RNA–Protein interactions for RNA: ENST00000467077.1

XRN1-206, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 674 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-206ENST00000467077 MYT1LQ9UL68 1186 aa14.74□□□□□ -0.05
XRN1-206ENST00000467077 PHF8Q9UPP1 1060 aa14.74□□□□□ -0.05
XRN1-206ENST00000467077 RNF25Q96BH1 459 aaPredicted RBP14.72□□□□□ -0.05
XRN1-206ENST00000467077 MS4A4AQ96JQ5 239 aa14.72□□□□□ -0.05
XRN1-206ENST00000467077 GPR153Q6NV75 609 aa14.7□□□□□ -0.06
XRN1-206ENST00000467077 PTGER2P43116 358 aa14.68□□□□□ -0.06
XRN1-206ENST00000467077 TAOK2Q9UL54 1235 aa14.68□□□□□ -0.06
XRN1-206ENST00000467077 NLRP6P59044 892 aa14.66□□□□□ -0.06
XRN1-206ENST00000467077 ARSIQ5FYB1 569 aa14.63□□□□□ -0.07
XRN1-206ENST00000467077 BCL11BQ9C0K0 894 aaPredicted RBP14.59□□□□□ -0.07
XRN1-206ENST00000467077 ZNF316A6NFI3 1004 aaPredicted RBP14.58□□□□□ -0.08
XRN1-206ENST00000467077 ANKRD13DQ6ZTN6 518 aa14.58□□□□□ -0.08
XRN1-206ENST00000467077 STK24Q9Y6E0 443 aa14.55□□□□□ -0.08
XRN1-206ENST00000467077 FBXO22Q8NEZ5 403 aa14.53□□□□□ -0.08
XRN1-206ENST00000467077 KHSRPQ92945 711 aaKnown RBP eCLIP14.52□□□□□ -0.09
XRN1-206ENST00000467077 LSM11P83369 360 aaKnown RBP eCLIP14.5□□□□□ -0.09
XRN1-206ENST00000467077 STK25O00506 426 aa14.48□□□□□ -0.09
XRN1-206ENST00000467077 PBX2P40425 430 aa14.46□□□□□ -0.09
XRN1-206ENST00000467077 MFRPQ9BY79 579 aa14.46□□□□□ -0.09
XRN1-206ENST00000467077 C2orf72A6NCS6 295 aa14.45□□□□□ -0.1
XRN1-206ENST00000467077 NUDT7P0C024 238 aa14.45□□□□□ -0.1
XRN1-206ENST00000467077 KIF3CO14782 793 aa14.42□□□□□ -0.1
XRN1-206ENST00000467077 TMC2Q8TDI7 906 aa14.4□□□□□ -0.1
XRN1-206ENST00000467077 ECM2O94769 699 aaPredicted RBP14.38□□□□□ -0.11
XRN1-206ENST00000467077 LHX6Q9UPM6 363 aa14.37□□□□□ -0.11
XRN1-206ENST00000467077 PCDHGA4Q9Y5G9 962 aa14.37□□□□□ -0.11
XRN1-206ENST00000467077 SLC34A2O95436 690 aa14.34□□□□□ -0.11
XRN1-206ENST00000467077 AXIN2Q9Y2T1 843 aa14.31□□□□□ -0.12
XRN1-206ENST00000467077 PSDA5PKW4 1024 aaPredicted RBP14.29□□□□□ -0.12
XRN1-206ENST00000467077 HCSTQ9UBK5 93 aa14.27□□□□□ -0.13
XRN1-206ENST00000467077 POTEEQ6S8J3 1075 aa14.25□□□□□ -0.13
XRN1-206ENST00000467077 PLA2G2EQ9NZK7 142 aa14.25□□□□□ -0.13
XRN1-206ENST00000467077 ARHGAP33O14559 1287 aa14.24□□□□□ -0.13
XRN1-206ENST00000467077 ADGRD1Q6QNK2 874 aa14.23□□□□□ -0.13
XRN1-206ENST00000467077 RGL2O15211 777 aa14.19□□□□□ -0.14
XRN1-206ENST00000467077 TK2O00142 265 aa14.14□□□□□ -0.15
XRN1-206ENST00000467077 PPP1R37O75864 691 aa14.13□□□□□ -0.15
XRN1-206ENST00000467077 PPP4R3BQ5MIZ7 849 aa14.13□□□□□ -0.15
XRN1-206ENST00000467077 KCNH8Q96L42 1107 aa14.13□□□□□ -0.15
XRN1-206ENST00000467077 STAC3Q96MF2 364 aa14.13□□□□□ -0.15
XRN1-206ENST00000467077 PTCD2Q8WV60 388 aaKnown RBP14.12□□□□□ -0.15
XRN1-206ENST00000467077 PKD2Q13563 968 aa14.11□□□□□ -0.15
XRN1-206ENST00000467077 TBC1D12O60347 775 aa14.1□□□□□ -0.15
XRN1-206ENST00000467077 PSEN2P49810 448 aa14.09□□□□□ -0.15
XRN1-206ENST00000467077 FOXK1P85037 733 aa14.09□□□□□ -0.15
XRN1-206ENST00000467077 PLPP6Q8IY26 295 aa14.09□□□□□ -0.15
XRN1-206ENST00000467077 DMRTA1Q5VZB9 504 aa14.08□□□□□ -0.16
XRN1-206ENST00000467077 KDM4FA0A1W2PPD8 638 aa14.06□□□□□ -0.16
XRN1-206ENST00000467077 KCTD12Q96CX2 325 aaKnown RBP14.06□□□□□ -0.16
XRN1-206ENST00000467077 HRO43593 1189 aa14.05□□□□□ -0.16
XRN1-206ENST00000467077 GPHNQ9NQX3 736 aaPredicted RBP14.04□□□□□ -0.16
XRN1-206ENST00000467077 KCNK17Q96T54 332 aa14.02□□□□□ -0.17
XRN1-206ENST00000467077 DSG2Q14126 1118 aa14□□□□□ -0.17
XRN1-206ENST00000467077 HS6ST3Q8IZP7 471 aa13.95□□□□□ -0.18
XRN1-206ENST00000467077 ZNF454Q8N9F8 522 aa13.9□□□□□ -0.18
XRN1-206ENST00000467077 UPF1Q92900 1129 aaKnown RBP eCLIP13.9□□□□□ -0.18
XRN1-206ENST00000467077 VPS9D1Q9Y2B5 631 aa13.9□□□□□ -0.18
XRN1-206ENST00000467077 PTPN5P54829 565 aa13.89□□□□□ -0.19
XRN1-206ENST00000467077 OXER1Q8TDS5 423 aa13.86□□□□□ -0.19
XRN1-206ENST00000467077 RYDENQ9NUL5 291 aaKnown RBP13.86□□□□□ -0.19
XRN1-206ENST00000467077 BCL2L12Q9HB09 334 aa13.85□□□□□ -0.19
XRN1-206ENST00000467077 GOLGA8CPA6NN73 597 aa13.84□□□□□ -0.19
XRN1-206ENST00000467077 CHGAP10645 457 aaKnown RBP13.84□□□□□ -0.19
XRN1-206ENST00000467077 PTPREP23469 700 aa13.83□□□□□ -0.2
XRN1-206ENST00000467077 SLC4A5Q9BY07 1137 aa13.82□□□□□ -0.2
XRN1-206ENST00000467077 PPP1R15BQ5SWA1 713 aa13.81□□□□□ -0.2
XRN1-206ENST00000467077 RGS20O76081 388 aa13.78□□□□□ -0.2
XRN1-206ENST00000467077 THSD4Q6ZMP0 1018 aa13.78□□□□□ -0.2
XRN1-206ENST00000467077 MRPL50Q8N5N7 158 aaKnown RBP13.78□□□□□ -0.2
XRN1-206ENST00000467077 FOSBP53539 338 aa13.77□□□□□ -0.21
XRN1-206ENST00000467077 WNT2BQ93097 391 aa13.77□□□□□ -0.21
XRN1-206ENST00000467077 CRISPLD2Q9H0B8 497 aa13.77□□□□□ -0.21
XRN1-206ENST00000467077 IFFO2Q5TF58 517 aa13.76□□□□□ -0.21
XRN1-206ENST00000467077 NBPF3Q9H094 633 aa13.76□□□□□ -0.21
XRN1-206ENST00000467077 JPH4Q96JJ6 628 aa13.74□□□□□ -0.21
XRN1-206ENST00000467077 BHMG1C9JSJ3 638 aaPredicted RBP13.73□□□□□ -0.21
XRN1-206ENST00000467077 ZBED2Q9BTP6 218 aa13.73□□□□□ -0.21
XRN1-206ENST00000467077 IRX2Q9BZI1 471 aaPredicted RBP13.72□□□□□ -0.21
XRN1-206ENST00000467077 PDE4AP27815 886 aa13.71□□□□□ -0.21
XRN1-206ENST00000467077 ZDHHC16Q969W1 377 aa13.7□□□□□ -0.22
XRN1-206ENST00000467077 A0A0G2JS52 829 aa13.69□□□□□ -0.22
XRN1-206ENST00000467077 EVI5O60447 810 aa13.69□□□□□ -0.22
XRN1-206ENST00000467077 DNAJC5Q9H3Z4 198 aa13.69□□□□□ -0.22
XRN1-206ENST00000467077 NKX1-1Q15270 411 aaPredicted RBP13.68□□□□□ -0.22
XRN1-206ENST00000467077 ADAM33Q9BZ11 813 aa13.65□□□□□ -0.22
XRN1-206ENST00000467077 ANO8Q9HCE9 1232 aaPredicted RBP13.65□□□□□ -0.22
XRN1-206ENST00000467077 NCKAP5LQ9HCH0 1330 aa13.64□□□□□ -0.23
XRN1-206ENST00000467077 MAP3K9P80192 1104 aa13.62□□□□□ -0.23
XRN1-206ENST00000467077 ANKK1Q8NFD2 765 aa13.61□□□□□ -0.23
XRN1-206ENST00000467077 DDX27Q96GQ7 796 aaKnown RBP13.61□□□□□ -0.23
XRN1-206ENST00000467077 PPP1R3GB7ZBB8 358 aa13.6□□□□□ -0.23
XRN1-206ENST00000467077 LARP6Q9BRS8 491 aaKnown RBP13.59□□□□□ -0.23
XRN1-206ENST00000467077 RABGEF1Q9UJ41 708 aa13.56□□□□□ -0.24
XRN1-206ENST00000467077 PROX2Q3B8N5 592 aa13.52□□□□□ -0.25
XRN1-206ENST00000467077 FBXW7Q969H0 707 aa13.51□□□□□ -0.25
XRN1-206ENST00000467077 ITGBL1O95965 494 aaPredicted RBP13.5□□□□□ -0.25
XRN1-206ENST00000467077 PCDHGA10Q9Y5H3 936 aa13.5□□□□□ -0.25
XRN1-206ENST00000467077 BCAMP50895 628 aa13.49□□□□□ -0.25
XRN1-206ENST00000467077 MFSD10Q14728 455 aa13.49□□□□□ -0.25
XRN1-206ENST00000467077 TYW1BQ6NUM6 668 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms