RNA–Protein interactions for RNA: ENST00000474258.1

SEMA4D-216, Transcript of semaphorin 4D, humanhuman

TSL 4

Gene SEMA4D, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-216ENST00000474258 MADDQ8WXG6 1647 aa18.04■□□□□ 0.48
SEMA4D-216ENST00000474258 CLIP1P30622 1438 aa18.04■□□□□ 0.48
SEMA4D-216ENST00000474258 ZFYVE16Q7Z3T8 1539 aa18.03■□□□□ 0.48
SEMA4D-216ENST00000474258 CASKIN1Q8WXD9 1431 aa18.02■□□□□ 0.48
SEMA4D-216ENST00000474258 POGZQ7Z3K3 1410 aa18.01■□□□□ 0.47
SEMA4D-216ENST00000474258 CCDC18Q5T9S5 1454 aa18.01■□□□□ 0.47
SEMA4D-216ENST00000474258 PCF11O94913 1555 aaKnown RBP18■□□□□ 0.47
SEMA4D-216ENST00000474258 RIMS1Q86UR5 1692 aaKnown RBP18■□□□□ 0.47
SEMA4D-216ENST00000474258 YEATS2Q9ULM3 1422 aa18■□□□□ 0.47
SEMA4D-216ENST00000474258 CDC42BPBQ9Y5S2 1711 aa18■□□□□ 0.47
SEMA4D-216ENST00000474258 ARHGAP5Q13017 1502 aa17.99■□□□□ 0.47
SEMA4D-216ENST00000474258 SIGLEC1Q9BZZ2 1709 aa17.98■□□□□ 0.47
SEMA4D-216ENST00000474258 ATP10AO60312 1499 aa17.95■□□□□ 0.46
SEMA4D-216ENST00000474258 ZNF518AQ6AHZ1 1483 aa17.95■□□□□ 0.46
SEMA4D-216ENST00000474258 FYCO1Q9BQS8 1478 aa17.95■□□□□ 0.46
SEMA4D-216ENST00000474258 PREX2Q70Z35 1606 aa17.94■□□□□ 0.46
SEMA4D-216ENST00000474258 FER1L4A9Z1Z3 1794 aa17.94■□□□□ 0.46
SEMA4D-216ENST00000474258 CDC42BPAQ5VT25 1732 aa17.92■□□□□ 0.46
SEMA4D-216ENST00000474258 C9orf84Q5VXU9 1444 aa17.92■□□□□ 0.46
SEMA4D-216ENST00000474258 KDM5CP41229 1560 aa17.91■□□□□ 0.46
SEMA4D-216ENST00000474258 MLECQ14165 292 aa17.91■□□□□ 0.46
SEMA4D-216ENST00000474258 ILDR1Q86SU0 546 aaPredicted RBP17.91■□□□□ 0.46
SEMA4D-216ENST00000474258 AFAP1Q8N556 730 aa17.91■□□□□ 0.46
SEMA4D-216ENST00000474258 MYT1LQ9UL68 1186 aa17.9■□□□□ 0.46
SEMA4D-216ENST00000474258 ITSN2Q9NZM3 1697 aa17.88■□□□□ 0.45
SEMA4D-216ENST00000474258 PLPPR3Q6T4P5 718 aa17.87■□□□□ 0.45
SEMA4D-216ENST00000474258 LMTK3Q96Q04 1460 aa17.87■□□□□ 0.45
SEMA4D-216ENST00000474258 ABCC1P33527 1531 aa17.87■□□□□ 0.45
SEMA4D-216ENST00000474258 ARHGEF12Q9NZN5 1544 aa17.85■□□□□ 0.45
SEMA4D-216ENST00000474258 MLH3Q9UHC1 1453 aa17.85■□□□□ 0.45
SEMA4D-216ENST00000474258 DIP2CQ9Y2E4 1556 aa17.84■□□□□ 0.45
SEMA4D-216ENST00000474258 TRAPPC8Q9Y2L5 1435 aa17.83■□□□□ 0.45
SEMA4D-216ENST00000474258 SETD1BQ9UPS6 1966 aaKnown RBP17.83■□□□□ 0.44
SEMA4D-216ENST00000474258 REREQ9P2R6 1566 aa17.83■□□□□ 0.44
SEMA4D-216ENST00000474258 ABCA6Q8N139 1617 aa17.82■□□□□ 0.44
SEMA4D-216ENST00000474258 KIDINS220Q9ULH0 1771 aa17.81■□□□□ 0.44
SEMA4D-216ENST00000474258 ZNF777Q9ULD5 760 aaPredicted RBP17.8■□□□□ 0.44
SEMA4D-216ENST00000474258 GPATCH8Q9UKJ3 1502 aaKnown RBP17.8■□□□□ 0.44
SEMA4D-216ENST00000474258 SAMD9LQ8IVG5 1584 aa17.79■□□□□ 0.44
SEMA4D-216ENST00000474258 MTUS2Q5JR59 1369 aa17.78■□□□□ 0.44
SEMA4D-216ENST00000474258 HSPA2P54652 639 aa17.77■□□□□ 0.44
SEMA4D-216ENST00000474258 AGLP35573 1532 aa17.77■□□□□ 0.43
SEMA4D-216ENST00000474258 PREX1Q8TCU6 1659 aa17.77■□□□□ 0.43
SEMA4D-216ENST00000474258 CFDP1Q9UEE9 299 aaPredicted RBP17.76■□□□□ 0.43
SEMA4D-216ENST00000474258 CCNB3Q8WWL7 1395 aa17.76■□□□□ 0.43
SEMA4D-216ENST00000474258 CEP162Q5TB80 1403 aa17.75■□□□□ 0.43
SEMA4D-216ENST00000474258 CEBPAP49715 358 aaPredicted RBP17.75■□□□□ 0.43
SEMA4D-216ENST00000474258 SYCP2Q9BX26 1530 aa17.75■□□□□ 0.43
SEMA4D-216ENST00000474258 HNRNPMP52272 730 aaKnown RBP eCLIP17.74■□□□□ 0.43
SEMA4D-216ENST00000474258 PLEKHH2Q8IVE3 1493 aa17.74■□□□□ 0.43
SEMA4D-216ENST00000474258 KIAA1107Q9UPP5 1409 aa17.73■□□□□ 0.43
SEMA4D-216ENST00000474258 ESF1Q9H501 851 aaKnown RBP17.73■□□□□ 0.43
SEMA4D-216ENST00000474258 SPAG9O60271 1321 aaKnown RBP17.72■□□□□ 0.43
SEMA4D-216ENST00000474258 C3P01024 1663 aa17.72■□□□□ 0.43
SEMA4D-216ENST00000474258 EHBP1L1Q8N3D4 1523 aa17.72■□□□□ 0.43
SEMA4D-216ENST00000474258 SUPT6HQ7KZ85 1726 aaKnown RBP17.7■□□□□ 0.42
SEMA4D-216ENST00000474258 FBXO41Q8TF61 875 aa17.69■□□□□ 0.42
SEMA4D-216ENST00000474258 TIAM1Q13009 1591 aa17.69■□□□□ 0.42
SEMA4D-216ENST00000474258 ATP7AQ04656 1500 aa17.68■□□□□ 0.42
SEMA4D-216ENST00000474258 INO80Q9ULG1 1556 aaPredicted RBP17.66■□□□□ 0.42
SEMA4D-216ENST00000474258 UHRF1BP1Q6BDS2 1440 aa17.66■□□□□ 0.42
SEMA4D-216ENST00000474258 CNTLNQ9NXG0 1405 aa17.66■□□□□ 0.42
SEMA4D-216ENST00000474258 MROH2AA6NES4 1674 aa17.64■□□□□ 0.42
SEMA4D-216ENST00000474258 ADGBQ8N7X0 1667 aa17.64■□□□□ 0.41
SEMA4D-216ENST00000474258 STRCQ7RTU9 1775 aa17.63■□□□□ 0.41
SEMA4D-216ENST00000474258 ZNF644Q9H582 1327 aaPredicted RBP17.63■□□□□ 0.41
SEMA4D-216ENST00000474258 A2MP01023 1474 aa17.63■□□□□ 0.41
SEMA4D-216ENST00000474258 LOC105371045A0A1W2PR82 267 aa17.62■□□□□ 0.41
SEMA4D-216ENST00000474258 PLXNC1O60486 1568 aa17.62■□□□□ 0.41
SEMA4D-216ENST00000474258 MBD5Q9P267 1494 aa17.61■□□□□ 0.41
SEMA4D-216ENST00000474258 DMRT2Q9Y5R5 561 aa17.6■□□□□ 0.41
SEMA4D-216ENST00000474258 NCOA2Q15596 1464 aa17.6■□□□□ 0.41
SEMA4D-216ENST00000474258 CLTCQ00610 1675 aaKnown RBP17.59■□□□□ 0.41
SEMA4D-216ENST00000474258 RTEL1-TNFRSF6BF6WH68 1400 aa17.58■□□□□ 0.41
SEMA4D-216ENST00000474258 ZMYM3Q14202 1370 aa17.58■□□□□ 0.4
SEMA4D-216ENST00000474258 VPS8Q8N3P4 1428 aa17.57■□□□□ 0.4
SEMA4D-216ENST00000474258 RSPH4AQ5TD94 716 aa17.57■□□□□ 0.4
SEMA4D-216ENST00000474258 GGT6Q6P531 493 aa17.57■□□□□ 0.4
SEMA4D-216ENST00000474258 NPATQ14207 1427 aa17.56■□□□□ 0.4
SEMA4D-216ENST00000474258 CERKQ8TCT0 537 aa17.56■□□□□ 0.4
SEMA4D-216ENST00000474258 PPP6R1Q9UPN7 881 aa17.56■□□□□ 0.4
SEMA4D-216ENST00000474258 CAMSAP2Q08AD1 1489 aa17.55■□□□□ 0.4
SEMA4D-216ENST00000474258 CCDC141Q6ZP82 1450 aa17.54■□□□□ 0.4
SEMA4D-216ENST00000474258 LRRC9Q6ZRR7 1453 aa17.53■□□□□ 0.4
SEMA4D-216ENST00000474258 DHX29Q7Z478 1369 aaKnown RBP17.53■□□□□ 0.4
SEMA4D-216ENST00000474258 PTPRTO14522 1441 aa17.51■□□□□ 0.39
SEMA4D-216ENST00000474258 MAP3K1Q13233 1512 aa17.51■□□□□ 0.39
SEMA4D-216ENST00000474258 ARHGEF5Q12774 1597 aa17.5■□□□□ 0.39
SEMA4D-216ENST00000474258 TSPY4P0CV99 314 aa17.49■□□□□ 0.39
SEMA4D-216ENST00000474258 TSPY10P0CW01 314 aa17.49■□□□□ 0.39
SEMA4D-216ENST00000474258 CAMSAP1Q5T5Y3 1602 aa17.48■□□□□ 0.39
SEMA4D-216ENST00000474258 ZNF142P52746 1687 aaPredicted RBP17.48■□□□□ 0.39
SEMA4D-216ENST00000474258 PTPRKQ15262 1439 aa17.47■□□□□ 0.39
SEMA4D-216ENST00000474258 NCOA1Q15788 1441 aa17.47■□□□□ 0.39
SEMA4D-216ENST00000474258 KIF3BO15066 747 aa17.47■□□□□ 0.39
SEMA4D-216ENST00000474258 MYO3AQ8NEV4 1616 aa17.47■□□□□ 0.39
SEMA4D-216ENST00000474258 KANK4Q5T7N3 995 aaPredicted RBP17.46■□□□□ 0.39
SEMA4D-216ENST00000474258 CEP170BQ9Y4F5 1589 aaPredicted RBP17.44■□□□□ 0.38
SEMA4D-216ENST00000474258 FAM135AQ9P2D6 1515 aa17.43■□□□□ 0.38
SEMA4D-216ENST00000474258 MIA2Q96PC5 1412 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms