RNA–Protein interactions for RNA: ENST00000471245.1

CKS1B-204, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best)

Gene CKS1B, Length 1,166 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-204ENST00000471245 PPP1R37O75864 691 aa12.21□□□□□ -0.45
CKS1B-204ENST00000471245 DPY19L2Q6NUT2 758 aa12.19□□□□□ -0.46
CKS1B-204ENST00000471245 P3H3Q8IVL6 736 aa12.19□□□□□ -0.46
CKS1B-204ENST00000471245 TMEM121BQ9BXQ6 578 aaPredicted RBP12.19□□□□□ -0.46
CKS1B-204ENST00000471245 MAMSTRQ6ZN01 415 aa12.16□□□□□ -0.46
CKS1B-204ENST00000471245 BOLA1Q9Y3E2 137 aa12.16□□□□□ -0.46
CKS1B-204ENST00000471245 POTEJP0CG39 1038 aa12.14□□□□□ -0.47
CKS1B-204ENST00000471245 G3V3G9 751 aa12.12□□□□□ -0.47
CKS1B-204ENST00000471245 CADPS2Q86UW7 1296 aa12.12□□□□□ -0.47
CKS1B-204ENST00000471245 MICALL2Q8IY33 904 aa12.12□□□□□ -0.47
CKS1B-204ENST00000471245 WDR70Q9NW82 654 aa12.1□□□□□ -0.47
CKS1B-204ENST00000471245 NISCHQ9Y2I1 1504 aa12.05□□□□□ -0.48
CKS1B-204ENST00000471245 KCNV2Q8TDN2 545 aa12.04□□□□□ -0.48
CKS1B-204ENST00000471245 PDE4AP27815 886 aa12.03□□□□□ -0.48
CKS1B-204ENST00000471245 CRISPLD2Q9H0B8 497 aa12.02□□□□□ -0.49
CKS1B-204ENST00000471245 FAM163AQ96GL9 167 aaPredicted RBP12.01□□□□□ -0.49
CKS1B-204ENST00000471245 GPHNQ9NQX3 736 aaPredicted RBP12□□□□□ -0.49
CKS1B-204ENST00000471245 LCE2DQ5TA82 110 aaPredicted RBP11.99□□□□□ -0.49
CKS1B-204ENST00000471245 C3orf67Q6ZVT6 689 aa11.99□□□□□ -0.49
CKS1B-204ENST00000471245 SCUBE2Q9NQ36 999 aa11.99□□□□□ -0.49
CKS1B-204ENST00000471245 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.99□□□□□ -0.49
CKS1B-204ENST00000471245 NCKAP5LQ9HCH0 1330 aa11.98□□□□□ -0.49
CKS1B-204ENST00000471245 KIF3CO14782 793 aa11.96□□□□□ -0.49
CKS1B-204ENST00000471245 MFSD10Q14728 455 aa11.96□□□□□ -0.49
CKS1B-204ENST00000471245 TMC2Q8TDI7 906 aa11.95□□□□□ -0.5
CKS1B-204ENST00000471245 ARHGEF1Q92888 912 aaKnown RBP11.94□□□□□ -0.5
CKS1B-204ENST00000471245 FOXK1P85037 733 aa11.93□□□□□ -0.5
CKS1B-204ENST00000471245 E2F4Q16254 413 aa11.92□□□□□ -0.5
CKS1B-204ENST00000471245 TMEM92Q6UXU6 159 aa11.92□□□□□ -0.5
CKS1B-204ENST00000471245 LARP6Q9BRS8 491 aaKnown RBP11.92□□□□□ -0.5
CKS1B-204ENST00000471245 C2orf72A6NCS6 295 aa11.9□□□□□ -0.5
CKS1B-204ENST00000471245 DDX27Q96GQ7 796 aaKnown RBP11.9□□□□□ -0.5
CKS1B-204ENST00000471245 TULP1O00294 542 aaPredicted RBP11.87□□□□□ -0.51
CKS1B-204ENST00000471245 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.87□□□□□ -0.51
CKS1B-204ENST00000471245 LMOD2Q6P5Q4 547 aa11.86□□□□□ -0.51
CKS1B-204ENST00000471245 DSG2Q14126 1118 aa11.85□□□□□ -0.51
CKS1B-204ENST00000471245 PPP1R15BQ5SWA1 713 aa11.85□□□□□ -0.51
CKS1B-204ENST00000471245 CAMK2BQ13554 666 aa11.84□□□□□ -0.51
CKS1B-204ENST00000471245 CDAN1Q8IWY9 1227 aa11.84□□□□□ -0.51
CKS1B-204ENST00000471245 SLAIN1Q8ND83 568 aa11.83□□□□□ -0.52
CKS1B-204ENST00000471245 PLPP6Q8IY26 295 aa11.82□□□□□ -0.52
CKS1B-204ENST00000471245 ARIH1Q9Y4X5 557 aaPredicted RBP11.81□□□□□ -0.52
CKS1B-204ENST00000471245 SLC34A2O95436 690 aa11.8□□□□□ -0.52
CKS1B-204ENST00000471245 TESPA1A2RU30 521 aaPredicted RBP11.78□□□□□ -0.52
CKS1B-204ENST00000471245 SEMA3EO15041 775 aa11.75□□□□□ -0.53
CKS1B-204ENST00000471245 SNPHO15079 494 aa11.75□□□□□ -0.53
CKS1B-204ENST00000471245 PTCD2Q8WV60 388 aaKnown RBP11.73□□□□□ -0.53
CKS1B-204ENST00000471245 DOK7Q18PE1 504 aa11.71□□□□□ -0.53
CKS1B-204ENST00000471245 SMYD5Q6GMV2 418 aa11.7□□□□□ -0.54
CKS1B-204ENST00000471245 OXER1Q8TDS5 423 aa11.7□□□□□ -0.54
CKS1B-204ENST00000471245 ZSWIM6Q9HCJ5 1215 aa11.7□□□□□ -0.54
CKS1B-204ENST00000471245 EMILIN3Q9NT22 766 aa11.7□□□□□ -0.54
CKS1B-204ENST00000471245 TBC1D12O60347 775 aa11.69□□□□□ -0.54
CKS1B-204ENST00000471245 HOXB3P14651 431 aaPredicted RBP11.69□□□□□ -0.54
CKS1B-204ENST00000471245 ZC3H15Q8WU90 426 aaKnown RBP11.68□□□□□ -0.54
CKS1B-204ENST00000471245 RIMBP2O15034 1052 aa11.66□□□□□ -0.54
CKS1B-204ENST00000471245 SPDYE16A6NNV3 312 aaPredicted RBP11.64□□□□□ -0.55
CKS1B-204ENST00000471245 ST18O60284 1047 aa11.63□□□□□ -0.55
CKS1B-204ENST00000471245 MAP3K9P80192 1104 aa11.63□□□□□ -0.55
CKS1B-204ENST00000471245 TMEM132AQ24JP5 1023 aa11.63□□□□□ -0.55
CKS1B-204ENST00000471245 PCDHGA4Q9Y5G9 962 aa11.62□□□□□ -0.55
CKS1B-204ENST00000471245 MMRN1Q13201 1228 aa11.61□□□□□ -0.55
CKS1B-204ENST00000471245 GPR153Q6NV75 609 aa11.6□□□□□ -0.55
CKS1B-204ENST00000471245 ZNF710Q8N1W2 664 aa11.6□□□□□ -0.55
CKS1B-204ENST00000471245 ANO8Q9HCE9 1232 aaPredicted RBP11.6□□□□□ -0.55
CKS1B-204ENST00000471245 KDM4FA0A1W2PPD8 638 aa11.59□□□□□ -0.55
CKS1B-204ENST00000471245 DPYSL4O14531 572 aa11.59□□□□□ -0.55
CKS1B-204ENST00000471245 PDIA6Q15084 440 aa11.59□□□□□ -0.55
CKS1B-204ENST00000471245 UPF1Q92900 1129 aaKnown RBP eCLIP11.58□□□□□ -0.56
CKS1B-204ENST00000471245 ZMYND10O75800 440 aa11.57□□□□□ -0.56
CKS1B-204ENST00000471245 HOXB1P14653 301 aaPredicted RBP11.56□□□□□ -0.56
CKS1B-204ENST00000471245 SPNS2Q8IVW8 549 aa11.56□□□□□ -0.56
CKS1B-204ENST00000471245 PTGER2P43116 358 aa11.55□□□□□ -0.56
CKS1B-204ENST00000471245 ZNF316A6NFI3 1004 aaPredicted RBP11.54□□□□□ -0.56
CKS1B-204ENST00000471245 EVI5O60447 810 aa11.54□□□□□ -0.56
CKS1B-204ENST00000471245 BRPF1P55201 1214 aaPredicted RBP11.54□□□□□ -0.56
CKS1B-204ENST00000471245 ARSIQ5FYB1 569 aa11.53□□□□□ -0.56
CKS1B-204ENST00000471245 MLLT3P42568 568 aaPredicted RBP11.52□□□□□ -0.57
CKS1B-204ENST00000471245 SLC24A3Q9HC58 644 aa11.52□□□□□ -0.57
CKS1B-204ENST00000471245 GTF3C3Q9Y5Q9 886 aa11.52□□□□□ -0.57
CKS1B-204ENST00000471245 BARGINQ6ZT62 677 aa11.5□□□□□ -0.57
CKS1B-204ENST00000471245 GPIHBP1Q8IV16 184 aa11.49□□□□□ -0.57
CKS1B-204ENST00000471245 RBM26Q5T8P6 1007 aaKnown RBP11.47□□□□□ -0.57
CKS1B-204ENST00000471245 PSDA5PKW4 1024 aaPredicted RBP11.46□□□□□ -0.57
CKS1B-204ENST00000471245 NUDT7P0C024 238 aa11.46□□□□□ -0.57
CKS1B-204ENST00000471245 ERICH6Q7L0X2 663 aa11.46□□□□□ -0.57
CKS1B-204ENST00000471245 NEUROD2Q15784 382 aa11.45□□□□□ -0.58
CKS1B-204ENST00000471245 KHSRPQ92945 711 aaKnown RBP eCLIP11.44□□□□□ -0.58
CKS1B-204ENST00000471245 PHF14O94880 888 aa11.43□□□□□ -0.58
CKS1B-204ENST00000471245 EPAS1Q99814 870 aa11.42□□□□□ -0.58
CKS1B-204ENST00000471245 MARVELD3Q96A59 401 aa11.41□□□□□ -0.58
CKS1B-204ENST00000471245 JPH4Q96JJ6 628 aa11.41□□□□□ -0.58
CKS1B-204ENST00000471245 FOSBP53539 338 aa11.4□□□□□ -0.58
CKS1B-204ENST00000471245 AK7Q96M32 723 aa11.4□□□□□ -0.58
CKS1B-204ENST00000471245 TIMELESSQ9UNS1 1208 aa11.4□□□□□ -0.58
CKS1B-204ENST00000471245 LHX6Q9UPM6 363 aa11.4□□□□□ -0.58
CKS1B-204ENST00000471245 FBXW7Q969H0 707 aa11.39□□□□□ -0.59
CKS1B-204ENST00000471245 OSBPP22059 807 aa11.37□□□□□ -0.59
CKS1B-204ENST00000471245 DDX12PQ92771 950 aa11.37□□□□□ -0.59
CKS1B-204ENST00000471245 PCDHGA10Q9Y5H3 936 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms