q9UKJ3 1502 aaKnown RBP17.91■□□□□ 0.46
PTPRN-213ENST00000476930 SAMD9LQ8IVG5 1584 aa17.91■□□□□ 0.46
PTPRN-213ENST00000476930 TRAPPC8Q9Y2L5 1435 aa17.9■□□□□ 0.46
PTPRN-213ENST00000476930 FER1L4A9Z1Z3 1794 aa17.9■□□□□ 0.46
PTPRN-213ENST00000476930 MTUS2Q5JR59 1369 aa17.9■□□□□ 0.46
PTPRN-213ENST00000476930 DIP2CQ9Y2E4 1556 aa17.88■□□□□ 0.45
PTPRN-213ENST00000476930 ABCA6Q8N139 1617 aa17.88■□□□□ 0.45
PTPRN-213ENST00000476930 MLECQ14165 292 aa17.88■□□□□ 0.45
PTPRN-213ENST00000476930 ZNF777Q9ULD5 760 aaPredicted RBP17.88■□□□□ 0.45
PTPRN-213ENST00000476930 C9orf84Q5VXU9 1444 aa17.88■□□□□ 0.45
PTPRN-213ENST00000476930 KIDINS220Q9ULH0 1771 aa17.87■□□□□ 0.45
PTPRN-213ENST00000476930 MYT1LQ9UL68 1186 aa17.87■□□□□ 0.45
PTPRN-213ENST00000476930 MLH3Q9UHC1 1453 aa17.86■□□□□ 0.45
PTPRN-213ENST00000476930 EHBP1L1Q8N3D4 1523 aa17.86■□□□□ 0.45
PTPRN-213ENST00000476930 TIAM1Q13009 1591 aa17.85■□□□□ 0.45
PTPRN-213ENST00000476930 CCNB3Q8WWL7 1395 aa17.85■□□□□ 0.45
PTPRN-213ENST00000476930 SYCP2Q9BX26 1530 aa17.85■□□□□ 0.45
PTPRN-213ENST00000476930 HNRNPMP52272 730 aaKnown RBP eCLIP17.83■□□□□ 0.44
PTPRN-213ENST00000476930 CFDP1Q9UEE9 299 aaPredicted RBP17.83■□□□□ 0.44
PTPRN-213ENST00000476930 PLPPR3Q6T4P5 718 aa17.82■□□□□ 0.44
PTPRN-213ENST00000476930 REREQ9P2R6 1566 aa17.81■□□□□ 0.44
PTPRN-213ENST00000476930 SUPT6HQ7KZ85 1726 aaKnown RBP17.81■□□□□ 0.44
PTPRN-213ENST00000476930 VPS8Q8N3P4 1428 aa17.81■□□□□ 0.44
PTPRN-213ENST00000476930 ZNF644Q9H582 1327 aaPredicted RBP17.78■□□□□ 0.44
PTPRN-213ENST00000476930 KIAA1107Q9UPP5 1409 aa17.78■□□□□ 0.44
PTPRN-213ENST00000476930 PLEKHH2Q8IVE3 1493 aa17.77■□□□□ 0.44
PTPRN-213ENST00000476930 NCOA2Q15596 1464 aa17.76■□□□□ 0.43
PTPRN-213ENST00000476930 LMTK3Q96Q04 1460 aa17.75■□□□□ 0.43
PTPRN-213ENST00000476930 SPAG9O60271 1321 aaKnown RBP17.75■□□□□ 0.43
PTPRN-213ENST00000476930 INO80Q9ULG1 1556 aaPredicted RBP17.75■□□□□ 0.43
PTPRN-213ENST00000476930 AGLP35573 1532 aa17.75■□□□□ 0.43
PTPRN-213ENST00000476930 ATP7AQ04656 1500 aa17.74■□□□□ 0.43
PTPRN-213ENST00000476930 SETD1BQ9UPS6 1966 aaKnown RBP17.72■□□□□ 0.43
PTPRN-213ENST00000476930 LRRC9Q6ZRR7 1453 aa17.72■□□□□ 0.43
PTPRN-213ENST00000476930 CEBPAP49715 358 aaPredicted RBP17.72■□□□□ 0.43
PTPRN-213ENST00000476930 C3P01024 1663 aa17.71■□□□□ 0.43
PTPRN-213ENST00000476930 MBD5Q9P267 1494 aa17.71■□□□□ 0.43
PTPRN-213ENST00000476930 KANK4Q5T7N3 995 aaPredicted RBP17.7■□□□□ 0.42
PTPRN-213ENST00000476930 ADGBQ8N7X0 1667 aa17.69■□□□□ 0.42
PTPRN-213ENST00000476930 PREX1Q8TCU6 1659 aa17.69■□□□□ 0.42
PTPRN-213ENST00000476930 MAP3K1Q13233 1512 aa17.68■□□□□ 0.42
PTPRN-213ENST00000476930 HSPA2P54652 639 aa17.68■□□□□ 0.42
PTPRN-213ENST00000476930 CAMSAP2Q08AD1 1489 aa17.68■□□□□ 0.42
PTPRN-213ENST00000476930 PLXNC1O60486 1568 aa17.67■□□□□ 0.42
PTPRN-213ENST00000476930 A2MP01023 1474 aa17.66■□□□□ 0.42
PTPRN-213ENST00000476930 CLTCQ00610 1675 aaKnown RBP17.64■□□□□ 0.41
PTPRN-213ENST00000476930 CCDC141Q6ZP82 1450 aa17.63■□□□□ 0.41
PTPRN-213ENST00000476930 MROH2AA6NES4 1674 aa17.62■□□□□ 0.41
PTPRN-213ENST00000476930 ESF1Q9H501 851 aaKnown RBP17.62■□□□□ 0.41
PTPRN-213ENST00000476930 RTEL1-TNFRSF6BF6WH68 1400 aa17.62■□□□□ 0.41
PTPRN-213ENST00000476930 ARHGEF5Q12774 1597 aa17.62■□□□□ 0.41
PTPRN-213ENST00000476930 CNTLNQ9NXG0 1405 aa17.59■□□□□ 0.41
PTPRN-213ENST00000476930 GGT6Q6P531 493 aa17.58■□□□□ 0.4
PTPRN-213ENST00000476930 MYOM3Q5VTT5 1437 aa17.57■□□□□ 0.4
PTPRN-213ENST00000476930 RSPH4AQ5TD94 716 aa17.57■□□□□ 0.4
PTPRN-213ENST00000476930 ILDR1Q86SU0 546 aaPredicted RBP17.57■□□□□ 0.4
PTPRN-213ENST00000476930 STRCQ7RTU9 1775 aa17.57■□□□□ 0.4
PTPRN-213ENST00000476930 DHX29Q7Z478 1369 aaKnown RBP17.56■□□□□ 0.4
PTPRN-213ENST00000476930 APLP2Q06481 763 aa17.56■□□□□ 0.4
PTPRN-213ENST00000476930 UHRF1BP1Q6BDS2 1440 aa17.55■□□□□ 0.4
PTPRN-213ENST00000476930 ZMYM3Q14202 1370 aa17.55■□□□□ 0.4
PTPRN-213ENST00000476930 MIA2Q96PC5 1412 aa17.54■□□□□ 0.4
PTPRN-213ENST00000476930 TSPY4P0CV99 314 aa17.53■□□□□ 0.4
PTPRN-213ENST00000476930 TSPY10P0CW01 314 aa17.53■□□□□ 0.4
PTPRN-213ENST00000476930 MAST1Q9Y2H9 1570 aa17.53■□□□□ 0.4
PTPRN-213ENST00000476930 PTPN23Q9H3S7 1636 aa17.51■□□□□ 0.39
PTPRN-213ENST00000476930 KIF3BO15066 747 aa17.51■□□□□ 0.39
PTPRN-213ENST00000476930 CROCC2H7BZ55 1655 aa17.49■□□□□ 0.39
PTPRN-213ENST00000476930 NPATQ14207 1427 aa17.49■□□□□ 0.39
PTPRN-213ENST00000476930 PPP6R1Q9UPN7 881 aa17.49■□□□□ 0.39
PTPRN-213ENST00000476930 PTPRKQ15262 1439 aa17.47■□□□□ 0.39
PTPRN-213ENST00000476930 MYO3AQ8NEV4 1616 aa17.47■□□□□ 0.39
PTPRN-213ENST00000476930 CFAP65Q6ZU64 1925 aaKnown RBP17.46■□□□□ 0.39
PTPRN-213ENST00000476930 FGD6Q6ZV73 1430 aa17.45■□□□□ 0.38
PTPRN-213ENST00000476930 ZNF142P52746 1687 aaPredicted RBP17.45■□□□□ 0.38
PTPRN-213ENST00000476930 RNF17Q9BXT8 1623 aaKnown RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms