RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 ABCA9Q8IUA7 1624 aa19.23■□□□□ 0.67
VPS13D-205ENST00000473099 CFDP1Q9UEE9 299 aaPredicted RBP19.23■□□□□ 0.67
VPS13D-205ENST00000473099 ARAP3Q8WWN8 1544 aa19.23■□□□□ 0.67
VPS13D-205ENST00000473099 ADGBQ8N7X0 1667 aa19.22■□□□□ 0.67
VPS13D-205ENST00000473099 GCC2Q8IWJ2 1684 aa19.21■□□□□ 0.67
VPS13D-205ENST00000473099 ASXL2Q76L83 1435 aa19.2■□□□□ 0.66
VPS13D-205ENST00000473099 ARHGEF5Q12774 1597 aa19.19■□□□□ 0.66
VPS13D-205ENST00000473099 AKNAQ7Z591 1439 aa19.18■□□□□ 0.66
VPS13D-205ENST00000473099 ITGAEP38570 1179 aa19.18■□□□□ 0.66
VPS13D-205ENST00000473099 MAPKBP1O60336 1514 aa19.18■□□□□ 0.66
VPS13D-205ENST00000473099 ARHGAP5Q13017 1502 aa19.17■□□□□ 0.66
VPS13D-205ENST00000473099 PLEKHH2Q8IVE3 1493 aa19.16■□□□□ 0.66
VPS13D-205ENST00000473099 SAMD9LQ8IVG5 1584 aa19.16■□□□□ 0.66
VPS13D-205ENST00000473099 DAPK1P53355 1430 aa19.16■□□□□ 0.66
VPS13D-205ENST00000473099 SETD5Q9C0A6 1442 aa19.16■□□□□ 0.66
VPS13D-205ENST00000473099 PLCH2O75038 1416 aa19.15■□□□□ 0.66
VPS13D-205ENST00000473099 HFM1A2PYH4 1435 aa19.14■□□□□ 0.65
VPS13D-205ENST00000473099 HRCP23327 699 aa19.13■□□□□ 0.65
VPS13D-205ENST00000473099 ZEB1P37275 1124 aaPredicted RBP19.13■□□□□ 0.65
VPS13D-205ENST00000473099 KCNH8Q96L42 1107 aa19.13■□□□□ 0.65
VPS13D-205ENST00000473099 CFAP74Q9C0B2 1584 aa19.13■□□□□ 0.65
VPS13D-205ENST00000473099 SHANK2Q9UPX8 1470 aa19.12■□□□□ 0.65
VPS13D-205ENST00000473099 PTPRKQ15262 1439 aa19.11■□□□□ 0.65
VPS13D-205ENST00000473099 ROCK1Q13464 1354 aa19.11■□□□□ 0.65
VPS13D-205ENST00000473099 KIF13AQ9H1H9 1805 aa19.11■□□□□ 0.65
VPS13D-205ENST00000473099 ABCC5O15440 1437 aa19.1■□□□□ 0.65
VPS13D-205ENST00000473099 ACIN1Q9UKV3 1341 aaKnown RBP19.09■□□□□ 0.65
VPS13D-205ENST00000473099 RSPH4AQ5TD94 716 aa19.09■□□□□ 0.65
VPS13D-205ENST00000473099 CCER1Q8TC90 406 aaPredicted RBP19.09■□□□□ 0.65
VPS13D-205ENST00000473099 KIAA1107Q9UPP5 1409 aa19.08■□□□□ 0.65
VPS13D-205ENST00000473099 RAB3GAP2Q9H2M9 1393 aa19.08■□□□□ 0.65
VPS13D-205ENST00000473099 ZNF644Q9H582 1327 aaPredicted RBP19.08■□□□□ 0.65
VPS13D-205ENST00000473099 ZNF777Q9ULD5 760 aaPredicted RBP19.08■□□□□ 0.64
VPS13D-205ENST00000473099 ADGRL2O95490 1459 aa19.08■□□□□ 0.64
VPS13D-205ENST00000473099 CCDC141Q6ZP82 1450 aa19.07■□□□□ 0.64
VPS13D-205ENST00000473099 MAST1Q9Y2H9 1570 aa19.06■□□□□ 0.64
VPS13D-205ENST00000473099 ABCC1P33527 1531 aa19.06■□□□□ 0.64
VPS13D-205ENST00000473099 EFCAB2Q5VUJ9 269 aa19.06■□□□□ 0.64
VPS13D-205ENST00000473099 NAIPQ13075 1403 aa19.06■□□□□ 0.64
VPS13D-205ENST00000473099 GLI2P10070 1586 aa19.06■□□□□ 0.64
VPS13D-205ENST00000473099 SYCP2Q9BX26 1530 aa19.05■□□□□ 0.64
VPS13D-205ENST00000473099 MBD5Q9P267 1494 aa19.04■□□□□ 0.64
VPS13D-205ENST00000473099 MAP3K4Q9Y6R4 1608 aa19.03■□□□□ 0.64
VPS13D-205ENST00000473099 CLSPNQ9HAW4 1339 aa19.02■□□□□ 0.64
VPS13D-205ENST00000473099 FANCAO15360 1455 aa19.02■□□□□ 0.63
VPS13D-205ENST00000473099 C9orf84Q5VXU9 1444 aa19■□□□□ 0.63
VPS13D-205ENST00000473099 ANKRD30AQ9BXX3 1397 aa19■□□□□ 0.63
VPS13D-205ENST00000473099 DIP2BQ9P265 1576 aa19■□□□□ 0.63
VPS13D-205ENST00000473099 PLXNC1O60486 1568 aa18.99■□□□□ 0.63
VPS13D-205ENST00000473099 TSPY4P0CV99 314 aa18.99■□□□□ 0.63
VPS13D-205ENST00000473099 TSPY10P0CW01 314 aa18.99■□□□□ 0.63
VPS13D-205ENST00000473099 NCOA1Q15788 1441 aa18.99■□□□□ 0.63
VPS13D-205ENST00000473099 DHX57Q6P158 1386 aaKnown RBP18.98■□□□□ 0.63
VPS13D-205ENST00000473099 CD109Q6YHK3 1445 aa18.98■□□□□ 0.63
VPS13D-205ENST00000473099 CHIC2Q9UKJ5 165 aa18.97■□□□□ 0.63
VPS13D-205ENST00000473099 HNRNPMP52272 730 aaKnown RBP eCLIP18.95■□□□□ 0.62
VPS13D-205ENST00000473099 RRP7BPQ9NSQ0 103 aa18.94■□□□□ 0.62
VPS13D-205ENST00000473099 NEO1Q92859 1461 aa18.94■□□□□ 0.62
VPS13D-205ENST00000473099 ADGRL1O94910 1474 aa18.93■□□□□ 0.62
VPS13D-205ENST00000473099 FAM69CQ0P6D2 419 aa18.93■□□□□ 0.62
VPS13D-205ENST00000473099 ARHGEF12Q9NZN5 1544 aa18.93■□□□□ 0.62
VPS13D-205ENST00000473099 KDM6BO15054 1643 aa18.92■□□□□ 0.62
VPS13D-205ENST00000473099 RTEL1-TNFRSF6BF6WH68 1400 aa18.9■□□□□ 0.62
VPS13D-205ENST00000473099 INO80Q9ULG1 1556 aaPredicted RBP18.89■□□□□ 0.62
VPS13D-205ENST00000473099 TSPOAP1O95153 1857 aa18.88■□□□□ 0.61
VPS13D-205ENST00000473099 ZNF518AQ6AHZ1 1483 aa18.87■□□□□ 0.61
VPS13D-205ENST00000473099 DUOX2Q9NRD8 1548 aa18.87■□□□□ 0.61
VPS13D-205ENST00000473099 KIF15Q9NS87 1388 aa18.87■□□□□ 0.61
VPS13D-205ENST00000473099 ANKRD50Q9ULJ7 1429 aa18.87■□□□□ 0.61
VPS13D-205ENST00000473099 ZFYVE16Q7Z3T8 1539 aa18.86■□□□□ 0.61
VPS13D-205ENST00000473099 SCAPERQ9BY12 1400 aa18.86■□□□□ 0.61
VPS13D-205ENST00000473099 TRAPPC8Q9Y2L5 1435 aa18.86■□□□□ 0.61
VPS13D-205ENST00000473099 PPRC1Q5VV67 1664 aaKnown RBP18.85■□□□□ 0.61
VPS13D-205ENST00000473099 ATP7AQ04656 1500 aa18.85■□□□□ 0.61
VPS13D-205ENST00000473099 TEX14Q8IWB6 1497 aa18.85■□□□□ 0.61
VPS13D-205ENST00000473099 KDM5CP41229 1560 aa18.85■□□□□ 0.61
VPS13D-205ENST00000473099 RICTORQ6R327 1708 aa18.83■□□□□ 0.61
VPS13D-205ENST00000473099 SPAG9O60271 1321 aaKnown RBP18.82■□□□□ 0.6
VPS13D-205ENST00000473099 KIDINS220Q9ULH0 1771 aa18.82■□□□□ 0.6
VPS13D-205ENST00000473099 UNC13BO14795 1591 aa18.81■□□□□ 0.6
VPS13D-205ENST00000473099 HECW2Q9P2P5 1572 aa18.81■□□□□ 0.6
VPS13D-205ENST00000473099 KDM5DQ9BY66 1539 aa18.81■□□□□ 0.6
VPS13D-205ENST00000473099 POGZQ7Z3K3 1410 aa18.81■□□□□ 0.6
VPS13D-205ENST00000473099 ERBINQ96RT1 1412 aa18.81■□□□□ 0.6
VPS13D-205ENST00000473099 EIF2AK4Q9P2K8 1649 aaKnown RBP18.8■□□□□ 0.6
VPS13D-205ENST00000473099 DENND4BO75064 1496 aaPredicted RBP18.78■□□□□ 0.6
VPS13D-205ENST00000473099 TRIM52Q96A61 297 aa18.78■□□□□ 0.6
VPS13D-205ENST00000473099 MLH3Q9UHC1 1453 aa18.77■□□□□ 0.59
VPS13D-205ENST00000473099 AFAP1Q8N556 730 aa18.75■□□□□ 0.59
VPS13D-205ENST00000473099 DEPDC5O75140 1603 aa18.74■□□□□ 0.59
VPS13D-205ENST00000473099 IQGAP3Q86VI3 1631 aa18.74■□□□□ 0.59
VPS13D-205ENST00000473099 BCORL1Q5H9F3 1711 aa18.73■□□□□ 0.59
VPS13D-205ENST00000473099 PZPP20742 1482 aa18.72■□□□□ 0.59
VPS13D-205ENST00000473099 MAGI2Q86UL8 1455 aa18.72■□□□□ 0.59
VPS13D-205ENST00000473099 ZMYM4Q5VZL5 1548 aa18.72■□□□□ 0.59
VPS13D-205ENST00000473099 MPHOSPH9Q99550 1183 aa18.71■□□□□ 0.59
VPS13D-205ENST00000473099 FRMPD1Q5SYB0 1578 aa18.69■□□□□ 0.58
VPS13D-205ENST00000473099 TIMELESSQ9UNS1 1208 aa18.69■□□□□ 0.58
VPS13D-205ENST00000473099 ABCA6Q8N139 1617 aa18.69■□□□□ 0.58
VPS13D-205ENST00000473099 NUP155O75694 1391 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms