RNA–Protein interactions for RNA: ENST00000470994.1

GPNMB-208, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 538 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-208ENST00000470994 NLRP6P59044 892 aa13.33□□□□□ -0.28
GPNMB-208ENST00000470994 VARS2Q5ST30 1063 aaKnown RBP13.33□□□□□ -0.28
GPNMB-208ENST00000470994 MS4A4AQ96JQ5 239 aa13.33□□□□□ -0.28
GPNMB-208ENST00000470994 TMEM92Q6UXU6 159 aa13.32□□□□□ -0.28
GPNMB-208ENST00000470994 BCL11BQ9C0K0 894 aaPredicted RBP13.27□□□□□ -0.29
GPNMB-208ENST00000470994 GPR153Q6NV75 609 aa13.25□□□□□ -0.29
GPNMB-208ENST00000470994 ZNF687Q8N1G0 1237 aa13.25□□□□□ -0.29
GPNMB-208ENST00000470994 STK24Q9Y6E0 443 aa13.24□□□□□ -0.29
GPNMB-208ENST00000470994 RNF166Q96A37 237 aaPredicted RBP13.23□□□□□ -0.29
GPNMB-208ENST00000470994 PTGER2P43116 358 aa13.2□□□□□ -0.3
GPNMB-208ENST00000470994 FBXO22Q8NEZ5 403 aa13.2□□□□□ -0.3
GPNMB-208ENST00000470994 STK25O00506 426 aa13.19□□□□□ -0.3
GPNMB-208ENST00000470994 MYT1LQ9UL68 1186 aa13.19□□□□□ -0.3
GPNMB-208ENST00000470994 ARSIQ5FYB1 569 aa13.18□□□□□ -0.3
GPNMB-208ENST00000470994 ECM2O94769 699 aaPredicted RBP13.15□□□□□ -0.3
GPNMB-208ENST00000470994 MFRPQ9BY79 579 aa13.14□□□□□ -0.31
GPNMB-208ENST00000470994 ZNF316A6NFI3 1004 aaPredicted RBP13.13□□□□□ -0.31
GPNMB-208ENST00000470994 C2orf72A6NCS6 295 aa13.07□□□□□ -0.32
GPNMB-208ENST00000470994 ANKRD13DQ6ZTN6 518 aa13.07□□□□□ -0.32
GPNMB-208ENST00000470994 KIF3CO14782 793 aa13.06□□□□□ -0.32
GPNMB-208ENST00000470994 TMC2Q8TDI7 906 aa13.06□□□□□ -0.32
GPNMB-208ENST00000470994 KHSRPQ92945 711 aaKnown RBP eCLIP13.05□□□□□ -0.32
GPNMB-208ENST00000470994 PBX2P40425 430 aa13.04□□□□□ -0.32
GPNMB-208ENST00000470994 LSM11P83369 360 aaKnown RBP eCLIP13.03□□□□□ -0.32
GPNMB-208ENST00000470994 SLC34A2O95436 690 aa13.02□□□□□ -0.33
GPNMB-208ENST00000470994 NUDT7P0C024 238 aa13.01□□□□□ -0.33
GPNMB-208ENST00000470994 PCDHGA4Q9Y5G9 962 aa12.98□□□□□ -0.33
GPNMB-208ENST00000470994 RGL2O15211 777 aa12.97□□□□□ -0.33
GPNMB-208ENST00000470994 PSDA5PKW4 1024 aaPredicted RBP12.95□□□□□ -0.34
GPNMB-208ENST00000470994 PKD2Q13563 968 aa12.94□□□□□ -0.34
GPNMB-208ENST00000470994 LHX6Q9UPM6 363 aa12.94□□□□□ -0.34
GPNMB-208ENST00000470994 AXIN2Q9Y2T1 843 aa12.85□□□□□ -0.35
GPNMB-208ENST00000470994 ARHGAP33O14559 1287 aa12.84□□□□□ -0.35
GPNMB-208ENST00000470994 PPP1R37O75864 691 aa12.84□□□□□ -0.35
GPNMB-208ENST00000470994 ABCC9O60706 1549 aa12.83□□□□□ -0.36
GPNMB-208ENST00000470994 PTCD2Q8WV60 388 aaKnown RBP12.82□□□□□ -0.36
GPNMB-208ENST00000470994 POTEEQ6S8J3 1075 aa12.81□□□□□ -0.36
GPNMB-208ENST00000470994 HCSTQ9UBK5 93 aa12.81□□□□□ -0.36
GPNMB-208ENST00000470994 TBC1D12O60347 775 aa12.8□□□□□ -0.36
GPNMB-208ENST00000470994 FOXK1P85037 733 aa12.8□□□□□ -0.36
GPNMB-208ENST00000470994 ADGRD1Q6QNK2 874 aa12.8□□□□□ -0.36
GPNMB-208ENST00000470994 HS6ST3Q8IZP7 471 aa12.79□□□□□ -0.36
GPNMB-208ENST00000470994 PLPP6Q8IY26 295 aa12.78□□□□□ -0.36
GPNMB-208ENST00000470994 PPP4R3BQ5MIZ7 849 aa12.77□□□□□ -0.37
GPNMB-208ENST00000470994 KCNH8Q96L42 1107 aa12.77□□□□□ -0.37
GPNMB-208ENST00000470994 GPHNQ9NQX3 736 aaPredicted RBP12.77□□□□□ -0.37
GPNMB-208ENST00000470994 TK2O00142 265 aa12.76□□□□□ -0.37
GPNMB-208ENST00000470994 KDM4FA0A1W2PPD8 638 aa12.73□□□□□ -0.37
GPNMB-208ENST00000470994 STAC3Q96MF2 364 aa12.73□□□□□ -0.37
GPNMB-208ENST00000470994 PLA2G2EQ9NZK7 142 aa12.73□□□□□ -0.37
GPNMB-208ENST00000470994 RYDENQ9NUL5 291 aaKnown RBP12.72□□□□□ -0.37
GPNMB-208ENST00000470994 DSG2Q14126 1118 aa12.7□□□□□ -0.38
GPNMB-208ENST00000470994 CHGAP10645 457 aaKnown RBP12.67□□□□□ -0.38
GPNMB-208ENST00000470994 PSEN2P49810 448 aa12.67□□□□□ -0.38
GPNMB-208ENST00000470994 DMRTA1Q5VZB9 504 aa12.66□□□□□ -0.38
GPNMB-208ENST00000470994 HRO43593 1189 aa12.65□□□□□ -0.38
GPNMB-208ENST00000470994 KCNK17Q96T54 332 aa12.63□□□□□ -0.39
GPNMB-208ENST00000470994 KCTD12Q96CX2 325 aaKnown RBP12.6□□□□□ -0.39
GPNMB-208ENST00000470994 DNAJC5Q9H3Z4 198 aa12.6□□□□□ -0.39
GPNMB-208ENST00000470994 OXER1Q8TDS5 423 aa12.59□□□□□ -0.39
GPNMB-208ENST00000470994 UPF1Q92900 1129 aaKnown RBP eCLIP12.58□□□□□ -0.4
GPNMB-208ENST00000470994 ZNF454Q8N9F8 522 aa12.56□□□□□ -0.4
GPNMB-208ENST00000470994 PPP1R15BQ5SWA1 713 aa12.55□□□□□ -0.4
GPNMB-208ENST00000470994 CRISPLD2Q9H0B8 497 aa12.55□□□□□ -0.4
GPNMB-208ENST00000470994 BCL2L12Q9HB09 334 aa12.54□□□□□ -0.4
GPNMB-208ENST00000470994 VPS9D1Q9Y2B5 631 aa12.54□□□□□ -0.4
GPNMB-208ENST00000470994 SLC4A5Q9BY07 1137 aa12.52□□□□□ -0.41
GPNMB-208ENST00000470994 PTPREP23469 700 aa12.51□□□□□ -0.41
GPNMB-208ENST00000470994 PDE4AP27815 886 aa12.51□□□□□ -0.41
GPNMB-208ENST00000470994 NKX1-1Q15270 411 aaPredicted RBP12.51□□□□□ -0.41
GPNMB-208ENST00000470994 CCDC180Q9P1Z9 1646 aa12.51□□□□□ -0.41
GPNMB-208ENST00000470994 GOLGA8CPA6NN73 597 aa12.48□□□□□ -0.41
GPNMB-208ENST00000470994 FOSBP53539 338 aa12.48□□□□□ -0.41
GPNMB-208ENST00000470994 PTPN5P54829 565 aa12.46□□□□□ -0.41
GPNMB-208ENST00000470994 JPH4Q96JJ6 628 aa12.46□□□□□ -0.41
GPNMB-208ENST00000470994 MRPL50Q8N5N7 158 aaKnown RBP12.43□□□□□ -0.42
GPNMB-208ENST00000470994 EVI5O60447 810 aa12.42□□□□□ -0.42
GPNMB-208ENST00000470994 ZDHHC16Q969W1 377 aa12.42□□□□□ -0.42
GPNMB-208ENST00000470994 NBPF3Q9H094 633 aa12.42□□□□□ -0.42
GPNMB-208ENST00000470994 ANO8Q9HCE9 1232 aaPredicted RBP12.42□□□□□ -0.42
GPNMB-208ENST00000470994 NCKAP5LQ9HCH0 1330 aa12.41□□□□□ -0.42
GPNMB-208ENST00000470994 DDX27Q96GQ7 796 aaKnown RBP12.41□□□□□ -0.42
GPNMB-208ENST00000470994 ZBED2Q9BTP6 218 aa12.41□□□□□ -0.42
GPNMB-208ENST00000470994 THSD4Q6ZMP0 1018 aa12.4□□□□□ -0.42
GPNMB-208ENST00000470994 WNT2BQ93097 391 aa12.4□□□□□ -0.42
GPNMB-208ENST00000470994 RGS20O76081 388 aa12.39□□□□□ -0.43
GPNMB-208ENST00000470994 MAP3K9P80192 1104 aa12.39□□□□□ -0.43
GPNMB-208ENST00000470994 IFFO2Q5TF58 517 aa12.39□□□□□ -0.43
GPNMB-208ENST00000470994 LARP6Q9BRS8 491 aaKnown RBP12.39□□□□□ -0.43
GPNMB-208ENST00000470994 BHMG1C9JSJ3 638 aaPredicted RBP12.38□□□□□ -0.43
GPNMB-208ENST00000470994 ADAM33Q9BZ11 813 aa12.35□□□□□ -0.43
GPNMB-208ENST00000470994 GTPBP6O43824 516 aaPredicted RBP12.33□□□□□ -0.44
GPNMB-208ENST00000470994 PPP1R3GB7ZBB8 358 aa12.32□□□□□ -0.44
GPNMB-208ENST00000470994 MFSD10Q14728 455 aa12.32□□□□□ -0.44
GPNMB-208ENST00000470994 FBXW7Q969H0 707 aa12.29□□□□□ -0.44
GPNMB-208ENST00000470994 A0A0G2JS52 829 aa12.28□□□□□ -0.44
GPNMB-208ENST00000470994 ANKK1Q8NFD2 765 aa12.28□□□□□ -0.44
GPNMB-208ENST00000470994 RABGEF1Q9UJ41 708 aa12.28□□□□□ -0.44
GPNMB-208ENST00000470994 DCAF8L2P0C7V8 631 aa12.27□□□□□ -0.45
GPNMB-208ENST00000470994 TYW1BQ6NUM6 668 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms