RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 POGZQ7Z3K3 1410 aa32.32■■■□□ 2.76
COL9A3-210ENST00000472880 SCAPERQ9BY12 1400 aa32.32■■■□□ 2.76
COL9A3-210ENST00000472880 MAGI2Q86UL8 1455 aa32.31■■■□□ 2.76
COL9A3-210ENST00000472880 PCF11O94913 1555 aaKnown RBP32.31■■■□□ 2.76
COL9A3-210ENST00000472880 YEATS2Q9ULM3 1422 aa32.27■■■□□ 2.76
COL9A3-210ENST00000472880 EFCAB2Q5VUJ9 269 aa32.27■■■□□ 2.76
COL9A3-210ENST00000472880 CCDC18Q5T9S5 1454 aa32.27■■■□□ 2.76
COL9A3-210ENST00000472880 CASKIN1Q8WXD9 1431 aa32.26■■■□□ 2.76
COL9A3-210ENST00000472880 ARHGAP5Q13017 1502 aa32.25■■■□□ 2.75
COL9A3-210ENST00000472880 RIMS1Q86UR5 1692 aaKnown RBP32.23■■■□□ 2.75
COL9A3-210ENST00000472880 SIGLEC1Q9BZZ2 1709 aa32.2■■■□□ 2.74
COL9A3-210ENST00000472880 FYCO1Q9BQS8 1478 aa32.17■■■□□ 2.74
COL9A3-210ENST00000472880 ZNF518AQ6AHZ1 1483 aa32.16■■■□□ 2.74
COL9A3-210ENST00000472880 PREX2Q70Z35 1606 aa32.13■■■□□ 2.73
COL9A3-210ENST00000472880 CDC42BPBQ9Y5S2 1711 aa32.12■■■□□ 2.73
COL9A3-210ENST00000472880 ATP10AO60312 1499 aa32.11■■■□□ 2.73
COL9A3-210ENST00000472880 C9orf84Q5VXU9 1444 aa32.11■■■□□ 2.73
COL9A3-210ENST00000472880 KDM5CP41229 1560 aa32.11■■■□□ 2.73
COL9A3-210ENST00000472880 FER1L4A9Z1Z3 1794 aa32.08■■■□□ 2.73
COL9A3-210ENST00000472880 ILDR1Q86SU0 546 aaPredicted RBP32.07■■■□□ 2.72
COL9A3-210ENST00000472880 MLECQ14165 292 aa32.06■■■□□ 2.72
COL9A3-210ENST00000472880 LMTK3Q96Q04 1460 aa32.05■■■□□ 2.72
COL9A3-210ENST00000472880 ABCC1P33527 1531 aa32.04■■■□□ 2.72
COL9A3-210ENST00000472880 AFAP1Q8N556 730 aa32.02■■■□□ 2.72
COL9A3-210ENST00000472880 CDC42BPAQ5VT25 1732 aa32.01■■■□□ 2.72
COL9A3-210ENST00000472880 PLPPR3Q6T4P5 718 aa32.01■■■□□ 2.71
COL9A3-210ENST00000472880 MYT1LQ9UL68 1186 aa32.01■■■□□ 2.71
COL9A3-210ENST00000472880 ARHGEF12Q9NZN5 1544 aa32■■■□□ 2.71
COL9A3-210ENST00000472880 ITSN2Q9NZM3 1697 aa32■■■□□ 2.71
COL9A3-210ENST00000472880 DIP2CQ9Y2E4 1556 aa31.99■■■□□ 2.71
COL9A3-210ENST00000472880 ABCA6Q8N139 1617 aa31.95■■■□□ 2.71
COL9A3-210ENST00000472880 MLH3Q9UHC1 1453 aa31.95■■■□□ 2.7
COL9A3-210ENST00000472880 REREQ9P2R6 1566 aa31.94■■■□□ 2.7
COL9A3-210ENST00000472880 TRAPPC8Q9Y2L5 1435 aa31.94■■■□□ 2.7
COL9A3-210ENST00000472880 SAMD9LQ8IVG5 1584 aa31.87■■■□□ 2.69
COL9A3-210ENST00000472880 GPATCH8Q9UKJ3 1502 aaKnown RBP31.86■■■□□ 2.69
COL9A3-210ENST00000472880 ZNF777Q9ULD5 760 aaPredicted RBP31.85■■■□□ 2.69
COL9A3-210ENST00000472880 SYCP2Q9BX26 1530 aa31.84■■■□□ 2.69
COL9A3-210ENST00000472880 KIDINS220Q9ULH0 1771 aa31.84■■■□□ 2.69
COL9A3-210ENST00000472880 MTUS2Q5JR59 1369 aa31.83■■■□□ 2.69
COL9A3-210ENST00000472880 HSPA2P54652 639 aa31.83■■■□□ 2.69
COL9A3-210ENST00000472880 CEP162Q5TB80 1403 aa31.82■■■□□ 2.68
COL9A3-210ENST00000472880 AGLP35573 1532 aa31.81■■■□□ 2.68
COL9A3-210ENST00000472880 PREX1Q8TCU6 1659 aa31.8■■■□□ 2.68
COL9A3-210ENST00000472880 CCNB3Q8WWL7 1395 aa31.8■■■□□ 2.68
COL9A3-210ENST00000472880 EHBP1L1Q8N3D4 1523 aa31.77■■■□□ 2.68
COL9A3-210ENST00000472880 PLEKHH2Q8IVE3 1493 aa31.77■■■□□ 2.68
COL9A3-210ENST00000472880 CEBPAP49715 358 aaPredicted RBP31.75■■■□□ 2.67
COL9A3-210ENST00000472880 CFDP1Q9UEE9 299 aaPredicted RBP31.75■■■□□ 2.67
COL9A3-210ENST00000472880 KIAA1107Q9UPP5 1409 aa31.73■■■□□ 2.67
COL9A3-210ENST00000472880 SPAG9O60271 1321 aaKnown RBP31.72■■■□□ 2.67
COL9A3-210ENST00000472880 HNRNPMP52272 730 aaKnown RBP eCLIP31.71■■■□□ 2.67
COL9A3-210ENST00000472880 ESF1Q9H501 851 aaKnown RBP31.71■■■□□ 2.67
COL9A3-210ENST00000472880 TIAM1Q13009 1591 aa31.7■■■□□ 2.67
COL9A3-210ENST00000472880 ATP7AQ04656 1500 aa31.7■■■□□ 2.66
COL9A3-210ENST00000472880 C3P01024 1663 aa31.69■■■□□ 2.66
COL9A3-210ENST00000472880 INO80Q9ULG1 1556 aaPredicted RBP31.68■■■□□ 2.66
COL9A3-210ENST00000472880 FBXO41Q8TF61 875 aa31.67■■■□□ 2.66
COL9A3-210ENST00000472880 UHRF1BP1Q6BDS2 1440 aa31.66■■■□□ 2.66
COL9A3-210ENST00000472880 CNTLNQ9NXG0 1405 aa31.64■■■□□ 2.66
COL9A3-210ENST00000472880 SUPT6HQ7KZ85 1726 aaKnown RBP31.62■■■□□ 2.65
COL9A3-210ENST00000472880 SETD1BQ9UPS6 1966 aaKnown RBP31.59■■■□□ 2.65
COL9A3-210ENST00000472880 PLXNC1O60486 1568 aa31.59■■■□□ 2.65
COL9A3-210ENST00000472880 A2MP01023 1474 aa31.58■■■□□ 2.65
COL9A3-210ENST00000472880 MROH2AA6NES4 1674 aa31.57■■■□□ 2.64
COL9A3-210ENST00000472880 ZNF644Q9H582 1327 aaPredicted RBP31.54■■■□□ 2.64
COL9A3-210ENST00000472880 ADGBQ8N7X0 1667 aa31.54■■■□□ 2.64
COL9A3-210ENST00000472880 NCOA2Q15596 1464 aa31.52■■■□□ 2.64
COL9A3-210ENST00000472880 MBD5Q9P267 1494 aa31.52■■■□□ 2.64
COL9A3-210ENST00000472880 STRCQ7RTU9 1775 aa31.5■■■□□ 2.63
COL9A3-210ENST00000472880 VPS8Q8N3P4 1428 aa31.49■■■□□ 2.63
COL9A3-210ENST00000472880 CLTCQ00610 1675 aaKnown RBP31.48■■■□□ 2.63
COL9A3-210ENST00000472880 DMRT2Q9Y5R5 561 aa31.46■■■□□ 2.63
COL9A3-210ENST00000472880 NPATQ14207 1427 aa31.46■■■□□ 2.63
COL9A3-210ENST00000472880 CAMSAP2Q08AD1 1489 aa31.46■■■□□ 2.63
COL9A3-210ENST00000472880 RTEL1-TNFRSF6BF6WH68 1400 aa31.45■■■□□ 2.63
COL9A3-210ENST00000472880 ZMYM3Q14202 1370 aa31.44■■■□□ 2.62
COL9A3-210ENST00000472880 LOC105371045A0A1W2PR82 267 aa31.44■■■□□ 2.62
COL9A3-210ENST00000472880 CCDC141Q6ZP82 1450 aa31.44■■■□□ 2.62
COL9A3-210ENST00000472880 GGT6Q6P531 493 aa31.41■■■□□ 2.62
COL9A3-210ENST00000472880 CERKQ8TCT0 537 aa31.41■■■□□ 2.62
COL9A3-210ENST00000472880 LRRC9Q6ZRR7 1453 aa31.39■■■□□ 2.62
COL9A3-210ENST00000472880 PTPRTO14522 1441 aa31.34■■■□□ 2.61
COL9A3-210ENST00000472880 DHX29Q7Z478 1369 aaKnown RBP31.34■■■□□ 2.61
COL9A3-210ENST00000472880 PPP6R1Q9UPN7 881 aa31.34■■■□□ 2.61
COL9A3-210ENST00000472880 MYO3AQ8NEV4 1616 aa31.34■■■□□ 2.61
COL9A3-210ENST00000472880 NCOA1Q15788 1441 aa31.33■■■□□ 2.61
COL9A3-210ENST00000472880 RSPH4AQ5TD94 716 aa31.33■■■□□ 2.61
COL9A3-210ENST00000472880 ARHGEF5Q12774 1597 aa31.33■■■□□ 2.61
COL9A3-210ENST00000472880 ZNF142P52746 1687 aaPredicted RBP31.31■■■□□ 2.6
COL9A3-210ENST00000472880 PTPRKQ15262 1439 aa31.31■■■□□ 2.6
COL9A3-210ENST00000472880 CAMSAP1Q5T5Y3 1602 aa31.31■■■□□ 2.6
COL9A3-210ENST00000472880 MAP3K1Q13233 1512 aa31.3■■■□□ 2.6
COL9A3-210ENST00000472880 CEP170BQ9Y4F5 1589 aaPredicted RBP31.26■■■□□ 2.6
COL9A3-210ENST00000472880 FAM135AQ9P2D6 1515 aa31.24■■■□□ 2.59
COL9A3-210ENST00000472880 KIF3BO15066 747 aa31.24■■■□□ 2.59
COL9A3-210ENST00000472880 KDM5DQ9BY66 1539 aa31.24■■■□□ 2.59
COL9A3-210ENST00000472880 TSPY4P0CV99 314 aa31.23■■■□□ 2.59
COL9A3-210ENST00000472880 TSPY10P0CW01 314 aa31.23■■■□□ 2.59
COL9A3-210ENST00000472880 KANK4Q5T7N3 995 aaPredicted RBP31.21■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms