RNA–Protein interactions for RNA: ENST00000474644.1

COL1A1-204, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 640 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-204ENST00000474644 ARHGAP5Q13017 1502 aa24.66■■□□□ 1.54
COL1A1-204ENST00000474644 GPATCH8Q9UKJ3 1502 aaKnown RBP24.66■■□□□ 1.54
COL1A1-204ENST00000474644 CCNB3Q8WWL7 1395 aa24.66■■□□□ 1.54
COL1A1-204ENST00000474644 CDC42BPBQ9Y5S2 1711 aa24.65■■□□□ 1.54
COL1A1-204ENST00000474644 PHLDB1Q86UU1 1377 aa24.64■■□□□ 1.53
COL1A1-204ENST00000474644 COL17A1Q9UMD9 1497 aaPredicted RBP24.63■■□□□ 1.53
COL1A1-204ENST00000474644 AKNAQ7Z591 1439 aa24.62■■□□□ 1.53
COL1A1-204ENST00000474644 ITSN2Q9NZM3 1697 aa24.61■■□□□ 1.53
COL1A1-204ENST00000474644 EFCAB2Q5VUJ9 269 aa24.6■■□□□ 1.53
COL1A1-204ENST00000474644 ADGRL1O94910 1474 aa24.58■■□□□ 1.52
COL1A1-204ENST00000474644 CFDP1Q9UEE9 299 aaPredicted RBP24.54■■□□□ 1.52
COL1A1-204ENST00000474644 ABCC1P33527 1531 aa24.54■■□□□ 1.52
COL1A1-204ENST00000474644 SAMD9LQ8IVG5 1584 aa24.54■■□□□ 1.52
COL1A1-204ENST00000474644 FRMPD1Q5SYB0 1578 aa24.53■■□□□ 1.52
COL1A1-204ENST00000474644 MYOM3Q5VTT5 1437 aa24.52■■□□□ 1.52
COL1A1-204ENST00000474644 SCAPERQ9BY12 1400 aa24.52■■□□□ 1.52
COL1A1-204ENST00000474644 DENND4BO75064 1496 aaPredicted RBP24.51■■□□□ 1.51
COL1A1-204ENST00000474644 POGZQ7Z3K3 1410 aa24.5■■□□□ 1.51
COL1A1-204ENST00000474644 ZNF777Q9ULD5 760 aaPredicted RBP24.49■■□□□ 1.51
COL1A1-204ENST00000474644 RICTORQ6R327 1708 aa24.48■■□□□ 1.51
COL1A1-204ENST00000474644 ARHGEF12Q9NZN5 1544 aa24.48■■□□□ 1.51
COL1A1-204ENST00000474644 SYCP2Q9BX26 1530 aa24.47■■□□□ 1.51
COL1A1-204ENST00000474644 RAPGEF3O95398 923 aa24.47■■□□□ 1.51
COL1A1-204ENST00000474644 PLEKHH2Q8IVE3 1493 aa24.46■■□□□ 1.51
COL1A1-204ENST00000474644 CAMSAP2Q08AD1 1489 aa24.45■■□□□ 1.51
COL1A1-204ENST00000474644 MIA2Q96PC5 1412 aa24.45■■□□□ 1.51
COL1A1-204ENST00000474644 ZNF644Q9H582 1327 aaPredicted RBP24.44■■□□□ 1.5
COL1A1-204ENST00000474644 PPARGC1BQ86YN6 1023 aaKnown RBP24.44■■□□□ 1.5
COL1A1-204ENST00000474644 KIAA1107Q9UPP5 1409 aa24.44■■□□□ 1.5
COL1A1-204ENST00000474644 ZMYM4Q5VZL5 1548 aa24.43■■□□□ 1.5
COL1A1-204ENST00000474644 ZNF518AQ6AHZ1 1483 aa24.43■■□□□ 1.5
COL1A1-204ENST00000474644 TRAPPC8Q9Y2L5 1435 aa24.42■■□□□ 1.5
COL1A1-204ENST00000474644 FGD6Q6ZV73 1430 aa24.41■■□□□ 1.5
COL1A1-204ENST00000474644 KDM5CP41229 1560 aa24.41■■□□□ 1.5
COL1A1-204ENST00000474644 MBD5Q9P267 1494 aa24.38■■□□□ 1.49
COL1A1-204ENST00000474644 HNRNPMP52272 730 aaKnown RBP eCLIP24.37■■□□□ 1.49
COL1A1-204ENST00000474644 PTPN23Q9H3S7 1636 aa24.36■■□□□ 1.49
COL1A1-204ENST00000474644 AFAP1Q8N556 730 aa24.36■■□□□ 1.49
COL1A1-204ENST00000474644 TCOF1Q13428 1488 aaKnown RBP24.35■■□□□ 1.49
COL1A1-204ENST00000474644 ARHGEF40Q8TER5 1519 aa24.34■■□□□ 1.49
COL1A1-204ENST00000474644 HECW2Q9P2P5 1572 aa24.33■■□□□ 1.49
COL1A1-204ENST00000474644 MAGI2Q86UL8 1455 aa24.33■■□□□ 1.49
COL1A1-204ENST00000474644 ZFYVE16Q7Z3T8 1539 aa24.33■■□□□ 1.49
COL1A1-204ENST00000474644 ARHGEF5Q12774 1597 aa24.33■■□□□ 1.48
COL1A1-204ENST00000474644 CCDC141Q6ZP82 1450 aa24.32■■□□□ 1.48
COL1A1-204ENST00000474644 MLH3Q9UHC1 1453 aa24.31■■□□□ 1.48
COL1A1-204ENST00000474644 YEATS2Q9ULM3 1422 aa24.3■■□□□ 1.48
COL1A1-204ENST00000474644 INO80Q9ULG1 1556 aaPredicted RBP24.29■■□□□ 1.48
COL1A1-204ENST00000474644 ATP7AQ04656 1500 aa24.25■■□□□ 1.47
COL1A1-204ENST00000474644 KIDINS220Q9ULH0 1771 aa24.25■■□□□ 1.47
COL1A1-204ENST00000474644 KDM4FA0A1W2PPD8 638 aa24.25■■□□□ 1.47
COL1A1-204ENST00000474644 SPAG9O60271 1321 aaKnown RBP24.25■■□□□ 1.47
COL1A1-204ENST00000474644 DIP2CQ9Y2E4 1556 aa24.25■■□□□ 1.47
COL1A1-204ENST00000474644 ABCA6Q8N139 1617 aa24.24■■□□□ 1.47
COL1A1-204ENST00000474644 RSPH4AQ5TD94 716 aa24.23■■□□□ 1.47
COL1A1-204ENST00000474644 DNMT1P26358 1616 aaKnown RBP24.23■■□□□ 1.47
COL1A1-204ENST00000474644 CROCC2H7BZ55 1655 aa24.21■■□□□ 1.47
COL1A1-204ENST00000474644 ABCC5O15440 1437 aa24.2■■□□□ 1.46
COL1A1-204ENST00000474644 DAPK1P53355 1430 aa24.2■■□□□ 1.46
COL1A1-204ENST00000474644 RRBP1Q9P2E9 1410 aaKnown RBP24.2■■□□□ 1.46
COL1A1-204ENST00000474644 FAM50AQ14320 339 aaKnown RBP24.2■■□□□ 1.46
COL1A1-204ENST00000474644 MYT1LQ9UL68 1186 aa24.2■■□□□ 1.46
COL1A1-204ENST00000474644 MAST1Q9Y2H9 1570 aa24.2■■□□□ 1.46
COL1A1-204ENST00000474644 ATP10AO60312 1499 aa24.19■■□□□ 1.46
COL1A1-204ENST00000474644 RTEL1-TNFRSF6BF6WH68 1400 aa24.19■■□□□ 1.46
COL1A1-204ENST00000474644 SHANK2Q9UPX8 1470 aa24.19■■□□□ 1.46
COL1A1-204ENST00000474644 C9orf84Q5VXU9 1444 aa24.18■■□□□ 1.46
COL1A1-204ENST00000474644 REREQ9P2R6 1566 aa24.16■■□□□ 1.46
COL1A1-204ENST00000474644 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.16■■□□□ 1.46
COL1A1-204ENST00000474644 TSPY4P0CV99 314 aa24.15■■□□□ 1.46
COL1A1-204ENST00000474644 TSPY10P0CW01 314 aa24.15■■□□□ 1.46
COL1A1-204ENST00000474644 SIGLEC1Q9BZZ2 1709 aa24.15■■□□□ 1.46
COL1A1-204ENST00000474644 PLXNC1O60486 1568 aa24.12■■□□□ 1.45
COL1A1-204ENST00000474644 ADGBQ8N7X0 1667 aa24.11■■□□□ 1.45
COL1A1-204ENST00000474644 A2MP01023 1474 aa24.09■■□□□ 1.45
COL1A1-204ENST00000474644 PTPRKQ15262 1439 aa24.07■■□□□ 1.44
COL1A1-204ENST00000474644 AGLP35573 1532 aa24.06■■□□□ 1.44
COL1A1-204ENST00000474644 ARID4BQ4LE39 1312 aaPredicted RBP24.06■■□□□ 1.44
COL1A1-204ENST00000474644 ADGRL2O95490 1459 aa24.06■■□□□ 1.44
COL1A1-204ENST00000474644 CHIC2Q9UKJ5 165 aa24.03■■□□□ 1.44
COL1A1-204ENST00000474644 DHX29Q7Z478 1369 aaKnown RBP24.03■■□□□ 1.44
COL1A1-204ENST00000474644 BCORL1Q5H9F3 1711 aa24.02■■□□□ 1.44
COL1A1-204ENST00000474644 ANKRD30AQ9BXX3 1397 aa24.01■■□□□ 1.43
COL1A1-204ENST00000474644 KIF15Q9NS87 1388 aa24.01■■□□□ 1.43
COL1A1-204ENST00000474644 ITGAEP38570 1179 aa24■■□□□ 1.43
COL1A1-204ENST00000474644 NCOA1Q15788 1441 aa24■■□□□ 1.43
COL1A1-204ENST00000474644 DUOX2Q9NRD8 1548 aa24■■□□□ 1.43
COL1A1-204ENST00000474644 ADAMTSL3P82987 1691 aa23.97■■□□□ 1.43
COL1A1-204ENST00000474644 ROCK1Q13464 1354 aa23.96■■□□□ 1.43
COL1A1-204ENST00000474644 RRP7BPQ9NSQ0 103 aa23.96■■□□□ 1.43
COL1A1-204ENST00000474644 MLECQ14165 292 aa23.95■■□□□ 1.42
COL1A1-204ENST00000474644 ERBINQ96RT1 1412 aa23.94■■□□□ 1.42
COL1A1-204ENST00000474644 EIF2AK4Q9P2K8 1649 aaKnown RBP23.94■■□□□ 1.42
COL1A1-204ENST00000474644 MADDQ8WXG6 1647 aa23.93■■□□□ 1.42
COL1A1-204ENST00000474644 FER1L4A9Z1Z3 1794 aa23.88■■□□□ 1.41
COL1A1-204ENST00000474644 RNF17Q9BXT8 1623 aaKnown RBP23.88■■□□□ 1.41
COL1A1-204ENST00000474644 KIF3BO15066 747 aa23.88■■□□□ 1.41
COL1A1-204ENST00000474644 ANKRD50Q9ULJ7 1429 aa23.86■■□□□ 1.41
COL1A1-204ENST00000474644 RIMS1Q86UR5 1692 aaKnown RBP23.86■■□□□ 1.41
COL1A1-204ENST00000474644 MROH1Q8NDA8 1641 aa23.84■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms