RNA–Protein interactions for RNA: ENST00000467182.1

COL4A1-202, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 3

Gene COL4A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-202ENST00000467182 CFDP1Q9UEE9 299 aaPredicted RBP19.71■□□□□ 0.75
COL4A1-202ENST00000467182 ZNF644Q9H582 1327 aaPredicted RBP19.71■□□□□ 0.75
COL4A1-202ENST00000467182 SAMD9LQ8IVG5 1584 aa19.7■□□□□ 0.74
COL4A1-202ENST00000467182 DNMT1P26358 1616 aaKnown RBP19.7■□□□□ 0.74
COL4A1-202ENST00000467182 PLCH2O75038 1416 aa19.69■□□□□ 0.74
COL4A1-202ENST00000467182 ARAP3Q8WWN8 1544 aa19.69■□□□□ 0.74
COL4A1-202ENST00000467182 ARHGAP5Q13017 1502 aa19.66■□□□□ 0.74
COL4A1-202ENST00000467182 ITGAEP38570 1179 aa19.65■□□□□ 0.74
COL4A1-202ENST00000467182 CROCC2H7BZ55 1655 aa19.65■□□□□ 0.74
COL4A1-202ENST00000467182 ABCC5O15440 1437 aa19.64■□□□□ 0.73
COL4A1-202ENST00000467182 DAPK1P53355 1430 aa19.64■□□□□ 0.73
COL4A1-202ENST00000467182 GLI2P10070 1586 aa19.63■□□□□ 0.73
COL4A1-202ENST00000467182 ARHGEF5Q12774 1597 aa19.62■□□□□ 0.73
COL4A1-202ENST00000467182 MBD5Q9P267 1494 aa19.61■□□□□ 0.73
COL4A1-202ENST00000467182 ZNF777Q9ULD5 760 aaPredicted RBP19.61■□□□□ 0.73
COL4A1-202ENST00000467182 DIP2BQ9P265 1576 aa19.61■□□□□ 0.73
COL4A1-202ENST00000467182 MAP3K4Q9Y6R4 1608 aa19.6■□□□□ 0.73
COL4A1-202ENST00000467182 ABCC1P33527 1531 aa19.59■□□□□ 0.73
COL4A1-202ENST00000467182 SYCP2Q9BX26 1530 aa19.58■□□□□ 0.73
COL4A1-202ENST00000467182 ARHGEF12Q9NZN5 1544 aa19.58■□□□□ 0.73
COL4A1-202ENST00000467182 DNAJC5Q9H3Z4 198 aa19.58■□□□□ 0.72
COL4A1-202ENST00000467182 KIAA1107Q9UPP5 1409 aa19.58■□□□□ 0.72
COL4A1-202ENST00000467182 PLEKHH2Q8IVE3 1493 aa19.57■□□□□ 0.72
COL4A1-202ENST00000467182 ADGBQ8N7X0 1667 aa19.56■□□□□ 0.72
COL4A1-202ENST00000467182 AKNAQ7Z591 1439 aa19.56■□□□□ 0.72
COL4A1-202ENST00000467182 GCC2Q8IWJ2 1684 aa19.56■□□□□ 0.72
COL4A1-202ENST00000467182 SHANK2Q9UPX8 1470 aa19.55■□□□□ 0.72
COL4A1-202ENST00000467182 HFM1A2PYH4 1435 aa19.55■□□□□ 0.72
COL4A1-202ENST00000467182 EFCAB2Q5VUJ9 269 aa19.55■□□□□ 0.72
COL4A1-202ENST00000467182 CD109Q6YHK3 1445 aa19.55■□□□□ 0.72
COL4A1-202ENST00000467182 FANCAO15360 1455 aa19.54■□□□□ 0.72
COL4A1-202ENST00000467182 SETD5Q9C0A6 1442 aa19.54■□□□□ 0.72
COL4A1-202ENST00000467182 ADGRL2O95490 1459 aa19.54■□□□□ 0.72
COL4A1-202ENST00000467182 HNRNPMP52272 730 aaKnown RBP eCLIP19.53■□□□□ 0.72
COL4A1-202ENST00000467182 ROCK1Q13464 1354 aa19.53■□□□□ 0.72
COL4A1-202ENST00000467182 CCDC141Q6ZP82 1450 aa19.53■□□□□ 0.72
COL4A1-202ENST00000467182 KIF13AQ9H1H9 1805 aa19.53■□□□□ 0.72
COL4A1-202ENST00000467182 NAIPQ13075 1403 aa19.52■□□□□ 0.72
COL4A1-202ENST00000467182 CFAP74Q9C0B2 1584 aa19.52■□□□□ 0.71
COL4A1-202ENST00000467182 MAST1Q9Y2H9 1570 aa19.52■□□□□ 0.71
COL4A1-202ENST00000467182 RAB3GAP2Q9H2M9 1393 aa19.5■□□□□ 0.71
COL4A1-202ENST00000467182 CHIC2Q9UKJ5 165 aa19.5■□□□□ 0.71
COL4A1-202ENST00000467182 PPRC1Q5VV67 1664 aaKnown RBP19.49■□□□□ 0.71
COL4A1-202ENST00000467182 C9orf84Q5VXU9 1444 aa19.48■□□□□ 0.71
COL4A1-202ENST00000467182 KDM6BO15054 1643 aa19.47■□□□□ 0.71
COL4A1-202ENST00000467182 RSPH4AQ5TD94 716 aa19.47■□□□□ 0.71
COL4A1-202ENST00000467182 NCOA1Q15788 1441 aa19.47■□□□□ 0.71
COL4A1-202ENST00000467182 TRAPPC8Q9Y2L5 1435 aa19.47■□□□□ 0.71
COL4A1-202ENST00000467182 ADGRL1O94910 1474 aa19.46■□□□□ 0.71
COL4A1-202ENST00000467182 NEO1Q92859 1461 aa19.46■□□□□ 0.71
COL4A1-202ENST00000467182 HRCP23327 699 aa19.45■□□□□ 0.7
COL4A1-202ENST00000467182 FAM69CQ0P6D2 419 aa19.45■□□□□ 0.7
COL4A1-202ENST00000467182 RRP7BPQ9NSQ0 103 aa19.45■□□□□ 0.7
COL4A1-202ENST00000467182 SCAPERQ9BY12 1400 aa19.42■□□□□ 0.7
COL4A1-202ENST00000467182 PLXNC1O60486 1568 aa19.42■□□□□ 0.7
COL4A1-202ENST00000467182 ANKRD30AQ9BXX3 1397 aa19.41■□□□□ 0.7
COL4A1-202ENST00000467182 INO80Q9ULG1 1556 aaPredicted RBP19.4■□□□□ 0.7
COL4A1-202ENST00000467182 TSPY4P0CV99 314 aa19.4■□□□□ 0.7
COL4A1-202ENST00000467182 TSPY10P0CW01 314 aa19.4■□□□□ 0.7
COL4A1-202ENST00000467182 DHX57Q6P158 1386 aaKnown RBP19.4■□□□□ 0.7
COL4A1-202ENST00000467182 TSPOAP1O95153 1857 aa19.39■□□□□ 0.7
COL4A1-202ENST00000467182 ZFYVE16Q7Z3T8 1539 aa19.39■□□□□ 0.69
COL4A1-202ENST00000467182 KDM5CP41229 1560 aa19.38■□□□□ 0.69
COL4A1-202ENST00000467182 RTEL1-TNFRSF6BF6WH68 1400 aa19.37■□□□□ 0.69
COL4A1-202ENST00000467182 POGZQ7Z3K3 1410 aa19.37■□□□□ 0.69
COL4A1-202ENST00000467182 AFAP1Q8N556 730 aa19.36■□□□□ 0.69
COL4A1-202ENST00000467182 RICTORQ6R327 1708 aa19.35■□□□□ 0.69
COL4A1-202ENST00000467182 ZNF518AQ6AHZ1 1483 aa19.35■□□□□ 0.69
COL4A1-202ENST00000467182 KIF15Q9NS87 1388 aa19.34■□□□□ 0.69
COL4A1-202ENST00000467182 CCER1Q8TC90 406 aaPredicted RBP19.34■□□□□ 0.69
COL4A1-202ENST00000467182 ATP7AQ04656 1500 aa19.34■□□□□ 0.69
COL4A1-202ENST00000467182 KIDINS220Q9ULH0 1771 aa19.34■□□□□ 0.69
COL4A1-202ENST00000467182 TEX14Q8IWB6 1497 aa19.34■□□□□ 0.69
COL4A1-202ENST00000467182 FRMPD1Q5SYB0 1578 aa19.33■□□□□ 0.69
COL4A1-202ENST00000467182 DENND4BO75064 1496 aaPredicted RBP19.32■□□□□ 0.68
COL4A1-202ENST00000467182 ANKRD50Q9ULJ7 1429 aa19.32■□□□□ 0.68
COL4A1-202ENST00000467182 SPAG9O60271 1321 aaKnown RBP19.31■□□□□ 0.68
COL4A1-202ENST00000467182 DUOX2Q9NRD8 1548 aa19.3■□□□□ 0.68
COL4A1-202ENST00000467182 MLH3Q9UHC1 1453 aa19.29■□□□□ 0.68
COL4A1-202ENST00000467182 HECW2Q9P2P5 1572 aa19.29■□□□□ 0.68
COL4A1-202ENST00000467182 ERBINQ96RT1 1412 aa19.25■□□□□ 0.67
COL4A1-202ENST00000467182 ABCA6Q8N139 1617 aa19.25■□□□□ 0.67
COL4A1-202ENST00000467182 ZMYM4Q5VZL5 1548 aa19.25■□□□□ 0.67
COL4A1-202ENST00000467182 KDM5DQ9BY66 1539 aa19.25■□□□□ 0.67
COL4A1-202ENST00000467182 UNC13BO14795 1591 aa19.24■□□□□ 0.67
COL4A1-202ENST00000467182 RAPGEF3O95398 923 aa19.24■□□□□ 0.67
COL4A1-202ENST00000467182 ACIN1Q9UKV3 1341 aaKnown RBP19.24■□□□□ 0.67
COL4A1-202ENST00000467182 PZPP20742 1482 aa19.23■□□□□ 0.67
COL4A1-202ENST00000467182 CLSPNQ9HAW4 1339 aa19.23■□□□□ 0.67
COL4A1-202ENST00000467182 COL17A1Q9UMD9 1497 aaPredicted RBP19.22■□□□□ 0.67
COL4A1-202ENST00000467182 DIP2CQ9Y2E4 1556 aa19.21■□□□□ 0.67
COL4A1-202ENST00000467182 EIF2AK4Q9P2K8 1649 aaKnown RBP19.21■□□□□ 0.67
COL4A1-202ENST00000467182 MAGI2Q86UL8 1455 aa19.21■□□□□ 0.67
COL4A1-202ENST00000467182 DEPDC5O75140 1603 aa19.19■□□□□ 0.66
COL4A1-202ENST00000467182 DHX29Q7Z478 1369 aaKnown RBP19.19■□□□□ 0.66
COL4A1-202ENST00000467182 TRIM52Q96A61 297 aa19.18■□□□□ 0.66
COL4A1-202ENST00000467182 ZEB1P37275 1124 aaPredicted RBP19.17■□□□□ 0.66
COL4A1-202ENST00000467182 BCORL1Q5H9F3 1711 aa19.17■□□□□ 0.66
COL4A1-202ENST00000467182 A2MP01023 1474 aa19.16■□□□□ 0.66
COL4A1-202ENST00000467182 MPHOSPH9Q99550 1183 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms