RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 SCAPERQ9BY12 1400 aa27.02■■□□□ 1.92
CCDC28B-204ENST00000469003 CCDC18Q5T9S5 1454 aa27.01■■□□□ 1.91
CCDC28B-204ENST00000469003 MAGI2Q86UL8 1455 aa27.01■■□□□ 1.91
CCDC28B-204ENST00000469003 ARID4BQ4LE39 1312 aaPredicted RBP27.01■■□□□ 1.91
CCDC28B-204ENST00000469003 EFCAB2Q5VUJ9 269 aa27.01■■□□□ 1.91
CCDC28B-204ENST00000469003 ZFYVE16Q7Z3T8 1539 aa27■■□□□ 1.91
CCDC28B-204ENST00000469003 POGZQ7Z3K3 1410 aa27■■□□□ 1.91
CCDC28B-204ENST00000469003 PTPRMP28827 1452 aa27■■□□□ 1.91
CCDC28B-204ENST00000469003 YEATS2Q9ULM3 1422 aa26.97■■□□□ 1.91
CCDC28B-204ENST00000469003 MADDQ8WXG6 1647 aa26.97■■□□□ 1.91
CCDC28B-204ENST00000469003 FYCO1Q9BQS8 1478 aa26.95■■□□□ 1.91
CCDC28B-204ENST00000469003 ARHGAP5Q13017 1502 aa26.95■■□□□ 1.9
CCDC28B-204ENST00000469003 SIGLEC1Q9BZZ2 1709 aa26.9■■□□□ 1.9
CCDC28B-204ENST00000469003 CDC42BPBQ9Y5S2 1711 aa26.9■■□□□ 1.9
CCDC28B-204ENST00000469003 RIMS1Q86UR5 1692 aaKnown RBP26.88■■□□□ 1.89
CCDC28B-204ENST00000469003 ZNF518AQ6AHZ1 1483 aa26.87■■□□□ 1.89
CCDC28B-204ENST00000469003 PREX2Q70Z35 1606 aa26.87■■□□□ 1.89
CCDC28B-204ENST00000469003 ATP10AO60312 1499 aa26.85■■□□□ 1.89
CCDC28B-204ENST00000469003 KDM5CP41229 1560 aa26.84■■□□□ 1.89
CCDC28B-204ENST00000469003 C9orf84Q5VXU9 1444 aa26.82■■□□□ 1.88
CCDC28B-204ENST00000469003 CDC42BPAQ5VT25 1732 aa26.81■■□□□ 1.88
CCDC28B-204ENST00000469003 AFAP1Q8N556 730 aa26.8■■□□□ 1.88
CCDC28B-204ENST00000469003 ABCC1P33527 1531 aa26.8■■□□□ 1.88
CCDC28B-204ENST00000469003 FER1L4A9Z1Z3 1794 aa26.76■■□□□ 1.88
CCDC28B-204ENST00000469003 ITSN2Q9NZM3 1697 aa26.76■■□□□ 1.87
CCDC28B-204ENST00000469003 LMTK3Q96Q04 1460 aa26.75■■□□□ 1.87
CCDC28B-204ENST00000469003 MLECQ14165 292 aa26.75■■□□□ 1.87
CCDC28B-204ENST00000469003 ARHGEF12Q9NZN5 1544 aa26.75■■□□□ 1.87
CCDC28B-204ENST00000469003 MLH3Q9UHC1 1453 aa26.74■■□□□ 1.87
CCDC28B-204ENST00000469003 DIP2CQ9Y2E4 1556 aa26.73■■□□□ 1.87
CCDC28B-204ENST00000469003 TRAPPC8Q9Y2L5 1435 aa26.73■■□□□ 1.87
CCDC28B-204ENST00000469003 MYT1LQ9UL68 1186 aa26.72■■□□□ 1.87
CCDC28B-204ENST00000469003 REREQ9P2R6 1566 aa26.71■■□□□ 1.87
CCDC28B-204ENST00000469003 GPATCH8Q9UKJ3 1502 aaKnown RBP26.7■■□□□ 1.86
CCDC28B-204ENST00000469003 ABCA6Q8N139 1617 aa26.69■■□□□ 1.86
CCDC28B-204ENST00000469003 CEP162Q5TB80 1403 aa26.69■■□□□ 1.86
CCDC28B-204ENST00000469003 SAMD9LQ8IVG5 1584 aa26.67■■□□□ 1.86
CCDC28B-204ENST00000469003 PLPPR3Q6T4P5 718 aa26.66■■□□□ 1.86
CCDC28B-204ENST00000469003 MTUS2Q5JR59 1369 aa26.66■■□□□ 1.86
CCDC28B-204ENST00000469003 KIDINS220Q9ULH0 1771 aa26.64■■□□□ 1.86
CCDC28B-204ENST00000469003 ZNF777Q9ULD5 760 aaPredicted RBP26.64■■□□□ 1.86
CCDC28B-204ENST00000469003 HSPA2P54652 639 aa26.63■■□□□ 1.85
CCDC28B-204ENST00000469003 CCNB3Q8WWL7 1395 aa26.62■■□□□ 1.85
CCDC28B-204ENST00000469003 SYCP2Q9BX26 1530 aa26.62■■□□□ 1.85
CCDC28B-204ENST00000469003 AGLP35573 1532 aa26.61■■□□□ 1.85
CCDC28B-204ENST00000469003 EHBP1L1Q8N3D4 1523 aa26.6■■□□□ 1.85
CCDC28B-204ENST00000469003 CFDP1Q9UEE9 299 aaPredicted RBP26.59■■□□□ 1.85
CCDC28B-204ENST00000469003 PLEKHH2Q8IVE3 1493 aa26.59■■□□□ 1.85
CCDC28B-204ENST00000469003 KIAA1107Q9UPP5 1409 aa26.58■■□□□ 1.85
CCDC28B-204ENST00000469003 HNRNPMP52272 730 aaKnown RBP eCLIP26.56■■□□□ 1.84
CCDC28B-204ENST00000469003 TIAM1Q13009 1591 aa26.54■■□□□ 1.84
CCDC28B-204ENST00000469003 SPAG9O60271 1321 aaKnown RBP26.53■■□□□ 1.84
CCDC28B-204ENST00000469003 CEBPAP49715 358 aaPredicted RBP26.52■■□□□ 1.84
CCDC28B-204ENST00000469003 CERKQ8TCT0 537 aa26.52■■□□□ 1.84
CCDC28B-204ENST00000469003 PREX1Q8TCU6 1659 aa26.52■■□□□ 1.84
CCDC28B-204ENST00000469003 ATP7AQ04656 1500 aa26.5■■□□□ 1.83
CCDC28B-204ENST00000469003 INO80Q9ULG1 1556 aaPredicted RBP26.5■■□□□ 1.83
CCDC28B-204ENST00000469003 C3P01024 1663 aa26.47■■□□□ 1.83
CCDC28B-204ENST00000469003 LOC105371045A0A1W2PR82 267 aa26.46■■□□□ 1.83
CCDC28B-204ENST00000469003 ESF1Q9H501 851 aaKnown RBP26.46■■□□□ 1.83
CCDC28B-204ENST00000469003 SETD1BQ9UPS6 1966 aaKnown RBP26.45■■□□□ 1.82
CCDC28B-204ENST00000469003 SUPT6HQ7KZ85 1726 aaKnown RBP26.45■■□□□ 1.82
CCDC28B-204ENST00000469003 CNTLNQ9NXG0 1405 aa26.44■■□□□ 1.82
CCDC28B-204ENST00000469003 ZNF644Q9H582 1327 aaPredicted RBP26.43■■□□□ 1.82
CCDC28B-204ENST00000469003 VPS8Q8N3P4 1428 aa26.42■■□□□ 1.82
CCDC28B-204ENST00000469003 NCOA2Q15596 1464 aa26.42■■□□□ 1.82
CCDC28B-204ENST00000469003 MBD5Q9P267 1494 aa26.42■■□□□ 1.82
CCDC28B-204ENST00000469003 PLXNC1O60486 1568 aa26.41■■□□□ 1.82
CCDC28B-204ENST00000469003 UHRF1BP1Q6BDS2 1440 aa26.41■■□□□ 1.82
CCDC28B-204ENST00000469003 A2MP01023 1474 aa26.41■■□□□ 1.82
CCDC28B-204ENST00000469003 ADGBQ8N7X0 1667 aa26.38■■□□□ 1.81
CCDC28B-204ENST00000469003 MROH2AA6NES4 1674 aa26.38■■□□□ 1.81
CCDC28B-204ENST00000469003 RTEL1-TNFRSF6BF6WH68 1400 aa26.35■■□□□ 1.81
CCDC28B-204ENST00000469003 CAMSAP2Q08AD1 1489 aa26.33■■□□□ 1.81
CCDC28B-204ENST00000469003 DISP3Q9P2K9 1392 aa26.33■■□□□ 1.8
CCDC28B-204ENST00000469003 LRRC9Q6ZRR7 1453 aa26.32■■□□□ 1.8
CCDC28B-204ENST00000469003 CCDC141Q6ZP82 1450 aa26.3■■□□□ 1.8
CCDC28B-204ENST00000469003 ZMYM3Q14202 1370 aa26.3■■□□□ 1.8
CCDC28B-204ENST00000469003 STRCQ7RTU9 1775 aa26.3■■□□□ 1.8
CCDC28B-204ENST00000469003 MAP3K1Q13233 1512 aa26.29■■□□□ 1.8
CCDC28B-204ENST00000469003 CLTCQ00610 1675 aaKnown RBP26.29■■□□□ 1.8
CCDC28B-204ENST00000469003 NPATQ14207 1427 aa26.29■■□□□ 1.8
CCDC28B-204ENST00000469003 RSPH4AQ5TD94 716 aa26.28■■□□□ 1.8
CCDC28B-204ENST00000469003 DMRT2Q9Y5R5 561 aa26.27■■□□□ 1.8
CCDC28B-204ENST00000469003 GGT6Q6P531 493 aa26.26■■□□□ 1.79
CCDC28B-204ENST00000469003 DHX29Q7Z478 1369 aaKnown RBP26.25■■□□□ 1.79
CCDC28B-204ENST00000469003 PPP6R1Q9UPN7 881 aa26.25■■□□□ 1.79
CCDC28B-204ENST00000469003 ARHGEF5Q12774 1597 aa26.24■■□□□ 1.79
CCDC28B-204ENST00000469003 ILDR2Q71H61 639 aa26.24■■□□□ 1.79
CCDC28B-204ENST00000469003 SOCS7O14512 581 aa26.2■■□□□ 1.78
CCDC28B-204ENST00000469003 KANK4Q5T7N3 995 aaPredicted RBP26.2■■□□□ 1.78
CCDC28B-204ENST00000469003 PTPRTO14522 1441 aa26.17■■□□□ 1.78
CCDC28B-204ENST00000469003 PTPRKQ15262 1439 aa26.17■■□□□ 1.78
CCDC28B-204ENST00000469003 TSPY4P0CV99 314 aa26.16■■□□□ 1.78
CCDC28B-204ENST00000469003 TSPY10P0CW01 314 aa26.16■■□□□ 1.78
CCDC28B-204ENST00000469003 NCOA1Q15788 1441 aa26.15■■□□□ 1.78
CCDC28B-204ENST00000469003 MYOM3Q5VTT5 1437 aa26.14■■□□□ 1.78
CCDC28B-204ENST00000469003 MIA2Q96PC5 1412 aa26.14■■□□□ 1.78
CCDC28B-204ENST00000469003 MYO3AQ8NEV4 1616 aa26.14■■□□□ 1.78
CCDC28B-204ENST00000469003 KIF3BO15066 747 aa26.14■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 119.5 ms