RNA–Protein interactions for RNA: ENST00000472988.5

SMARCD3-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,654 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-209ENST00000472988 SAMD9LQ8IVG5 1584 aa29.11■■■□□ 2.25
SMARCD3-209ENST00000472988 ARHGAP5Q13017 1502 aa29.11■■■□□ 2.25
SMARCD3-209ENST00000472988 DNAJC5Q9H3Z4 198 aa29.11■■■□□ 2.25
SMARCD3-209ENST00000472988 ARAP3Q8WWN8 1544 aa29.08■■■□□ 2.25
SMARCD3-209ENST00000472988 PLCH2O75038 1416 aa29.08■■■□□ 2.25
SMARCD3-209ENST00000472988 DNMT1P26358 1616 aaKnown RBP29.08■■■□□ 2.25
SMARCD3-209ENST00000472988 ZNF644Q9H582 1327 aaPredicted RBP29.07■■■□□ 2.24
SMARCD3-209ENST00000472988 DIP2BQ9P265 1576 aa29.06■■■□□ 2.24
SMARCD3-209ENST00000472988 ITGAEP38570 1179 aa29.05■■■□□ 2.24
SMARCD3-209ENST00000472988 CROCC2H7BZ55 1655 aa29.04■■■□□ 2.24
SMARCD3-209ENST00000472988 GLI2P10070 1586 aa29.04■■■□□ 2.24
SMARCD3-209ENST00000472988 MAP3K4Q9Y6R4 1608 aa29.03■■■□□ 2.24
SMARCD3-209ENST00000472988 ZNF777Q9ULD5 760 aaPredicted RBP29.02■■■□□ 2.24
SMARCD3-209ENST00000472988 PTPRKQ15262 1439 aa29■■■□□ 2.23
SMARCD3-209ENST00000472988 KIF13AQ9H1H9 1805 aa28.99■■■□□ 2.23
SMARCD3-209ENST00000472988 DAPK1P53355 1430 aa28.97■■■□□ 2.23
SMARCD3-209ENST00000472988 SYCP2Q9BX26 1530 aa28.96■■■□□ 2.23
SMARCD3-209ENST00000472988 ARHGEF5Q12774 1597 aa28.96■■■□□ 2.23
SMARCD3-209ENST00000472988 ABCC1P33527 1531 aa28.96■■■□□ 2.23
SMARCD3-209ENST00000472988 ABCC5O15440 1437 aa28.95■■■□□ 2.22
SMARCD3-209ENST00000472988 CD109Q6YHK3 1445 aa28.94■■■□□ 2.22
SMARCD3-209ENST00000472988 FANCAO15360 1455 aa28.94■■■□□ 2.22
SMARCD3-209ENST00000472988 MBD5Q9P267 1494 aa28.92■■■□□ 2.22
SMARCD3-209ENST00000472988 CFAP74Q9C0B2 1584 aa28.92■■■□□ 2.22
SMARCD3-209ENST00000472988 ADGBQ8N7X0 1667 aa28.92■■■□□ 2.22
SMARCD3-209ENST00000472988 PLEKHH2Q8IVE3 1493 aa28.91■■■□□ 2.22
SMARCD3-209ENST00000472988 EFCAB2Q5VUJ9 269 aa28.9■■■□□ 2.22
SMARCD3-209ENST00000472988 ARHGEF12Q9NZN5 1544 aa28.89■■■□□ 2.21
SMARCD3-209ENST00000472988 KIAA1107Q9UPP5 1409 aa28.88■■■□□ 2.21
SMARCD3-209ENST00000472988 PPRC1Q5VV67 1664 aaKnown RBP28.87■■■□□ 2.21
SMARCD3-209ENST00000472988 GCC2Q8IWJ2 1684 aa28.87■■■□□ 2.21
SMARCD3-209ENST00000472988 TSPOAP1O95153 1857 aa28.87■■■□□ 2.21
SMARCD3-209ENST00000472988 CCDC141Q6ZP82 1450 aa28.86■■■□□ 2.21
SMARCD3-209ENST00000472988 SHANK2Q9UPX8 1470 aa28.85■■■□□ 2.21
SMARCD3-209ENST00000472988 HNRNPMP52272 730 aaKnown RBP eCLIP28.83■■■□□ 2.21
SMARCD3-209ENST00000472988 FAM69CQ0P6D2 419 aa28.83■■■□□ 2.21
SMARCD3-209ENST00000472988 AKNAQ7Z591 1439 aa28.83■■■□□ 2.21
SMARCD3-209ENST00000472988 ADGRL1O94910 1474 aa28.81■■■□□ 2.2
SMARCD3-209ENST00000472988 HFM1A2PYH4 1435 aa28.8■■■□□ 2.2
SMARCD3-209ENST00000472988 CHIC2Q9UKJ5 165 aa28.8■■■□□ 2.2
SMARCD3-209ENST00000472988 MAST1Q9Y2H9 1570 aa28.8■■■□□ 2.2
SMARCD3-209ENST00000472988 ADGRL2O95490 1459 aa28.79■■■□□ 2.2
SMARCD3-209ENST00000472988 C9orf84Q5VXU9 1444 aa28.78■■■□□ 2.2
SMARCD3-209ENST00000472988 NEO1Q92859 1461 aa28.77■■■□□ 2.2
SMARCD3-209ENST00000472988 ROCK1Q13464 1354 aa28.77■■■□□ 2.2
SMARCD3-209ENST00000472988 SETD5Q9C0A6 1442 aa28.77■■■□□ 2.2
SMARCD3-209ENST00000472988 NAIPQ13075 1403 aa28.76■■■□□ 2.19
SMARCD3-209ENST00000472988 TRAPPC8Q9Y2L5 1435 aa28.76■■■□□ 2.19
SMARCD3-209ENST00000472988 RSPH4AQ5TD94 716 aa28.74■■■□□ 2.19
SMARCD3-209ENST00000472988 RAB3GAP2Q9H2M9 1393 aa28.73■■■□□ 2.19
SMARCD3-209ENST00000472988 SCAPERQ9BY12 1400 aa28.73■■■□□ 2.19
SMARCD3-209ENST00000472988 NCOA1Q15788 1441 aa28.71■■■□□ 2.19
SMARCD3-209ENST00000472988 RRP7BPQ9NSQ0 103 aa28.7■■■□□ 2.19
SMARCD3-209ENST00000472988 KDM6BO15054 1643 aa28.7■■■□□ 2.19
SMARCD3-209ENST00000472988 PLXNC1O60486 1568 aa28.7■■■□□ 2.18
SMARCD3-209ENST00000472988 INO80Q9ULG1 1556 aaPredicted RBP28.68■■■□□ 2.18
SMARCD3-209ENST00000472988 TEX14Q8IWB6 1497 aa28.67■■■□□ 2.18
SMARCD3-209ENST00000472988 TSPY4P0CV99 314 aa28.67■■■□□ 2.18
SMARCD3-209ENST00000472988 TSPY10P0CW01 314 aa28.67■■■□□ 2.18
SMARCD3-209ENST00000472988 ZFYVE16Q7Z3T8 1539 aa28.67■■■□□ 2.18
SMARCD3-209ENST00000472988 RICTORQ6R327 1708 aa28.67■■■□□ 2.18
SMARCD3-209ENST00000472988 ANKRD30AQ9BXX3 1397 aa28.66■■■□□ 2.18
SMARCD3-209ENST00000472988 POGZQ7Z3K3 1410 aa28.65■■■□□ 2.18
SMARCD3-209ENST00000472988 KDM5CP41229 1560 aa28.64■■■□□ 2.18
SMARCD3-209ENST00000472988 ZNF518AQ6AHZ1 1483 aa28.64■■■□□ 2.17
SMARCD3-209ENST00000472988 AFAP1Q8N556 730 aa28.62■■■□□ 2.17
SMARCD3-209ENST00000472988 ATP7AQ04656 1500 aa28.61■■■□□ 2.17
SMARCD3-209ENST00000472988 KIDINS220Q9ULH0 1771 aa28.6■■■□□ 2.17
SMARCD3-209ENST00000472988 FRMPD1Q5SYB0 1578 aa28.6■■■□□ 2.17
SMARCD3-209ENST00000472988 DENND4BO75064 1496 aaPredicted RBP28.59■■■□□ 2.17
SMARCD3-209ENST00000472988 KIF15Q9NS87 1388 aa28.58■■■□□ 2.17
SMARCD3-209ENST00000472988 RTEL1-TNFRSF6BF6WH68 1400 aa28.58■■■□□ 2.17
SMARCD3-209ENST00000472988 HECW2Q9P2P5 1572 aa28.57■■■□□ 2.16
SMARCD3-209ENST00000472988 SPAG9O60271 1321 aaKnown RBP28.57■■■□□ 2.16
SMARCD3-209ENST00000472988 HRCP23327 699 aa28.55■■■□□ 2.16
SMARCD3-209ENST00000472988 ANKRD50Q9ULJ7 1429 aa28.52■■■□□ 2.16
SMARCD3-209ENST00000472988 DUOX2Q9NRD8 1548 aa28.51■■■□□ 2.15
SMARCD3-209ENST00000472988 DHX57Q6P158 1386 aaKnown RBP28.51■■■□□ 2.15
SMARCD3-209ENST00000472988 MLH3Q9UHC1 1453 aa28.5■■■□□ 2.15
SMARCD3-209ENST00000472988 ZMYM4Q5VZL5 1548 aa28.49■■■□□ 2.15
SMARCD3-209ENST00000472988 ABCA6Q8N139 1617 aa28.48■■■□□ 2.15
SMARCD3-209ENST00000472988 RAPGEF3O95398 923 aa28.48■■■□□ 2.15
SMARCD3-209ENST00000472988 CCER1Q8TC90 406 aaPredicted RBP28.47■■■□□ 2.15
SMARCD3-209ENST00000472988 TRHP20396 242 aaPredicted RBP28.46■■■□□ 2.15
SMARCD3-209ENST00000472988 COL17A1Q9UMD9 1497 aaPredicted RBP28.43■■■□□ 2.14
SMARCD3-209ENST00000472988 ERBINQ96RT1 1412 aa28.43■■■□□ 2.14
SMARCD3-209ENST00000472988 DIP2CQ9Y2E4 1556 aa28.41■■■□□ 2.14
SMARCD3-209ENST00000472988 UNC13BO14795 1591 aa28.41■■■□□ 2.14
SMARCD3-209ENST00000472988 MYT1LQ9UL68 1186 aa28.39■■■□□ 2.14
SMARCD3-209ENST00000472988 EIF2AK4Q9P2K8 1649 aaKnown RBP28.39■■■□□ 2.13
SMARCD3-209ENST00000472988 KDM5DQ9BY66 1539 aa28.35■■■□□ 2.13
SMARCD3-209ENST00000472988 DEPDC5O75140 1603 aa28.35■■■□□ 2.13
SMARCD3-209ENST00000472988 A2MP01023 1474 aa28.34■■■□□ 2.13
SMARCD3-209ENST00000472988 YEATS2Q9ULM3 1422 aa28.34■■■□□ 2.13
SMARCD3-209ENST00000472988 TRIM52Q96A61 297 aa28.33■■■□□ 2.13
SMARCD3-209ENST00000472988 ACIN1Q9UKV3 1341 aaKnown RBP28.32■■■□□ 2.12
SMARCD3-209ENST00000472988 PZPP20742 1482 aa28.32■■■□□ 2.12
SMARCD3-209ENST00000472988 MAGI2Q86UL8 1455 aa28.32■■■□□ 2.12
SMARCD3-209ENST00000472988 BCORL1Q5H9F3 1711 aa28.31■■■□□ 2.12
SMARCD3-209ENST00000472988 DHX29Q7Z478 1369 aaKnown RBP28.31■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms