RNA–Protein interactions for RNA: ENST00000468164.1

C9orf3-212, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-212ENST00000468164 MADDQ8WXG6 1647 aa21.79■■□□□ 1.08
C9orf3-212ENST00000468164 CCDC18Q5T9S5 1454 aa21.78■■□□□ 1.08
C9orf3-212ENST00000468164 ZFYVE16Q7Z3T8 1539 aa21.78■■□□□ 1.08
C9orf3-212ENST00000468164 SCAPERQ9BY12 1400 aa21.78■■□□□ 1.08
C9orf3-212ENST00000468164 ZMYM4Q5VZL5 1548 aa21.77■■□□□ 1.08
C9orf3-212ENST00000468164 RIMS1Q86UR5 1692 aaKnown RBP21.76■■□□□ 1.07
C9orf3-212ENST00000468164 SIGLEC1Q9BZZ2 1709 aa21.75■■□□□ 1.07
C9orf3-212ENST00000468164 EFCAB2Q5VUJ9 269 aa21.75■■□□□ 1.07
C9orf3-212ENST00000468164 FYCO1Q9BQS8 1478 aa21.75■■□□□ 1.07
C9orf3-212ENST00000468164 CDC42BPAQ5VT25 1732 aa21.74■■□□□ 1.07
C9orf3-212ENST00000468164 PREX2Q70Z35 1606 aa21.73■■□□□ 1.07
C9orf3-212ENST00000468164 POGZQ7Z3K3 1410 aa21.73■■□□□ 1.07
C9orf3-212ENST00000468164 YEATS2Q9ULM3 1422 aa21.73■■□□□ 1.07
C9orf3-212ENST00000468164 PTPRMP28827 1452 aa21.71■■□□□ 1.07
C9orf3-212ENST00000468164 FER1L4A9Z1Z3 1794 aa21.69■■□□□ 1.06
C9orf3-212ENST00000468164 MYT1LQ9UL68 1186 aa21.68■■□□□ 1.06
C9orf3-212ENST00000468164 MAGI2Q86UL8 1455 aa21.68■■□□□ 1.06
C9orf3-212ENST00000468164 PLPPR3Q6T4P5 718 aa21.67■■□□□ 1.06
C9orf3-212ENST00000468164 ITSN2Q9NZM3 1697 aa21.66■■□□□ 1.06
C9orf3-212ENST00000468164 MLECQ14165 292 aa21.66■■□□□ 1.06
C9orf3-212ENST00000468164 ZNF518AQ6AHZ1 1483 aa21.64■■□□□ 1.06
C9orf3-212ENST00000468164 AFAP1Q8N556 730 aa21.62■■□□□ 1.05
C9orf3-212ENST00000468164 ABCC1P33527 1531 aa21.61■■□□□ 1.05
C9orf3-212ENST00000468164 KDM5CP41229 1560 aa21.61■■□□□ 1.05
C9orf3-212ENST00000468164 ATP10AO60312 1499 aa21.6■■□□□ 1.05
C9orf3-212ENST00000468164 CEP162Q5TB80 1403 aa21.6■■□□□ 1.05
C9orf3-212ENST00000468164 C9orf84Q5VXU9 1444 aa21.59■■□□□ 1.05
C9orf3-212ENST00000468164 ZNF777Q9ULD5 760 aaPredicted RBP21.59■■□□□ 1.05
C9orf3-212ENST00000468164 ABCA6Q8N139 1617 aa21.58■■□□□ 1.04
C9orf3-212ENST00000468164 DIP2CQ9Y2E4 1556 aa21.57■■□□□ 1.04
C9orf3-212ENST00000468164 SAMD9LQ8IVG5 1584 aa21.56■■□□□ 1.04
C9orf3-212ENST00000468164 ARHGEF12Q9NZN5 1544 aa21.55■■□□□ 1.04
C9orf3-212ENST00000468164 MTUS2Q5JR59 1369 aa21.55■■□□□ 1.04
C9orf3-212ENST00000468164 TRAPPC8Q9Y2L5 1435 aa21.55■■□□□ 1.04
C9orf3-212ENST00000468164 KIDINS220Q9ULH0 1771 aa21.53■■□□□ 1.04
C9orf3-212ENST00000468164 SYCP2Q9BX26 1530 aa21.52■■□□□ 1.04
C9orf3-212ENST00000468164 GPATCH8Q9UKJ3 1502 aaKnown RBP21.52■■□□□ 1.04
C9orf3-212ENST00000468164 LOC105371045A0A1W2PR82 267 aa21.5■■□□□ 1.03
C9orf3-212ENST00000468164 CCNB3Q8WWL7 1395 aa21.49■■□□□ 1.03
C9orf3-212ENST00000468164 MLH3Q9UHC1 1453 aa21.49■■□□□ 1.03
C9orf3-212ENST00000468164 EHBP1L1Q8N3D4 1523 aa21.49■■□□□ 1.03
C9orf3-212ENST00000468164 LMTK3Q96Q04 1460 aa21.47■■□□□ 1.03
C9orf3-212ENST00000468164 CFDP1Q9UEE9 299 aaPredicted RBP21.47■■□□□ 1.03
C9orf3-212ENST00000468164 SUPT6HQ7KZ85 1726 aaKnown RBP21.46■■□□□ 1.03
C9orf3-212ENST00000468164 TIAM1Q13009 1591 aa21.46■■□□□ 1.03
C9orf3-212ENST00000468164 REREQ9P2R6 1566 aa21.46■■□□□ 1.03
C9orf3-212ENST00000468164 HNRNPMP52272 730 aaKnown RBP eCLIP21.45■■□□□ 1.021e-6■■■■□ 19.5
C9orf3-212ENST00000468164 PREX1Q8TCU6 1659 aa21.43■■□□□ 1.02
C9orf3-212ENST00000468164 C3P01024 1663 aa21.41■■□□□ 1.02
C9orf3-212ENST00000468164 CEBPAP49715 358 aaPredicted RBP21.41■■□□□ 1.02
C9orf3-212ENST00000468164 HSPA2P54652 639 aa21.41■■□□□ 1.02
C9orf3-212ENST00000468164 PLEKHH2Q8IVE3 1493 aa21.4■■□□□ 1.02
C9orf3-212ENST00000468164 SPAG9O60271 1321 aaKnown RBP21.4■■□□□ 1.02
C9orf3-212ENST00000468164 ATP7AQ04656 1500 aa21.39■■□□□ 1.02
C9orf3-212ENST00000468164 ILDR1Q86SU0 546 aaPredicted RBP21.39■■□□□ 1.01
C9orf3-212ENST00000468164 ESF1Q9H501 851 aaKnown RBP21.39■■□□□ 1.01
C9orf3-212ENST00000468164 INO80Q9ULG1 1556 aaPredicted RBP21.39■■□□□ 1.01
C9orf3-212ENST00000468164 AGLP35573 1532 aa21.37■■□□□ 1.01
C9orf3-212ENST00000468164 ZNF644Q9H582 1327 aaPredicted RBP21.36■■□□□ 1.01
C9orf3-212ENST00000468164 SETD1BQ9UPS6 1966 aaKnown RBP21.36■■□□□ 1.01
C9orf3-212ENST00000468164 VPS8Q8N3P4 1428 aa21.35■■□□□ 1.01
C9orf3-212ENST00000468164 KIAA1107Q9UPP5 1409 aa21.35■■□□□ 1.01
C9orf3-212ENST00000468164 ADGBQ8N7X0 1667 aa21.34■■□□□ 1.01
C9orf3-212ENST00000468164 NCOA2Q15596 1464 aa21.34■■□□□ 1.01
C9orf3-212ENST00000468164 CLTCQ00610 1675 aaKnown RBP21.32■■□□□ 1
C9orf3-212ENST00000468164 A2MP01023 1474 aa21.28■■□□□ 1
C9orf3-212ENST00000468164 CAMSAP2Q08AD1 1489 aa21.28■■□□□ 1
C9orf3-212ENST00000468164 MROH2AA6NES4 1674 aa21.28■■□□□ 1
C9orf3-212ENST00000468164 PLXNC1O60486 1568 aa21.27■■□□□ 1
C9orf3-212ENST00000468164 LRRC9Q6ZRR7 1453 aa21.26■□□□□ 0.99
C9orf3-212ENST00000468164 UHRF1BP1Q6BDS2 1440 aa21.26■□□□□ 0.99
C9orf3-212ENST00000468164 MBD5Q9P267 1494 aa21.26■□□□□ 0.99
C9orf3-212ENST00000468164 STRCQ7RTU9 1775 aa21.23■□□□□ 0.99
C9orf3-212ENST00000468164 CNTLNQ9NXG0 1405 aa21.23■□□□□ 0.99
C9orf3-212ENST00000468164 GGT6Q6P531 493 aa21.23■□□□□ 0.99
C9orf3-212ENST00000468164 CCDC141Q6ZP82 1450 aa21.22■□□□□ 0.99
C9orf3-212ENST00000468164 KANK4Q5T7N3 995 aaPredicted RBP21.2■□□□□ 0.98
C9orf3-212ENST00000468164 RTEL1-TNFRSF6BF6WH68 1400 aa21.17■□□□□ 0.98
C9orf3-212ENST00000468164 MAP3K1Q13233 1512 aa21.17■□□□□ 0.98
C9orf3-212ENST00000468164 ARHGEF5Q12774 1597 aa21.17■□□□□ 0.98
C9orf3-212ENST00000468164 ZMYM3Q14202 1370 aa21.16■□□□□ 0.98
C9orf3-212ENST00000468164 APLP2Q06481 763 aa21.16■□□□□ 0.98
C9orf3-212ENST00000468164 MYO3AQ8NEV4 1616 aa21.13■□□□□ 0.97
C9orf3-212ENST00000468164 DHX29Q7Z478 1369 aaKnown RBP21.12■□□□□ 0.97
C9orf3-212ENST00000468164 TSPY4P0CV99 314 aa21.12■□□□□ 0.97
C9orf3-212ENST00000468164 TSPY10P0CW01 314 aa21.12■□□□□ 0.97
C9orf3-212ENST00000468164 RSPH4AQ5TD94 716 aa21.12■□□□□ 0.97
C9orf3-212ENST00000468164 FBXO41Q8TF61 875 aa21.12■□□□□ 0.97
C9orf3-212ENST00000468164 KIF3BO15066 747 aa21.11■□□□□ 0.97
C9orf3-212ENST00000468164 MYOM3Q5VTT5 1437 aa21.11■□□□□ 0.97
C9orf3-212ENST00000468164 NPATQ14207 1427 aa21.1■□□□□ 0.97
C9orf3-212ENST00000468164 CAMSAP1Q5T5Y3 1602 aa21.08■□□□□ 0.97
C9orf3-212ENST00000468164 ZNF142P52746 1687 aaPredicted RBP21.08■□□□□ 0.96
C9orf3-212ENST00000468164 DMRT2Q9Y5R5 561 aa21.07■□□□□ 0.96
C9orf3-212ENST00000468164 CFAP65Q6ZU64 1925 aaKnown RBP21.07■□□□□ 0.96
C9orf3-212ENST00000468164 MAST1Q9Y2H9 1570 aa21.06■□□□□ 0.96
C9orf3-212ENST00000468164 CROCC2H7BZ55 1655 aa21.06■□□□□ 0.96
C9orf3-212ENST00000468164 PTPN23Q9H3S7 1636 aa21.06■□□□□ 0.96
C9orf3-212ENST00000468164 PTPRKQ15262 1439 aa21.05■□□□□ 0.96
C9orf3-212ENST00000468164 MIA2Q96PC5 1412 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms