RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 TMEM92Q6UXU6 159 aa14.21□□□□□ -0.13
SYNE1-218ENST00000468937 C2orf72A6NCS6 295 aa14.16□□□□□ -0.14
SYNE1-218ENST00000468937 KIF3CO14782 793 aa14.15□□□□□ -0.14
SYNE1-218ENST00000468937 GPHNQ9NQX3 736 aaPredicted RBP14.14□□□□□ -0.15
SYNE1-218ENST00000468937 PDE4AP27815 886 aa14.13□□□□□ -0.15
SYNE1-218ENST00000468937 DOK7Q18PE1 504 aa14.1□□□□□ -0.15
SYNE1-218ENST00000468937 FAM163AQ96GL9 167 aaPredicted RBP14.09□□□□□ -0.15
SYNE1-218ENST00000468937 CRISPLD2Q9H0B8 497 aa14.09□□□□□ -0.15
SYNE1-218ENST00000468937 PLCB2Q00722 1185 aa14.08□□□□□ -0.16
SYNE1-218ENST00000468937 RIMBP2O15034 1052 aa14.07□□□□□ -0.16
SYNE1-218ENST00000468937 FOXK1P85037 733 aa14.07□□□□□ -0.16
SYNE1-218ENST00000468937 ZNF710Q8N1W2 664 aa14.05□□□□□ -0.16
SYNE1-218ENST00000468937 CADPS2Q86UW7 1296 aa14.04□□□□□ -0.16
SYNE1-218ENST00000468937 NCKAP5LQ9HCH0 1330 aa14.04□□□□□ -0.16
SYNE1-218ENST00000468937 HOXB3P14651 431 aaPredicted RBP14.03□□□□□ -0.16
SYNE1-218ENST00000468937 LARP6Q9BRS8 491 aaKnown RBP14.03□□□□□ -0.16
SYNE1-218ENST00000468937 DSG2Q14126 1118 aa14.01□□□□□ -0.17
SYNE1-218ENST00000468937 PLPP6Q8IY26 295 aa14.01□□□□□ -0.17
SYNE1-218ENST00000468937 ST18O60284 1047 aa14□□□□□ -0.17
SYNE1-218ENST00000468937 DDX27Q96GQ7 796 aaKnown RBP14□□□□□ -0.17
SYNE1-218ENST00000468937 ZSWIM6Q9HCJ5 1215 aa14□□□□□ -0.17
SYNE1-218ENST00000468937 PPP1R15BQ5SWA1 713 aa13.99□□□□□ -0.17
SYNE1-218ENST00000468937 SLC34A2O95436 690 aa13.97□□□□□ -0.17
SYNE1-218ENST00000468937 MFSD10Q14728 455 aa13.97□□□□□ -0.17
SYNE1-218ENST00000468937 TSHZ2Q9NRE2 1034 aa13.95□□□□□ -0.18
SYNE1-218ENST00000468937 LCE2DQ5TA82 110 aaPredicted RBP13.92□□□□□ -0.18
SYNE1-218ENST00000468937 WDR70Q9NW82 654 aa13.92□□□□□ -0.18
SYNE1-218ENST00000468937 HOXB1P14653 301 aaPredicted RBP13.91□□□□□ -0.18
SYNE1-218ENST00000468937 TBC1D12O60347 775 aa13.89□□□□□ -0.19
SYNE1-218ENST00000468937 GPR153Q6NV75 609 aa13.88□□□□□ -0.19
SYNE1-218ENST00000468937 PTCD2Q8WV60 388 aaKnown RBP13.88□□□□□ -0.19
SYNE1-218ENST00000468937 HAP1P54257 671 aaPredicted RBP13.87□□□□□ -0.19
SYNE1-218ENST00000468937 ARSIQ5FYB1 569 aa13.86□□□□□ -0.19
SYNE1-218ENST00000468937 PCDHGA4Q9Y5G9 962 aa13.86□□□□□ -0.19
SYNE1-218ENST00000468937 EMP3P54852 163 aa13.84□□□□□ -0.19
SYNE1-218ENST00000468937 POTEMA6NI47 508 aa13.83□□□□□ -0.2
SYNE1-218ENST00000468937 POTEGQ6S5H5 508 aa13.83□□□□□ -0.2
SYNE1-218ENST00000468937 MARVELD3Q96A59 401 aa13.83□□□□□ -0.2
SYNE1-218ENST00000468937 OXER1Q8TDS5 423 aa13.82□□□□□ -0.2
SYNE1-218ENST00000468937 CAMK2BQ13554 666 aa13.8□□□□□ -0.2
SYNE1-218ENST00000468937 UPF1Q92900 1129 aaKnown RBP eCLIP13.8□□□□□ -0.2
SYNE1-218ENST00000468937 E2F4Q16254 413 aa13.78□□□□□ -0.2
SYNE1-218ENST00000468937 MAP3K9P80192 1104 aa13.77□□□□□ -0.21
SYNE1-218ENST00000468937 ERBB3P21860 1342 aa13.76□□□□□ -0.21
SYNE1-218ENST00000468937 NUDT7P0C024 238 aa13.76□□□□□ -0.21
SYNE1-218ENST00000468937 KHSRPQ92945 711 aaKnown RBP eCLIP13.76□□□□□ -0.21
SYNE1-218ENST00000468937 ZNF316A6NFI3 1004 aaPredicted RBP13.75□□□□□ -0.21
SYNE1-218ENST00000468937 EMILIN3Q9NT22 766 aa13.75□□□□□ -0.21
SYNE1-218ENST00000468937 FAM205CA6NFA0 338 aa13.74□□□□□ -0.21
SYNE1-218ENST00000468937 PSDA5PKW4 1024 aaPredicted RBP13.69□□□□□ -0.22
SYNE1-218ENST00000468937 HS3ST6Q96QI5 342 aa13.69□□□□□ -0.22
SYNE1-218ENST00000468937 KDM4FA0A1W2PPD8 638 aa13.68□□□□□ -0.22
SYNE1-218ENST00000468937 VSIG10Q8N0Z9 540 aa13.68□□□□□ -0.22
SYNE1-218ENST00000468937 PCDH10Q9P2E7 1040 aa13.68□□□□□ -0.22
SYNE1-218ENST00000468937 EVI5O60447 810 aa13.67□□□□□ -0.22
SYNE1-218ENST00000468937 VARS2Q5ST30 1063 aaKnown RBP13.67□□□□□ -0.22
SYNE1-218ENST00000468937 LHX6Q9UPM6 363 aa13.67□□□□□ -0.22
SYNE1-218ENST00000468937 DPYSL4O14531 572 aa13.66□□□□□ -0.22
SYNE1-218ENST00000468937 P3H3Q8IVL6 736 aa13.65□□□□□ -0.22
SYNE1-218ENST00000468937 ARIH1Q9Y4X5 557 aaPredicted RBP13.65□□□□□ -0.22
SYNE1-218ENST00000468937 ANO8Q9HCE9 1232 aaPredicted RBP13.64□□□□□ -0.23
SYNE1-218ENST00000468937 CDAN1Q8IWY9 1227 aa13.62□□□□□ -0.23
SYNE1-218ENST00000468937 SPDYE16A6NNV3 312 aaPredicted RBP13.61□□□□□ -0.23
SYNE1-218ENST00000468937 POTEB3A0JP26 581 aa13.59□□□□□ -0.23
SYNE1-218ENST00000468937 POTEBQ6S5H4 581 aa13.59□□□□□ -0.23
SYNE1-218ENST00000468937 ZNF687Q8N1G0 1237 aa13.59□□□□□ -0.23
SYNE1-218ENST00000468937 ARHGEF1Q92888 912 aaKnown RBP13.59□□□□□ -0.23
SYNE1-218ENST00000468937 PPP4R3BQ5MIZ7 849 aa13.58□□□□□ -0.24
SYNE1-218ENST00000468937 KDM2AQ9Y2K7 1162 aa13.58□□□□□ -0.24
SYNE1-218ENST00000468937 PDIA6Q15084 440 aa13.57□□□□□ -0.24
SYNE1-218ENST00000468937 KCNV2Q8TDN2 545 aa13.57□□□□□ -0.24
SYNE1-218ENST00000468937 ZNF454Q8N9F8 522 aa13.54□□□□□ -0.24
SYNE1-218ENST00000468937 JPH4Q96JJ6 628 aa13.54□□□□□ -0.24
SYNE1-218ENST00000468937 PTGER2P43116 358 aa13.52□□□□□ -0.25
SYNE1-218ENST00000468937 FOSBP53539 338 aa13.52□□□□□ -0.25
SYNE1-218ENST00000468937 PBX2P40425 430 aa13.51□□□□□ -0.25
SYNE1-218ENST00000468937 PHF14O94880 888 aa13.49□□□□□ -0.25
SYNE1-218ENST00000468937 ZDHHC16Q969W1 377 aa13.48□□□□□ -0.25
SYNE1-218ENST00000468937 KCNH8Q96L42 1107 aa13.48□□□□□ -0.25
SYNE1-218ENST00000468937 EPAS1Q99814 870 aa13.47□□□□□ -0.25
SYNE1-218ENST00000468937 FBXW7Q969H0 707 aa13.46□□□□□ -0.25
SYNE1-218ENST00000468937 PCDHGA10Q9Y5H3 936 aa13.46□□□□□ -0.25
SYNE1-218ENST00000468937 TYW1BQ6NUM6 668 aa13.45□□□□□ -0.26
SYNE1-218ENST00000468937 DDX12PQ92771 950 aa13.45□□□□□ -0.26
SYNE1-218ENST00000468937 ARHGAP33O14559 1287 aa13.44□□□□□ -0.26
SYNE1-218ENST00000468937 KRTAP3-3Q9BYR6 98 aa13.43□□□□□ -0.26
SYNE1-218ENST00000468937 KRTAP3-2Q9BYR7 98 aa13.43□□□□□ -0.26
SYNE1-218ENST00000468937 BCL2L12Q9HB09 334 aa13.43□□□□□ -0.26
SYNE1-218ENST00000468937 GRXCR2A6NFK2 248 aa13.4□□□□□ -0.26
SYNE1-218ENST00000468937 PTPREP23469 700 aa13.4□□□□□ -0.26
SYNE1-218ENST00000468937 NBR1Q14596 966 aa13.39□□□□□ -0.27
SYNE1-218ENST00000468937 ADAM33Q9BZ11 813 aa13.39□□□□□ -0.27
SYNE1-218ENST00000468937 AXIN2Q9Y2T1 843 aa13.39□□□□□ -0.27
SYNE1-218ENST00000468937 KCNK17Q96T54 332 aa13.38□□□□□ -0.27
SYNE1-218ENST00000468937 LSM11P83369 360 aaKnown RBP eCLIP13.37□□□□□ -0.27
SYNE1-218ENST00000468937 POTEEQ6S8J3 1075 aa13.37□□□□□ -0.27
SYNE1-218ENST00000468937 SLC24A1O60721 1099 aa13.34□□□□□ -0.27
SYNE1-218ENST00000468937 PSEN2P49810 448 aa13.34□□□□□ -0.27
SYNE1-218ENST00000468937 ANKRD13DQ6ZTN6 518 aa13.34□□□□□ -0.27
SYNE1-218ENST00000468937 EN1Q05925 392 aaPredicted RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms