RNA–Protein interactions for RNA: ENST00000467114.2

PRPF40A-205, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 546 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-205ENST00000467114 CHGAP10645 457 aaKnown RBP13.63□□□□□ -0.23
PRPF40A-205ENST00000467114 RIMBP2O15034 1052 aa13.62□□□□□ -0.23
PRPF40A-205ENST00000467114 PPP1R37O75864 691 aa13.62□□□□□ -0.23
PRPF40A-205ENST00000467114 DNAJC5Q9H3Z4 198 aa13.62□□□□□ -0.23
PRPF40A-205ENST00000467114 KIF3CO14782 793 aa13.61□□□□□ -0.23
PRPF40A-205ENST00000467114 ZSWIM6Q9HCJ5 1215 aa13.61□□□□□ -0.23
PRPF40A-205ENST00000467114 HS3ST6Q96QI5 342 aa13.6□□□□□ -0.23
PRPF40A-205ENST00000467114 POTEB3A0JP26 581 aa13.59□□□□□ -0.23
PRPF40A-205ENST00000467114 FAM205CA6NFA0 338 aa13.59□□□□□ -0.23
PRPF40A-205ENST00000467114 POTEBQ6S5H4 581 aa13.59□□□□□ -0.23
PRPF40A-205ENST00000467114 C2orf72A6NCS6 295 aa13.57□□□□□ -0.24
PRPF40A-205ENST00000467114 GPR153Q6NV75 609 aa13.55□□□□□ -0.24
PRPF40A-205ENST00000467114 NKX1-1Q15270 411 aaPredicted RBP13.53□□□□□ -0.24
PRPF40A-205ENST00000467114 TMC2Q8TDI7 906 aa13.5□□□□□ -0.25
PRPF40A-205ENST00000467114 ERBB3P21860 1342 aa13.49□□□□□ -0.25
PRPF40A-205ENST00000467114 ARSIQ5FYB1 569 aa13.47□□□□□ -0.25
PRPF40A-205ENST00000467114 KRTAP3-3Q9BYR6 98 aa13.47□□□□□ -0.25
PRPF40A-205ENST00000467114 KRTAP3-2Q9BYR7 98 aa13.47□□□□□ -0.25
PRPF40A-205ENST00000467114 RYDENQ9NUL5 291 aaKnown RBP13.46□□□□□ -0.25
PRPF40A-205ENST00000467114 SLC34A2O95436 690 aa13.44□□□□□ -0.26
PRPF40A-205ENST00000467114 SPNS2Q8IVW8 549 aa13.44□□□□□ -0.26
PRPF40A-205ENST00000467114 VARS2Q5ST30 1063 aaKnown RBP13.43□□□□□ -0.26
PRPF40A-205ENST00000467114 KHSRPQ92945 711 aaKnown RBP eCLIP13.4□□□□□ -0.263e-7■■■□□ 14.9
PRPF40A-205ENST00000467114 GPHNQ9NQX3 736 aaPredicted RBP13.4□□□□□ -0.26
PRPF40A-205ENST00000467114 FOXK1P85037 733 aa13.38□□□□□ -0.27
PRPF40A-205ENST00000467114 PCDHGA4Q9Y5G9 962 aa13.37□□□□□ -0.27
PRPF40A-205ENST00000467114 MMRN1Q13201 1228 aa13.36□□□□□ -0.27
PRPF40A-205ENST00000467114 ZNF687Q8N1G0 1237 aa13.36□□□□□ -0.27
PRPF40A-205ENST00000467114 ZNF316A6NFI3 1004 aaPredicted RBP13.35□□□□□ -0.27
PRPF40A-205ENST00000467114 GTPBP6O43824 516 aaPredicted RBP13.35□□□□□ -0.27
PRPF40A-205ENST00000467114 DCAF8L2P0C7V8 631 aa13.35□□□□□ -0.27
PRPF40A-205ENST00000467114 NUDT7P0C024 238 aa13.32□□□□□ -0.28
PRPF40A-205ENST00000467114 PLPP6Q8IY26 295 aa13.32□□□□□ -0.28
PRPF40A-205ENST00000467114 DSG2Q14126 1118 aa13.31□□□□□ -0.28
PRPF40A-205ENST00000467114 PTCD2Q8WV60 388 aaKnown RBP13.31□□□□□ -0.28
PRPF40A-205ENST00000467114 CRISPLD2Q9H0B8 497 aa13.29□□□□□ -0.28
PRPF40A-205ENST00000467114 KDM4FA0A1W2PPD8 638 aa13.26□□□□□ -0.29
PRPF40A-205ENST00000467114 LHX6Q9UPM6 363 aa13.26□□□□□ -0.29
PRPF40A-205ENST00000467114 NCKAP5LQ9HCH0 1330 aa13.22□□□□□ -0.29
PRPF40A-205ENST00000467114 PDE4AP27815 886 aa13.2□□□□□ -0.3
PRPF40A-205ENST00000467114 AMER1Q5JTC6 1135 aaPredicted RBP13.2□□□□□ -0.3
PRPF40A-205ENST00000467114 TBC1D12O60347 775 aa13.19□□□□□ -0.3
PRPF40A-205ENST00000467114 PPP1R15BQ5SWA1 713 aa13.18□□□□□ -0.3
PRPF40A-205ENST00000467114 PSDA5PKW4 1024 aaPredicted RBP13.17□□□□□ -0.3
PRPF40A-205ENST00000467114 PBX2P40425 430 aa13.16□□□□□ -0.3
PRPF40A-205ENST00000467114 OXER1Q8TDS5 423 aa13.16□□□□□ -0.3
PRPF40A-205ENST00000467114 POTEEQ6S8J3 1075 aa13.14□□□□□ -0.31
PRPF40A-205ENST00000467114 LSM11P83369 360 aaKnown RBP eCLIP13.13□□□□□ -0.31
PRPF40A-205ENST00000467114 BBXQ8WY36 941 aaPredicted RBP13.12□□□□□ -0.31
PRPF40A-205ENST00000467114 LARP6Q9BRS8 491 aaKnown RBP13.12□□□□□ -0.31
PRPF40A-205ENST00000467114 RTN4Q9NQC3 1192 aaKnown RBP13.12□□□□□ -0.31
PRPF40A-205ENST00000467114 MFSD10Q14728 455 aa13.11□□□□□ -0.31
PRPF40A-205ENST00000467114 ANKRD13DQ6ZTN6 518 aa13.11□□□□□ -0.31
PRPF40A-205ENST00000467114 DDX27Q96GQ7 796 aaKnown RBP13.1□□□□□ -0.31
PRPF40A-205ENST00000467114 PTGER2P43116 358 aa13.09□□□□□ -0.31
PRPF40A-205ENST00000467114 UPF1Q92900 1129 aaKnown RBP eCLIP13.09□□□□□ -0.31
PRPF40A-205ENST00000467114 CADPS2Q86UW7 1296 aa13.08□□□□□ -0.32
PRPF40A-205ENST00000467114 AXIN2Q9Y2T1 843 aa13.08□□□□□ -0.32
PRPF40A-205ENST00000467114 MYT1LQ9UL68 1186 aa13.07□□□□□ -0.32
PRPF40A-205ENST00000467114 ARHGAP33O14559 1287 aa13.05□□□□□ -0.32
PRPF40A-205ENST00000467114 PPP4R3BQ5MIZ7 849 aa13.05□□□□□ -0.32
PRPF40A-205ENST00000467114 RNF166Q96A37 237 aaPredicted RBP13.05□□□□□ -0.32
PRPF40A-205ENST00000467114 ANO8Q9HCE9 1232 aaPredicted RBP13.01□□□□□ -0.33
PRPF40A-205ENST00000467114 EMILIN3Q9NT22 766 aa12.98□□□□□ -0.33
PRPF40A-205ENST00000467114 EVI5O60447 810 aa12.97□□□□□ -0.33
PRPF40A-205ENST00000467114 PSEN2P49810 448 aa12.96□□□□□ -0.33
PRPF40A-205ENST00000467114 ADGRD1Q6QNK2 874 aa12.96□□□□□ -0.33
PRPF40A-205ENST00000467114 SPRYD3Q8NCJ5 442 aa12.96□□□□□ -0.33
PRPF40A-205ENST00000467114 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.96□□□□□ -0.33
PRPF40A-205ENST00000467114 TK2O00142 265 aa12.95□□□□□ -0.34
PRPF40A-205ENST00000467114 FOSBP53539 338 aa12.95□□□□□ -0.34
PRPF40A-205ENST00000467114 MAP3K9P80192 1104 aa12.95□□□□□ -0.34
PRPF40A-205ENST00000467114 DMRTA1Q5VZB9 504 aa12.95□□□□□ -0.34
PRPF40A-205ENST00000467114 ZNF454Q8N9F8 522 aa12.95□□□□□ -0.34
PRPF40A-205ENST00000467114 CAMK2BQ13554 666 aa12.93□□□□□ -0.34
PRPF40A-205ENST00000467114 BCL2L12Q9HB09 334 aa12.92□□□□□ -0.34
PRPF40A-205ENST00000467114 JPH4Q96JJ6 628 aa12.91□□□□□ -0.34
PRPF40A-205ENST00000467114 KCNK17Q96T54 332 aa12.91□□□□□ -0.34
PRPF40A-205ENST00000467114 KCNH8Q96L42 1107 aa12.9□□□□□ -0.34
PRPF40A-205ENST00000467114 HRO43593 1189 aa12.89□□□□□ -0.35
PRPF40A-205ENST00000467114 ZDHHC16Q969W1 377 aa12.85□□□□□ -0.35
PRPF40A-205ENST00000467114 SLC4A5Q9BY07 1137 aa12.84□□□□□ -0.35
PRPF40A-205ENST00000467114 PTPREP23469 700 aa12.83□□□□□ -0.36
PRPF40A-205ENST00000467114 PAXIP1Q6ZW49 1069 aaPredicted RBP12.83□□□□□ -0.36
PRPF40A-205ENST00000467114 VPS9D1Q9Y2B5 631 aa12.83□□□□□ -0.36
PRPF40A-205ENST00000467114 CFAP44Q96MT7 982 aa12.82□□□□□ -0.36
PRPF40A-205ENST00000467114 ADAM33Q9BZ11 813 aa12.82□□□□□ -0.36
PRPF40A-205ENST00000467114 PCDHGA10Q9Y5H3 936 aa12.81□□□□□ -0.36
PRPF40A-205ENST00000467114 DPYSL4O14531 572 aa12.8□□□□□ -0.36
PRPF40A-205ENST00000467114 PHF14O94880 888 aa12.78□□□□□ -0.36
PRPF40A-205ENST00000467114 ZBED2Q9BTP6 218 aa12.77□□□□□ -0.37
PRPF40A-205ENST00000467114 FBXW7Q969H0 707 aa12.76□□□□□ -0.37
PRPF40A-205ENST00000467114 TYW1BQ6NUM6 668 aa12.75□□□□□ -0.37
PRPF40A-205ENST00000467114 STAC3Q96MF2 364 aa12.75□□□□□ -0.37
PRPF40A-205ENST00000467114 HCSTQ9UBK5 93 aa12.74□□□□□ -0.37
PRPF40A-205ENST00000467114 BHMG1C9JSJ3 638 aaPredicted RBP12.73□□□□□ -0.37
PRPF40A-205ENST00000467114 PPP1R3GB7ZBB8 358 aa12.71□□□□□ -0.37
PRPF40A-205ENST00000467114 EPAS1Q99814 870 aa12.71□□□□□ -0.37
PRPF40A-205ENST00000467114 PDIA6Q15084 440 aa12.7□□□□□ -0.38
PRPF40A-205ENST00000467114 E2F4Q16254 413 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms