RNA–Protein interactions for RNA: ENST00000470241.2

SMC1A-206, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 838 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-206ENST00000470241 PREX2Q70Z35 1606 aa16.39■□□□□ 0.21
SMC1A-206ENST00000470241 ARHGAP5Q13017 1502 aa16.39■□□□□ 0.21
SMC1A-206ENST00000470241 CFDP1Q9UEE9 299 aaPredicted RBP16.38■□□□□ 0.21
SMC1A-206ENST00000470241 CDC42BPAQ5VT25 1732 aa16.38■□□□□ 0.21
SMC1A-206ENST00000470241 AKNAQ7Z591 1439 aa16.37■□□□□ 0.21
SMC1A-206ENST00000470241 MYOM3Q5VTT5 1437 aa16.36■□□□□ 0.21
SMC1A-206ENST00000470241 CDC42BPBQ9Y5S2 1711 aa16.36■□□□□ 0.21
SMC1A-206ENST00000470241 COL17A1Q9UMD9 1497 aaPredicted RBP16.35■□□□□ 0.21
SMC1A-206ENST00000470241 ZNF777Q9ULD5 760 aaPredicted RBP16.34■□□□□ 0.21
SMC1A-206ENST00000470241 ZNF644Q9H582 1327 aaPredicted RBP16.33■□□□□ 0.2
SMC1A-206ENST00000470241 MIA2Q96PC5 1412 aa16.33■□□□□ 0.2
SMC1A-206ENST00000470241 CFAP74Q9C0B2 1584 aa16.33■□□□□ 0.2
SMC1A-206ENST00000470241 ITSN2Q9NZM3 1697 aa16.33■□□□□ 0.2
SMC1A-206ENST00000470241 ADGRL1O94910 1474 aa16.32■□□□□ 0.2
SMC1A-206ENST00000470241 SAMD9LQ8IVG5 1584 aa16.31■□□□□ 0.2
SMC1A-206ENST00000470241 SCAPERQ9BY12 1400 aa16.31■□□□□ 0.2
SMC1A-206ENST00000470241 ARHGEF12Q9NZN5 1544 aa16.3■□□□□ 0.2
SMC1A-206ENST00000470241 FGD6Q6ZV73 1430 aa16.3■□□□□ 0.2
SMC1A-206ENST00000470241 ABCC1P33527 1531 aa16.29■□□□□ 0.2
SMC1A-206ENST00000470241 KIAA1107Q9UPP5 1409 aa16.29■□□□□ 0.2
SMC1A-206ENST00000470241 DENND4BO75064 1496 aaPredicted RBP16.29■□□□□ 0.2
SMC1A-206ENST00000470241 KDM6BO15054 1643 aa16.28■□□□□ 0.2
SMC1A-206ENST00000470241 RAPGEF3O95398 923 aa16.28■□□□□ 0.2
SMC1A-206ENST00000470241 CAMSAP2Q08AD1 1489 aa16.28■□□□□ 0.2
SMC1A-206ENST00000470241 PLEKHH2Q8IVE3 1493 aa16.28■□□□□ 0.2
SMC1A-206ENST00000470241 HNRNPMP52272 730 aaKnown RBP eCLIP16.27■□□□□ 0.2
SMC1A-206ENST00000470241 POGZQ7Z3K3 1410 aa16.27■□□□□ 0.19
SMC1A-206ENST00000470241 MBD5Q9P267 1494 aa16.26■□□□□ 0.19
SMC1A-206ENST00000470241 TRAPPC8Q9Y2L5 1435 aa16.26■□□□□ 0.19
SMC1A-206ENST00000470241 SYCP2Q9BX26 1530 aa16.25■□□□□ 0.19
SMC1A-206ENST00000470241 TCOF1Q13428 1488 aaKnown RBP16.25■□□□□ 0.19
SMC1A-206ENST00000470241 AFAP1Q8N556 730 aa16.25■□□□□ 0.19
SMC1A-206ENST00000470241 FRMPD1Q5SYB0 1578 aa16.25■□□□□ 0.19
SMC1A-206ENST00000470241 PTPN23Q9H3S7 1636 aa16.23■□□□□ 0.19
SMC1A-206ENST00000470241 RRBP1Q9P2E9 1410 aaKnown RBP16.22■□□□□ 0.19
SMC1A-206ENST00000470241 ZNF518AQ6AHZ1 1483 aa16.22■□□□□ 0.19
SMC1A-206ENST00000470241 RICTORQ6R327 1708 aa16.2■□□□□ 0.18
SMC1A-206ENST00000470241 FAM50AQ14320 339 aaKnown RBP16.2■□□□□ 0.18
SMC1A-206ENST00000470241 KDM5CP41229 1560 aa16.19■□□□□ 0.18
SMC1A-206ENST00000470241 ARHGEF5Q12774 1597 aa16.19■□□□□ 0.18
SMC1A-206ENST00000470241 RSPH4AQ5TD94 716 aa16.19■□□□□ 0.18
SMC1A-206ENST00000470241 ZMYM4Q5VZL5 1548 aa16.19■□□□□ 0.18
SMC1A-206ENST00000470241 CCDC141Q6ZP82 1450 aa16.18■□□□□ 0.18
SMC1A-206ENST00000470241 ABCC5O15440 1437 aa16.18■□□□□ 0.18
SMC1A-206ENST00000470241 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.17■□□□□ 0.18
SMC1A-206ENST00000470241 MLH3Q9UHC1 1453 aa16.16■□□□□ 0.18
SMC1A-206ENST00000470241 SPAG9O60271 1321 aaKnown RBP16.16■□□□□ 0.18
SMC1A-206ENST00000470241 MAGI2Q86UL8 1455 aa16.16■□□□□ 0.18
SMC1A-206ENST00000470241 DAPK1P53355 1430 aa16.15■□□□□ 0.18
SMC1A-206ENST00000470241 YEATS2Q9ULM3 1422 aa16.15■□□□□ 0.18
SMC1A-206ENST00000470241 TSPY4P0CV99 314 aa16.13■□□□□ 0.17
SMC1A-206ENST00000470241 TSPY10P0CW01 314 aa16.13■□□□□ 0.17
SMC1A-206ENST00000470241 HECW2Q9P2P5 1572 aa16.13■□□□□ 0.17
SMC1A-206ENST00000470241 DNMT1P26358 1616 aaKnown RBP16.12■□□□□ 0.17
SMC1A-206ENST00000470241 RTEL1-TNFRSF6BF6WH68 1400 aa16.12■□□□□ 0.17
SMC1A-206ENST00000470241 MYT1LQ9UL68 1186 aa16.12■□□□□ 0.17
SMC1A-206ENST00000470241 ZFYVE16Q7Z3T8 1539 aa16.12■□□□□ 0.17
SMC1A-206ENST00000470241 PTPRKQ15262 1439 aa16.11■□□□□ 0.17
SMC1A-206ENST00000470241 C9orf84Q5VXU9 1444 aa16.11■□□□□ 0.17
SMC1A-206ENST00000470241 INO80Q9ULG1 1556 aaPredicted RBP16.11■□□□□ 0.17
SMC1A-206ENST00000470241 SHANK2Q9UPX8 1470 aa16.1■□□□□ 0.17
SMC1A-206ENST00000470241 ATP7AQ04656 1500 aa16.1■□□□□ 0.17
SMC1A-206ENST00000470241 ARHGEF40Q8TER5 1519 aa16.09■□□□□ 0.17
SMC1A-206ENST00000470241 MAST1Q9Y2H9 1570 aa16.09■□□□□ 0.17
SMC1A-206ENST00000470241 KIDINS220Q9ULH0 1771 aa16.09■□□□□ 0.17
SMC1A-206ENST00000470241 ITGAEP38570 1179 aa16.08■□□□□ 0.16
SMC1A-206ENST00000470241 DIP2CQ9Y2E4 1556 aa16.08■□□□□ 0.16
SMC1A-206ENST00000470241 CHIC2Q9UKJ5 165 aa16.07■□□□□ 0.16
SMC1A-206ENST00000470241 ATP10AO60312 1499 aa16.07■□□□□ 0.16
SMC1A-206ENST00000470241 ABCA6Q8N139 1617 aa16.07■□□□□ 0.16
SMC1A-206ENST00000470241 CROCC2H7BZ55 1655 aa16.07■□□□□ 0.16
SMC1A-206ENST00000470241 ADGRL2O95490 1459 aa16.04■□□□□ 0.16
SMC1A-206ENST00000470241 NCOA1Q15788 1441 aa16.03■□□□□ 0.16
SMC1A-206ENST00000470241 ANKRD30AQ9BXX3 1397 aa16.03■□□□□ 0.16
SMC1A-206ENST00000470241 PLXNC1O60486 1568 aa16.02■□□□□ 0.16
SMC1A-206ENST00000470241 REREQ9P2R6 1566 aa16.02■□□□□ 0.16
SMC1A-206ENST00000470241 RRP7BPQ9NSQ0 103 aa16.02■□□□□ 0.16
SMC1A-206ENST00000470241 A2MP01023 1474 aa16.02■□□□□ 0.15
SMC1A-206ENST00000470241 ROCK1Q13464 1354 aa16.01■□□□□ 0.15
SMC1A-206ENST00000470241 DHX29Q7Z478 1369 aaKnown RBP16.01■□□□□ 0.15
SMC1A-206ENST00000470241 KIF15Q9NS87 1388 aa16.01■□□□□ 0.15
SMC1A-206ENST00000470241 SIGLEC1Q9BZZ2 1709 aa15.99■□□□□ 0.15
SMC1A-206ENST00000470241 ADGBQ8N7X0 1667 aa15.98■□□□□ 0.15
SMC1A-206ENST00000470241 AGLP35573 1532 aa15.98■□□□□ 0.15
SMC1A-206ENST00000470241 DUOX2Q9NRD8 1548 aa15.98■□□□□ 0.15
SMC1A-206ENST00000470241 ARID4BQ4LE39 1312 aaPredicted RBP15.96■□□□□ 0.15
SMC1A-206ENST00000470241 ERBINQ96RT1 1412 aa15.94■□□□□ 0.14
SMC1A-206ENST00000470241 ANKRD50Q9ULJ7 1429 aa15.94■□□□□ 0.14
SMC1A-206ENST00000470241 KIF3BO15066 747 aa15.93■□□□□ 0.14
SMC1A-206ENST00000470241 TRIM26Q12899 539 aaPredicted RBP15.93■□□□□ 0.14
SMC1A-206ENST00000470241 NAIPQ13075 1403 aa15.93■□□□□ 0.14
SMC1A-206ENST00000470241 MLECQ14165 292 aa15.92■□□□□ 0.14
SMC1A-206ENST00000470241 HFM1A2PYH4 1435 aa15.92■□□□□ 0.14
SMC1A-206ENST00000470241 GGT6Q6P531 493 aa15.89■□□□□ 0.13
SMC1A-206ENST00000470241 EIF2AK4Q9P2K8 1649 aaKnown RBP15.89■□□□□ 0.13
SMC1A-206ENST00000470241 BCORL1Q5H9F3 1711 aa15.88■□□□□ 0.13
SMC1A-206ENST00000470241 KDM4FA0A1W2PPD8 638 aa15.87■□□□□ 0.13
SMC1A-206ENST00000470241 RNF17Q9BXT8 1623 aaKnown RBP15.86■□□□□ 0.13
SMC1A-206ENST00000470241 PPP6R1Q9UPN7 881 aa15.85■□□□□ 0.13
SMC1A-206ENST00000470241 MROH1Q8NDA8 1641 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms