RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 MADDQ8WXG6 1647 aa20.14■□□□□ 0.81
MSH5-SAPCD1-205ENST00000476085 POGZQ7Z3K3 1410 aa20.14■□□□□ 0.81
MSH5-SAPCD1-205ENST00000476085 EFCAB2Q5VUJ9 269 aa20.14■□□□□ 0.81
MSH5-SAPCD1-205ENST00000476085 CASKIN1Q8WXD9 1431 aa20.12■□□□□ 0.81
MSH5-SAPCD1-205ENST00000476085 ARID4BQ4LE39 1312 aaPredicted RBP20.12■□□□□ 0.81
MSH5-SAPCD1-205ENST00000476085 ZFYVE16Q7Z3T8 1539 aa20.12■□□□□ 0.81
MSH5-SAPCD1-205ENST00000476085 ILDR1Q86SU0 546 aaPredicted RBP20.07■□□□□ 0.8
MSH5-SAPCD1-205ENST00000476085 PCF11O94913 1555 aaKnown RBP20.07■□□□□ 0.8
MSH5-SAPCD1-205ENST00000476085 CDC42BPBQ9Y5S2 1711 aa20.07■□□□□ 0.8
MSH5-SAPCD1-205ENST00000476085 CLIP1P30622 1438 aa20.06■□□□□ 0.8
MSH5-SAPCD1-205ENST00000476085 CCDC18Q5T9S5 1454 aa20.05■□□□□ 0.8
MSH5-SAPCD1-205ENST00000476085 RIMS1Q86UR5 1692 aaKnown RBP20.05■□□□□ 0.8
MSH5-SAPCD1-205ENST00000476085 ATP10AO60312 1499 aa20.05■□□□□ 0.8
MSH5-SAPCD1-205ENST00000476085 KDM5CP41229 1560 aa20.04■□□□□ 0.8
MSH5-SAPCD1-205ENST00000476085 ZNF518AQ6AHZ1 1483 aa20.03■□□□□ 0.8
MSH5-SAPCD1-205ENST00000476085 ARHGAP5Q13017 1502 aa20.02■□□□□ 0.8
MSH5-SAPCD1-205ENST00000476085 AFAP1Q8N556 730 aa20.02■□□□□ 0.8
MSH5-SAPCD1-205ENST00000476085 LMTK3Q96Q04 1460 aa20.01■□□□□ 0.79
MSH5-SAPCD1-205ENST00000476085 FYCO1Q9BQS8 1478 aa20.01■□□□□ 0.79
MSH5-SAPCD1-205ENST00000476085 C9orf84Q5VXU9 1444 aa20■□□□□ 0.79
MSH5-SAPCD1-205ENST00000476085 PREX2Q70Z35 1606 aa19.99■□□□□ 0.79
MSH5-SAPCD1-205ENST00000476085 ARHGEF12Q9NZN5 1544 aa19.99■□□□□ 0.79
MSH5-SAPCD1-205ENST00000476085 CDC42BPAQ5VT25 1732 aa19.97■□□□□ 0.79
MSH5-SAPCD1-205ENST00000476085 MLH3Q9UHC1 1453 aa19.97■□□□□ 0.79
MSH5-SAPCD1-205ENST00000476085 FER1L4A9Z1Z3 1794 aa19.96■□□□□ 0.79
MSH5-SAPCD1-205ENST00000476085 REREQ9P2R6 1566 aa19.95■□□□□ 0.78
MSH5-SAPCD1-205ENST00000476085 TRAPPC8Q9Y2L5 1435 aa19.94■□□□□ 0.78
MSH5-SAPCD1-205ENST00000476085 ABCC1P33527 1531 aa19.94■□□□□ 0.78
MSH5-SAPCD1-205ENST00000476085 MLECQ14165 292 aa19.94■□□□□ 0.78
MSH5-SAPCD1-205ENST00000476085 DIP2CQ9Y2E4 1556 aa19.93■□□□□ 0.78
MSH5-SAPCD1-205ENST00000476085 ITSN2Q9NZM3 1697 aa19.92■□□□□ 0.78
MSH5-SAPCD1-205ENST00000476085 GPATCH8Q9UKJ3 1502 aaKnown RBP19.91■□□□□ 0.78
MSH5-SAPCD1-205ENST00000476085 ABCA6Q8N139 1617 aa19.9■□□□□ 0.78
MSH5-SAPCD1-205ENST00000476085 KIDINS220Q9ULH0 1771 aa19.89■□□□□ 0.77
MSH5-SAPCD1-205ENST00000476085 AGLP35573 1532 aa19.88■□□□□ 0.77
MSH5-SAPCD1-205ENST00000476085 SETD1BQ9UPS6 1966 aaKnown RBP19.88■□□□□ 0.77
MSH5-SAPCD1-205ENST00000476085 HSPA2P54652 639 aa19.86■□□□□ 0.77
MSH5-SAPCD1-205ENST00000476085 SAMD9LQ8IVG5 1584 aa19.86■□□□□ 0.77
MSH5-SAPCD1-205ENST00000476085 CEBPAP49715 358 aaPredicted RBP19.83■□□□□ 0.77
MSH5-SAPCD1-205ENST00000476085 KIAA1107Q9UPP5 1409 aa19.83■□□□□ 0.76
MSH5-SAPCD1-205ENST00000476085 PLPPR3Q6T4P5 718 aa19.82■□□□□ 0.76
MSH5-SAPCD1-205ENST00000476085 FBXO41Q8TF61 875 aa19.8■□□□□ 0.76
MSH5-SAPCD1-205ENST00000476085 MYT1LQ9UL68 1186 aa19.8■□□□□ 0.76
MSH5-SAPCD1-205ENST00000476085 PREX1Q8TCU6 1659 aa19.8■□□□□ 0.76
MSH5-SAPCD1-205ENST00000476085 HNRNPMP52272 730 aaKnown RBP eCLIP19.79■□□□□ 0.76
MSH5-SAPCD1-205ENST00000476085 SYCP2Q9BX26 1530 aa19.79■□□□□ 0.76
MSH5-SAPCD1-205ENST00000476085 CFDP1Q9UEE9 299 aaPredicted RBP19.78■□□□□ 0.76
MSH5-SAPCD1-205ENST00000476085 ZNF777Q9ULD5 760 aaPredicted RBP19.78■□□□□ 0.76
MSH5-SAPCD1-205ENST00000476085 MTUS2Q5JR59 1369 aa19.78■□□□□ 0.76
MSH5-SAPCD1-205ENST00000476085 CEP162Q5TB80 1403 aa19.77■□□□□ 0.76
MSH5-SAPCD1-205ENST00000476085 CCNB3Q8WWL7 1395 aa19.77■□□□□ 0.76
MSH5-SAPCD1-205ENST00000476085 PLEKHH2Q8IVE3 1493 aa19.77■□□□□ 0.76
MSH5-SAPCD1-205ENST00000476085 C3P01024 1663 aa19.76■□□□□ 0.75
MSH5-SAPCD1-205ENST00000476085 SPAG9O60271 1321 aaKnown RBP19.75■□□□□ 0.75
MSH5-SAPCD1-205ENST00000476085 TIAM1Q13009 1591 aa19.74■□□□□ 0.75
MSH5-SAPCD1-205ENST00000476085 INO80Q9ULG1 1556 aaPredicted RBP19.73■□□□□ 0.75
MSH5-SAPCD1-205ENST00000476085 MBD5Q9P267 1494 aa19.73■□□□□ 0.75
MSH5-SAPCD1-205ENST00000476085 STRCQ7RTU9 1775 aa19.72■□□□□ 0.75
MSH5-SAPCD1-205ENST00000476085 ATP7AQ04656 1500 aa19.72■□□□□ 0.75
MSH5-SAPCD1-205ENST00000476085 EHBP1L1Q8N3D4 1523 aa19.72■□□□□ 0.75
MSH5-SAPCD1-205ENST00000476085 PLXNC1O60486 1568 aa19.71■□□□□ 0.75
MSH5-SAPCD1-205ENST00000476085 CNTLNQ9NXG0 1405 aa19.71■□□□□ 0.75
MSH5-SAPCD1-205ENST00000476085 ZNF644Q9H582 1327 aaPredicted RBP19.71■□□□□ 0.75
MSH5-SAPCD1-205ENST00000476085 UHRF1BP1Q6BDS2 1440 aa19.7■□□□□ 0.74
MSH5-SAPCD1-205ENST00000476085 MROH2AA6NES4 1674 aa19.68■□□□□ 0.74
MSH5-SAPCD1-205ENST00000476085 SUPT6HQ7KZ85 1726 aaKnown RBP19.68■□□□□ 0.74
MSH5-SAPCD1-205ENST00000476085 A2MP01023 1474 aa19.67■□□□□ 0.74
MSH5-SAPCD1-205ENST00000476085 ZMYM3Q14202 1370 aa19.66■□□□□ 0.74
MSH5-SAPCD1-205ENST00000476085 RTEL1-TNFRSF6BF6WH68 1400 aa19.66■□□□□ 0.74
MSH5-SAPCD1-205ENST00000476085 ESF1Q9H501 851 aaKnown RBP19.65■□□□□ 0.74
MSH5-SAPCD1-205ENST00000476085 LOC105371045A0A1W2PR82 267 aa19.64■□□□□ 0.73
MSH5-SAPCD1-205ENST00000476085 NPATQ14207 1427 aa19.64■□□□□ 0.73
MSH5-SAPCD1-205ENST00000476085 ADGBQ8N7X0 1667 aa19.63■□□□□ 0.73
MSH5-SAPCD1-205ENST00000476085 NCOA2Q15596 1464 aa19.63■□□□□ 0.73
MSH5-SAPCD1-205ENST00000476085 DMRT2Q9Y5R5 561 aa19.63■□□□□ 0.73
MSH5-SAPCD1-205ENST00000476085 CERKQ8TCT0 537 aa19.62■□□□□ 0.73
MSH5-SAPCD1-205ENST00000476085 PPP6R1Q9UPN7 881 aa19.62■□□□□ 0.73
MSH5-SAPCD1-205ENST00000476085 PTPRTO14522 1441 aa19.59■□□□□ 0.73
MSH5-SAPCD1-205ENST00000476085 VPS8Q8N3P4 1428 aa19.59■□□□□ 0.73
MSH5-SAPCD1-205ENST00000476085 RSPH4AQ5TD94 716 aa19.59■□□□□ 0.73
MSH5-SAPCD1-205ENST00000476085 CLTCQ00610 1675 aaKnown RBP19.59■□□□□ 0.73
MSH5-SAPCD1-205ENST00000476085 DHX29Q7Z478 1369 aaKnown RBP19.58■□□□□ 0.73
MSH5-SAPCD1-205ENST00000476085 PTPRKQ15262 1439 aa19.57■□□□□ 0.72
MSH5-SAPCD1-205ENST00000476085 CAMSAP2Q08AD1 1489 aa19.56■□□□□ 0.72
MSH5-SAPCD1-205ENST00000476085 LRRC9Q6ZRR7 1453 aa19.56■□□□□ 0.72
MSH5-SAPCD1-205ENST00000476085 GGT6Q6P531 493 aa19.56■□□□□ 0.72
MSH5-SAPCD1-205ENST00000476085 NCOA1Q15788 1441 aa19.56■□□□□ 0.72
MSH5-SAPCD1-205ENST00000476085 MAP3K1Q13233 1512 aa19.56■□□□□ 0.72
MSH5-SAPCD1-205ENST00000476085 CCDC141Q6ZP82 1450 aa19.55■□□□□ 0.72
MSH5-SAPCD1-205ENST00000476085 ARHGEF5Q12774 1597 aa19.53■□□□□ 0.72
MSH5-SAPCD1-205ENST00000476085 KANK4Q5T7N3 995 aaPredicted RBP19.51■□□□□ 0.71
MSH5-SAPCD1-205ENST00000476085 ZNF142P52746 1687 aaPredicted RBP19.51■□□□□ 0.71
MSH5-SAPCD1-205ENST00000476085 CAMSAP1Q5T5Y3 1602 aa19.5■□□□□ 0.71
MSH5-SAPCD1-205ENST00000476085 LTBP4Q8N2S1 1624 aa19.49■□□□□ 0.71
MSH5-SAPCD1-205ENST00000476085 MYO3AQ8NEV4 1616 aa19.48■□□□□ 0.71
MSH5-SAPCD1-205ENST00000476085 FAM135AQ9P2D6 1515 aa19.47■□□□□ 0.71
MSH5-SAPCD1-205ENST00000476085 KIF3BO15066 747 aa19.47■□□□□ 0.71
MSH5-SAPCD1-205ENST00000476085 CEP170BQ9Y4F5 1589 aaPredicted RBP19.46■□□□□ 0.71
MSH5-SAPCD1-205ENST00000476085 PLA2R1Q13018 1463 aa19.46■□□□□ 0.71
MSH5-SAPCD1-205ENST00000476085 TCOF1Q13428 1488 aaKnown RBP19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms