RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 HOXB3P14651 431 aaPredicted RBP10.8□□□□□ -0.68
SYNE1-219ENST00000469439 CDAN1Q8IWY9 1227 aa10.8□□□□□ -0.68
SYNE1-219ENST00000469439 RB1CC1Q8TDY2 1594 aa10.78□□□□□ -0.68
SYNE1-219ENST00000469439 HS6ST3Q8IZP7 471 aa10.78□□□□□ -0.68
SYNE1-219ENST00000469439 MARVELD3Q96A59 401 aa10.77□□□□□ -0.69
SYNE1-219ENST00000469439 DOK7Q18PE1 504 aa10.74□□□□□ -0.69
SYNE1-219ENST00000469439 EMP3P54852 163 aa10.73□□□□□ -0.69
SYNE1-219ENST00000469439 ZNF710Q8N1W2 664 aa10.7□□□□□ -0.7
SYNE1-219ENST00000469439 CHGAP10645 457 aaKnown RBP10.69□□□□□ -0.7
SYNE1-219ENST00000469439 HOXB1P14653 301 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-219ENST00000469439 PPP1R37O75864 691 aa10.68□□□□□ -0.7
SYNE1-219ENST00000469439 DNAJC5Q9H3Z4 198 aa10.68□□□□□ -0.7
SYNE1-219ENST00000469439 KIF3CO14782 793 aa10.67□□□□□ -0.7
SYNE1-219ENST00000469439 RIMBP2O15034 1052 aa10.67□□□□□ -0.7
SYNE1-219ENST00000469439 POTEB3A0JP26 581 aa10.65□□□□□ -0.7
SYNE1-219ENST00000469439 POTEBQ6S5H4 581 aa10.65□□□□□ -0.7
SYNE1-219ENST00000469439 HS3ST6Q96QI5 342 aa10.65□□□□□ -0.7
SYNE1-219ENST00000469439 ZSWIM6Q9HCJ5 1215 aa10.65□□□□□ -0.7
SYNE1-219ENST00000469439 FAM205CA6NFA0 338 aa10.64□□□□□ -0.71
SYNE1-219ENST00000469439 C2orf72A6NCS6 295 aa10.63□□□□□ -0.71
SYNE1-219ENST00000469439 NKX1-1Q15270 411 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-219ENST00000469439 GPR153Q6NV75 609 aa10.6□□□□□ -0.71
SYNE1-219ENST00000469439 TMC2Q8TDI7 906 aa10.57□□□□□ -0.72
SYNE1-219ENST00000469439 KRTAP3-3Q9BYR6 98 aa10.56□□□□□ -0.72
SYNE1-219ENST00000469439 KRTAP3-2Q9BYR7 98 aa10.56□□□□□ -0.72
SYNE1-219ENST00000469439 ERBB3P21860 1342 aa10.56□□□□□ -0.72
SYNE1-219ENST00000469439 ARSIQ5FYB1 569 aa10.54□□□□□ -0.72
SYNE1-219ENST00000469439 SPNS2Q8IVW8 549 aa10.54□□□□□ -0.72
SYNE1-219ENST00000469439 RYDENQ9NUL5 291 aaKnown RBP10.54□□□□□ -0.72
SYNE1-219ENST00000469439 SLC34A2O95436 690 aa10.52□□□□□ -0.73
SYNE1-219ENST00000469439 VARS2Q5ST30 1063 aaKnown RBP10.52□□□□□ -0.73
SYNE1-219ENST00000469439 MMRN1Q13201 1228 aa10.51□□□□□ -0.73
SYNE1-219ENST00000469439 KHSRPQ92945 711 aaKnown RBP eCLIP10.51□□□□□ -0.73
SYNE1-219ENST00000469439 FOXK1P85037 733 aa10.48□□□□□ -0.73
SYNE1-219ENST00000469439 GPHNQ9NQX3 736 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-219ENST00000469439 GTPBP6O43824 516 aaPredicted RBP10.47□□□□□ -0.73
SYNE1-219ENST00000469439 PCDHGA4Q9Y5G9 962 aa10.47□□□□□ -0.73
SYNE1-219ENST00000469439 SHROOM4Q9ULL8 1493 aa10.47□□□□□ -0.73
SYNE1-219ENST00000469439 ZNF316A6NFI3 1004 aaPredicted RBP10.46□□□□□ -0.73
SYNE1-219ENST00000469439 SCRIBQ14160 1630 aa10.45□□□□□ -0.74
SYNE1-219ENST00000469439 NUDT7P0C024 238 aa10.45□□□□□ -0.74
SYNE1-219ENST00000469439 ZNF687Q8N1G0 1237 aa10.45□□□□□ -0.74
SYNE1-219ENST00000469439 DSG2Q14126 1118 aa10.44□□□□□ -0.74
SYNE1-219ENST00000469439 PLPP6Q8IY26 295 aa10.44□□□□□ -0.74
SYNE1-219ENST00000469439 CRISPLD2Q9H0B8 497 aa10.43□□□□□ -0.74
SYNE1-219ENST00000469439 PTCD2Q8WV60 388 aaKnown RBP10.42□□□□□ -0.74
SYNE1-219ENST00000469439 AMER1Q5JTC6 1135 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-219ENST00000469439 LHX6Q9UPM6 363 aa10.39□□□□□ -0.75
SYNE1-219ENST00000469439 NCKAP5LQ9HCH0 1330 aa10.38□□□□□ -0.75
SYNE1-219ENST00000469439 KDM4FA0A1W2PPD8 638 aa10.38□□□□□ -0.75
SYNE1-219ENST00000469439 PPP1R15BQ5SWA1 713 aa10.35□□□□□ -0.75
SYNE1-219ENST00000469439 PDE4AP27815 886 aa10.33□□□□□ -0.76
SYNE1-219ENST00000469439 RTN4Q9NQC3 1192 aaKnown RBP10.33□□□□□ -0.76
SYNE1-219ENST00000469439 OXER1Q8TDS5 423 aa10.32□□□□□ -0.76
SYNE1-219ENST00000469439 TBC1D12O60347 775 aa10.31□□□□□ -0.76
SYNE1-219ENST00000469439 POTEEQ6S8J3 1075 aa10.31□□□□□ -0.76
SYNE1-219ENST00000469439 PSDA5PKW4 1024 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-219ENST00000469439 PBX2P40425 430 aa10.3□□□□□ -0.76
SYNE1-219ENST00000469439 MFSD10Q14728 455 aa10.29□□□□□ -0.76
SYNE1-219ENST00000469439 BBXQ8WY36 941 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-219ENST00000469439 DDX27Q96GQ7 796 aaKnown RBP10.29□□□□□ -0.76
SYNE1-219ENST00000469439 LSM11P83369 360 aaKnown RBP eCLIP10.28□□□□□ -0.76
SYNE1-219ENST00000469439 CADPS2Q86UW7 1296 aa10.28□□□□□ -0.76
SYNE1-219ENST00000469439 UPF1Q92900 1129 aaKnown RBP eCLIP10.28□□□□□ -0.76
SYNE1-219ENST00000469439 LARP6Q9BRS8 491 aaKnown RBP10.28□□□□□ -0.76
SYNE1-219ENST00000469439 BICRAQ9NZM4 1560 aa10.26□□□□□ -0.77
SYNE1-219ENST00000469439 UNC13AQ9UPW8 1703 aa10.25□□□□□ -0.77
SYNE1-219ENST00000469439 PTGER2P43116 358 aa10.25□□□□□ -0.77
SYNE1-219ENST00000469439 ANKRD13DQ6ZTN6 518 aa10.25□□□□□ -0.77
SYNE1-219ENST00000469439 AXIN2Q9Y2T1 843 aa10.25□□□□□ -0.77
SYNE1-219ENST00000469439 PPP4R3BQ5MIZ7 849 aa10.23□□□□□ -0.77
SYNE1-219ENST00000469439 RNF166Q96A37 237 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-219ENST00000469439 MYT1LQ9UL68 1186 aa10.23□□□□□ -0.77
SYNE1-219ENST00000469439 ARHGAP33O14559 1287 aa10.21□□□□□ -0.77
SYNE1-219ENST00000469439 BAZ1AQ9NRL2 1556 aaPredicted RBP10.21□□□□□ -0.78
SYNE1-219ENST00000469439 EMILIN3Q9NT22 766 aa10.19□□□□□ -0.78
SYNE1-219ENST00000469439 ANO8Q9HCE9 1232 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-219ENST00000469439 EVI5O60447 810 aa10.16□□□□□ -0.78
SYNE1-219ENST00000469439 PSEN2P49810 448 aa10.16□□□□□ -0.78
SYNE1-219ENST00000469439 DMRTA1Q5VZB9 504 aa10.16□□□□□ -0.78
SYNE1-219ENST00000469439 ADGRD1Q6QNK2 874 aa10.16□□□□□ -0.78
SYNE1-219ENST00000469439 ZNF454Q8N9F8 522 aa10.16□□□□□ -0.78
SYNE1-219ENST00000469439 SPRYD3Q8NCJ5 442 aa10.16□□□□□ -0.78
SYNE1-219ENST00000469439 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-219ENST00000469439 FOSBP53539 338 aa10.15□□□□□ -0.78
SYNE1-219ENST00000469439 CAMK2BQ13554 666 aa10.14□□□□□ -0.79
SYNE1-219ENST00000469439 JPH4Q96JJ6 628 aa10.14□□□□□ -0.79
SYNE1-219ENST00000469439 TK2O00142 265 aa10.13□□□□□ -0.79
SYNE1-219ENST00000469439 MAP3K9P80192 1104 aa10.13□□□□□ -0.79
SYNE1-219ENST00000469439 BCL2L12Q9HB09 334 aa10.13□□□□□ -0.79
SYNE1-219ENST00000469439 KCNK17Q96T54 332 aa10.12□□□□□ -0.79
SYNE1-219ENST00000469439 SUPT5HO00267 1087 aaKnown RBP10.1□□□□□ -0.79
SYNE1-219ENST00000469439 HRO43593 1189 aa10.1□□□□□ -0.79
SYNE1-219ENST00000469439 KCNH8Q96L42 1107 aa10.1□□□□□ -0.79
SYNE1-219ENST00000469439 RSF1Q96T23 1441 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-219ENST00000469439 PAXIP1Q6ZW49 1069 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-219ENST00000469439 CECR2Q9BXF3 1484 aa10.08□□□□□ -0.8
SYNE1-219ENST00000469439 SMARCA2P51531 1590 aa10.08□□□□□ -0.8
SYNE1-219ENST00000469439 ZDHHC16Q969W1 377 aa10.07□□□□□ -0.8
SYNE1-219ENST00000469439 CFAP44Q96MT7 982 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms