RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 SIGLEC1Q9BZZ2 1709 aa26.64■■□□□ 1.85
COL9A3-208ENST00000469802 CDC42BPBQ9Y5S2 1711 aa26.64■■□□□ 1.85
COL9A3-208ENST00000469802 HECW2Q9P2P5 1572 aa26.63■■□□□ 1.85
COL9A3-208ENST00000469802 ZFYVE16Q7Z3T8 1539 aa26.63■■□□□ 1.85
COL9A3-208ENST00000469802 PREX2Q70Z35 1606 aa26.62■■□□□ 1.85
COL9A3-208ENST00000469802 MAGI2Q86UL8 1455 aa26.62■■□□□ 1.85
COL9A3-208ENST00000469802 MADDQ8WXG6 1647 aa26.61■■□□□ 1.85
COL9A3-208ENST00000469802 SCAPERQ9BY12 1400 aa26.59■■□□□ 1.85
COL9A3-208ENST00000469802 ARHGAP5Q13017 1502 aa26.58■■□□□ 1.85
COL9A3-208ENST00000469802 YEATS2Q9ULM3 1422 aa26.57■■□□□ 1.84
COL9A3-208ENST00000469802 CDC42BPAQ5VT25 1732 aa26.57■■□□□ 1.84
COL9A3-208ENST00000469802 PTPRMP28827 1452 aa26.55■■□□□ 1.84
COL9A3-208ENST00000469802 KDM5CP41229 1560 aa26.55■■□□□ 1.84
COL9A3-208ENST00000469802 EFCAB2Q5VUJ9 269 aa26.53■■□□□ 1.84
COL9A3-208ENST00000469802 RIMS1Q86UR5 1692 aaKnown RBP26.51■■□□□ 1.83
COL9A3-208ENST00000469802 ZNF518AQ6AHZ1 1483 aa26.51■■□□□ 1.83
COL9A3-208ENST00000469802 ABCC1P33527 1531 aa26.5■■□□□ 1.83
COL9A3-208ENST00000469802 ITSN2Q9NZM3 1697 aa26.5■■□□□ 1.83
COL9A3-208ENST00000469802 ARID4BQ4LE39 1312 aaPredicted RBP26.46■■□□□ 1.83
COL9A3-208ENST00000469802 FER1L4A9Z1Z3 1794 aa26.45■■□□□ 1.82
COL9A3-208ENST00000469802 ATP10AO60312 1499 aa26.43■■□□□ 1.82
COL9A3-208ENST00000469802 C9orf84Q5VXU9 1444 aa26.43■■□□□ 1.82
COL9A3-208ENST00000469802 DIP2CQ9Y2E4 1556 aa26.42■■□□□ 1.82
COL9A3-208ENST00000469802 CEP162Q5TB80 1403 aa26.42■■□□□ 1.82
COL9A3-208ENST00000469802 ARHGEF12Q9NZN5 1544 aa26.42■■□□□ 1.82
COL9A3-208ENST00000469802 REREQ9P2R6 1566 aa26.41■■□□□ 1.82
COL9A3-208ENST00000469802 ABCA6Q8N139 1617 aa26.4■■□□□ 1.82
COL9A3-208ENST00000469802 SAMD9LQ8IVG5 1584 aa26.39■■□□□ 1.82
COL9A3-208ENST00000469802 MLH3Q9UHC1 1453 aa26.37■■□□□ 1.81
COL9A3-208ENST00000469802 GPATCH8Q9UKJ3 1502 aaKnown RBP26.37■■□□□ 1.81
COL9A3-208ENST00000469802 KIDINS220Q9ULH0 1771 aa26.35■■□□□ 1.81
COL9A3-208ENST00000469802 AFAP1Q8N556 730 aa26.35■■□□□ 1.81
COL9A3-208ENST00000469802 TRAPPC8Q9Y2L5 1435 aa26.35■■□□□ 1.81
COL9A3-208ENST00000469802 EHBP1L1Q8N3D4 1523 aa26.34■■□□□ 1.81
COL9A3-208ENST00000469802 LMTK3Q96Q04 1460 aa26.31■■□□□ 1.8
COL9A3-208ENST00000469802 SYCP2Q9BX26 1530 aa26.31■■□□□ 1.8
COL9A3-208ENST00000469802 TIAM1Q13009 1591 aa26.29■■□□□ 1.8
COL9A3-208ENST00000469802 MTUS2Q5JR59 1369 aa26.28■■□□□ 1.8
COL9A3-208ENST00000469802 AGLP35573 1532 aa26.27■■□□□ 1.8
COL9A3-208ENST00000469802 INO80Q9ULG1 1556 aaPredicted RBP26.24■■□□□ 1.79
COL9A3-208ENST00000469802 PLEKHH2Q8IVE3 1493 aa26.23■■□□□ 1.79
COL9A3-208ENST00000469802 KIAA1107Q9UPP5 1409 aa26.23■■□□□ 1.79
COL9A3-208ENST00000469802 CCNB3Q8WWL7 1395 aa26.22■■□□□ 1.79
COL9A3-208ENST00000469802 MLECQ14165 292 aa26.22■■□□□ 1.79
COL9A3-208ENST00000469802 SUPT6HQ7KZ85 1726 aaKnown RBP26.19■■□□□ 1.78
COL9A3-208ENST00000469802 ATP7AQ04656 1500 aa26.19■■□□□ 1.78
COL9A3-208ENST00000469802 PREX1Q8TCU6 1659 aa26.19■■□□□ 1.78
COL9A3-208ENST00000469802 ZNF777Q9ULD5 760 aaPredicted RBP26.16■■□□□ 1.78
COL9A3-208ENST00000469802 PLXNC1O60486 1568 aa26.16■■□□□ 1.78
COL9A3-208ENST00000469802 C3P01024 1663 aa26.15■■□□□ 1.78
COL9A3-208ENST00000469802 VPS8Q8N3P4 1428 aa26.15■■□□□ 1.78
COL9A3-208ENST00000469802 CFDP1Q9UEE9 299 aaPredicted RBP26.15■■□□□ 1.78
COL9A3-208ENST00000469802 MYT1LQ9UL68 1186 aa26.14■■□□□ 1.78
COL9A3-208ENST00000469802 NCOA2Q15596 1464 aa26.11■■□□□ 1.77
COL9A3-208ENST00000469802 LOC105371045A0A1W2PR82 267 aa26.11■■□□□ 1.77
COL9A3-208ENST00000469802 HNRNPMP52272 730 aaKnown RBP eCLIP26.11■■□□□ 1.77
COL9A3-208ENST00000469802 ADGBQ8N7X0 1667 aa26.11■■□□□ 1.77
COL9A3-208ENST00000469802 MBD5Q9P267 1494 aa26.11■■□□□ 1.77
COL9A3-208ENST00000469802 SPAG9O60271 1321 aaKnown RBP26.09■■□□□ 1.77
COL9A3-208ENST00000469802 MROH2AA6NES4 1674 aa26.09■■□□□ 1.77
COL9A3-208ENST00000469802 SETD1BQ9UPS6 1966 aaKnown RBP26.07■■□□□ 1.76
COL9A3-208ENST00000469802 PLPPR3Q6T4P5 718 aa26.07■■□□□ 1.76
COL9A3-208ENST00000469802 MAP3K1Q13233 1512 aa26.05■■□□□ 1.76
COL9A3-208ENST00000469802 LRRC9Q6ZRR7 1453 aa26.04■■□□□ 1.76
COL9A3-208ENST00000469802 ZNF644Q9H582 1327 aaPredicted RBP26.04■■□□□ 1.76
COL9A3-208ENST00000469802 CNTLNQ9NXG0 1405 aa26.03■■□□□ 1.76
COL9A3-208ENST00000469802 A2MP01023 1474 aa26.03■■□□□ 1.76
COL9A3-208ENST00000469802 CAMSAP2Q08AD1 1489 aa26.03■■□□□ 1.76
COL9A3-208ENST00000469802 CEBPAP49715 358 aaPredicted RBP26.02■■□□□ 1.76
COL9A3-208ENST00000469802 HSPA2P54652 639 aa26.01■■□□□ 1.75
COL9A3-208ENST00000469802 ILDR1Q86SU0 546 aaPredicted RBP26■■□□□ 1.75
COL9A3-208ENST00000469802 RTEL1-TNFRSF6BF6WH68 1400 aa25.99■■□□□ 1.75
COL9A3-208ENST00000469802 CLTCQ00610 1675 aaKnown RBP25.99■■□□□ 1.75
COL9A3-208ENST00000469802 ARHGEF5Q12774 1597 aa25.99■■□□□ 1.75
COL9A3-208ENST00000469802 CCDC141Q6ZP82 1450 aa25.98■■□□□ 1.75
COL9A3-208ENST00000469802 STRCQ7RTU9 1775 aa25.96■■□□□ 1.75
COL9A3-208ENST00000469802 UHRF1BP1Q6BDS2 1440 aa25.96■■□□□ 1.75
COL9A3-208ENST00000469802 ESF1Q9H501 851 aaKnown RBP25.9■■□□□ 1.74
COL9A3-208ENST00000469802 NPATQ14207 1427 aa25.89■■□□□ 1.74
COL9A3-208ENST00000469802 MAST1Q9Y2H9 1570 aa25.87■■□□□ 1.73
COL9A3-208ENST00000469802 ZNF142P52746 1687 aaPredicted RBP25.87■■□□□ 1.73
COL9A3-208ENST00000469802 MYO3AQ8NEV4 1616 aa25.85■■□□□ 1.73
COL9A3-208ENST00000469802 ZMYM3Q14202 1370 aa25.85■■□□□ 1.73
COL9A3-208ENST00000469802 DHX29Q7Z478 1369 aaKnown RBP25.85■■□□□ 1.73
COL9A3-208ENST00000469802 KANK4Q5T7N3 995 aaPredicted RBP25.85■■□□□ 1.73
COL9A3-208ENST00000469802 MYOM3Q5VTT5 1437 aa25.85■■□□□ 1.73
COL9A3-208ENST00000469802 FAM135AQ9P2D6 1515 aa25.84■■□□□ 1.73
COL9A3-208ENST00000469802 RSPH4AQ5TD94 716 aa25.84■■□□□ 1.73
COL9A3-208ENST00000469802 MIA2Q96PC5 1412 aa25.83■■□□□ 1.73
COL9A3-208ENST00000469802 PTPRKQ15262 1439 aa25.8■■□□□ 1.72
COL9A3-208ENST00000469802 PPP6R1Q9UPN7 881 aa25.79■■□□□ 1.72
COL9A3-208ENST00000469802 CROCC2H7BZ55 1655 aa25.79■■□□□ 1.72
COL9A3-208ENST00000469802 RNF17Q9BXT8 1623 aaKnown RBP25.77■■□□□ 1.72
COL9A3-208ENST00000469802 GGT6Q6P531 493 aa25.77■■□□□ 1.72
COL9A3-208ENST00000469802 KDM5DQ9BY66 1539 aa25.77■■□□□ 1.72
COL9A3-208ENST00000469802 FBXO41Q8TF61 875 aa25.76■■□□□ 1.71
COL9A3-208ENST00000469802 EIF2AK4Q9P2K8 1649 aaKnown RBP25.76■■□□□ 1.71
COL9A3-208ENST00000469802 CEP170BQ9Y4F5 1589 aaPredicted RBP25.75■■□□□ 1.71
COL9A3-208ENST00000469802 NCOA1Q15788 1441 aa25.75■■□□□ 1.71
COL9A3-208ENST00000469802 PTPN23Q9H3S7 1636 aa25.74■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms