RNA–Protein interactions for RNA: ENST00000467263.1

SMC4-207, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 401 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-207ENST00000467263 SPNS2Q8IVW8 549 aa12.94□□□□□ -0.34
SMC4-207ENST00000467263 KRTAP3-3Q9BYR6 98 aa12.94□□□□□ -0.34
SMC4-207ENST00000467263 KRTAP3-2Q9BYR7 98 aa12.94□□□□□ -0.34
SMC4-207ENST00000467263 ZNF710Q8N1W2 664 aa12.92□□□□□ -0.34
SMC4-207ENST00000467263 DOK7Q18PE1 504 aa12.91□□□□□ -0.34
SMC4-207ENST00000467263 TAOK2Q9UL54 1235 aa12.91□□□□□ -0.34
SMC4-207ENST00000467263 MMRN1Q13201 1228 aa12.88□□□□□ -0.35
SMC4-207ENST00000467263 GPR153Q6NV75 609 aa12.84□□□□□ -0.35
SMC4-207ENST00000467263 PPP1R37O75864 691 aa12.83□□□□□ -0.36
SMC4-207ENST00000467263 ERBB3P21860 1342 aa12.82□□□□□ -0.36
SMC4-207ENST00000467263 KHSRPQ92945 711 aaKnown RBP eCLIP12.81□□□□□ -0.363e-10■■□□□ 11.4
SMC4-207ENST00000467263 C2orf72A6NCS6 295 aa12.8□□□□□ -0.36
SMC4-207ENST00000467263 KIF3CO14782 793 aa12.8□□□□□ -0.36
SMC4-207ENST00000467263 RIMBP2O15034 1052 aa12.8□□□□□ -0.36
SMC4-207ENST00000467263 ARSIQ5FYB1 569 aa12.79□□□□□ -0.36
SMC4-207ENST00000467263 VARS2Q5ST30 1063 aaKnown RBP12.79□□□□□ -0.36
SMC4-207ENST00000467263 ZSWIM6Q9HCJ5 1215 aa12.76□□□□□ -0.37
SMC4-207ENST00000467263 HS6ST3Q8IZP7 471 aa12.7□□□□□ -0.38
SMC4-207ENST00000467263 CHGAP10645 457 aaKnown RBP12.66□□□□□ -0.38
SMC4-207ENST00000467263 ZNF687Q8N1G0 1237 aa12.66□□□□□ -0.38
SMC4-207ENST00000467263 NKX1-1Q15270 411 aaPredicted RBP12.65□□□□□ -0.38
SMC4-207ENST00000467263 ZNF316A6NFI3 1004 aaPredicted RBP12.64□□□□□ -0.39
SMC4-207ENST00000467263 NUDT7P0C024 238 aa12.64□□□□□ -0.39
SMC4-207ENST00000467263 TMC2Q8TDI7 906 aa12.63□□□□□ -0.39
SMC4-207ENST00000467263 PCDHGA4Q9Y5G9 962 aa12.61□□□□□ -0.39
SMC4-207ENST00000467263 SLC34A2O95436 690 aa12.57□□□□□ -0.4
SMC4-207ENST00000467263 LHX6Q9UPM6 363 aa12.57□□□□□ -0.4
SMC4-207ENST00000467263 POTEEQ6S8J3 1075 aa12.55□□□□□ -0.4
SMC4-207ENST00000467263 DSG2Q14126 1118 aa12.52□□□□□ -0.41
SMC4-207ENST00000467263 KDM4FA0A1W2PPD8 638 aa12.51□□□□□ -0.41
SMC4-207ENST00000467263 ANKRD13DQ6ZTN6 518 aa12.51□□□□□ -0.41
SMC4-207ENST00000467263 PLPP6Q8IY26 295 aa12.51□□□□□ -0.41
SMC4-207ENST00000467263 DNAJC5Q9H3Z4 198 aa12.51□□□□□ -0.41
SMC4-207ENST00000467263 AXIN2Q9Y2T1 843 aa12.51□□□□□ -0.41
SMC4-207ENST00000467263 FOXK1P85037 733 aa12.5□□□□□ -0.41
SMC4-207ENST00000467263 GPHNQ9NQX3 736 aaPredicted RBP12.5□□□□□ -0.41
SMC4-207ENST00000467263 RNF166Q96A37 237 aaPredicted RBP12.48□□□□□ -0.41
SMC4-207ENST00000467263 MYT1LQ9UL68 1186 aa12.48□□□□□ -0.41
SMC4-207ENST00000467263 LSM11P83369 360 aaKnown RBP eCLIP12.47□□□□□ -0.41
SMC4-207ENST00000467263 PTCD2Q8WV60 388 aaKnown RBP12.46□□□□□ -0.41
SMC4-207ENST00000467263 GTPBP6O43824 516 aaPredicted RBP12.4□□□□□ -0.42
SMC4-207ENST00000467263 CRISPLD2Q9H0B8 497 aa12.4□□□□□ -0.42
SMC4-207ENST00000467263 NCKAP5LQ9HCH0 1330 aa12.38□□□□□ -0.43
SMC4-207ENST00000467263 PBX2P40425 430 aa12.37□□□□□ -0.43
SMC4-207ENST00000467263 UPF1Q92900 1129 aaKnown RBP eCLIP12.36□□□□□ -0.43
SMC4-207ENST00000467263 PSEN2P49810 448 aa12.34□□□□□ -0.43
SMC4-207ENST00000467263 DMRTA1Q5VZB9 504 aa12.34□□□□□ -0.43
SMC4-207ENST00000467263 OXER1Q8TDS5 423 aa12.34□□□□□ -0.43
SMC4-207ENST00000467263 DCAF8L2P0C7V8 631 aa12.33□□□□□ -0.44
SMC4-207ENST00000467263 ARHGAP33O14559 1287 aa12.32□□□□□ -0.44
SMC4-207ENST00000467263 PPP1R15BQ5SWA1 713 aa12.32□□□□□ -0.44
SMC4-207ENST00000467263 PTGER2P43116 358 aa12.31□□□□□ -0.44
SMC4-207ENST00000467263 RYDENQ9NUL5 291 aaKnown RBP12.31□□□□□ -0.44
SMC4-207ENST00000467263 PSDA5PKW4 1024 aaPredicted RBP12.28□□□□□ -0.44
SMC4-207ENST00000467263 TBC1D12O60347 775 aa12.28□□□□□ -0.44
SMC4-207ENST00000467263 ADGRD1Q6QNK2 874 aa12.28□□□□□ -0.44
SMC4-207ENST00000467263 CADPS2Q86UW7 1296 aa12.26□□□□□ -0.45
SMC4-207ENST00000467263 PPP4R3BQ5MIZ7 849 aa12.25□□□□□ -0.45
SMC4-207ENST00000467263 LARP6Q9BRS8 491 aaKnown RBP12.25□□□□□ -0.45
SMC4-207ENST00000467263 PDE4AP27815 886 aa12.24□□□□□ -0.45
SMC4-207ENST00000467263 HRO43593 1189 aa12.22□□□□□ -0.45
SMC4-207ENST00000467263 KCNK17Q96T54 332 aa12.22□□□□□ -0.45
SMC4-207ENST00000467263 ZNF454Q8N9F8 522 aa12.2□□□□□ -0.46
SMC4-207ENST00000467263 EMILIN3Q9NT22 766 aa12.19□□□□□ -0.46
SMC4-207ENST00000467263 TK2O00142 265 aa12.18□□□□□ -0.46
SMC4-207ENST00000467263 MFSD10Q14728 455 aa12.18□□□□□ -0.46
SMC4-207ENST00000467263 DDX27Q96GQ7 796 aaKnown RBP12.18□□□□□ -0.46
SMC4-207ENST00000467263 FOSBP53539 338 aa12.17□□□□□ -0.46
SMC4-207ENST00000467263 EVI5O60447 810 aa12.16□□□□□ -0.46
SMC4-207ENST00000467263 ANO8Q9HCE9 1232 aaPredicted RBP12.16□□□□□ -0.46
SMC4-207ENST00000467263 BCL2L12Q9HB09 334 aa12.12□□□□□ -0.47
SMC4-207ENST00000467263 VPS9D1Q9Y2B5 631 aa12.12□□□□□ -0.47
SMC4-207ENST00000467263 ADAM33Q9BZ11 813 aa12.11□□□□□ -0.47
SMC4-207ENST00000467263 MAP3K9P80192 1104 aa12.09□□□□□ -0.47
SMC4-207ENST00000467263 KCTD12Q96CX2 325 aaKnown RBP12.09□□□□□ -0.47
SMC4-207ENST00000467263 JPH4Q96JJ6 628 aa12.08□□□□□ -0.48
SMC4-207ENST00000467263 HCSTQ9UBK5 93 aa12.08□□□□□ -0.48
SMC4-207ENST00000467263 ZDHHC16Q969W1 377 aa12.05□□□□□ -0.48
SMC4-207ENST00000467263 ZBED2Q9BTP6 218 aa12.05□□□□□ -0.48
SMC4-207ENST00000467263 PTPREP23469 700 aa12.04□□□□□ -0.48
SMC4-207ENST00000467263 KCNH8Q96L42 1107 aa12.04□□□□□ -0.48
SMC4-207ENST00000467263 PCDHGA10Q9Y5H3 936 aa12.04□□□□□ -0.48
SMC4-207ENST00000467263 PLA2G2EQ9NZK7 142 aa12.03□□□□□ -0.48
SMC4-207ENST00000467263 BHMG1C9JSJ3 638 aaPredicted RBP12.02□□□□□ -0.49
SMC4-207ENST00000467263 SLC4A5Q9BY07 1137 aa12.02□□□□□ -0.49
SMC4-207ENST00000467263 CAMK2BQ13554 666 aa12□□□□□ -0.49
SMC4-207ENST00000467263 BBXQ8WY36 941 aaPredicted RBP12□□□□□ -0.49
SMC4-207ENST00000467263 STAC3Q96MF2 364 aa11.99□□□□□ -0.49
SMC4-207ENST00000467263 DPYSL4O14531 572 aa11.98□□□□□ -0.49
SMC4-207ENST00000467263 COL9A1P20849 921 aa11.98□□□□□ -0.49
SMC4-207ENST00000467263 RTN4Q9NQC3 1192 aaKnown RBP11.98□□□□□ -0.49
SMC4-207ENST00000467263 PTPN5P54829 565 aa11.97□□□□□ -0.49
SMC4-207ENST00000467263 PROX2Q3B8N5 592 aa11.96□□□□□ -0.49
SMC4-207ENST00000467263 AMER1Q5JTC6 1135 aaPredicted RBP11.96□□□□□ -0.49
SMC4-207ENST00000467263 THSD4Q6ZMP0 1018 aa11.92□□□□□ -0.5
SMC4-207ENST00000467263 PPP1R3GB7ZBB8 358 aa11.91□□□□□ -0.5
SMC4-207ENST00000467263 PHF14O94880 888 aa11.91□□□□□ -0.5
SMC4-207ENST00000467263 TYW1BQ6NUM6 668 aa11.91□□□□□ -0.5
SMC4-207ENST00000467263 MRPL50Q8N5N7 158 aaKnown RBP11.91□□□□□ -0.5
SMC4-207ENST00000467263 DDX12PQ92771 950 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms