RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 SCAPERQ9BY12 1400 aa31.35■■■□□ 2.61
COL9A3-206ENST00000466532 SIGLEC1Q9BZZ2 1709 aa31.35■■■□□ 2.61
COL9A3-206ENST00000466532 RIMS1Q86UR5 1692 aaKnown RBP31.35■■■□□ 2.61
COL9A3-206ENST00000466532 CLIP1P30622 1438 aa31.34■■■□□ 2.61
COL9A3-206ENST00000466532 POGZQ7Z3K3 1410 aa31.33■■■□□ 2.61
COL9A3-206ENST00000466532 MAGI2Q86UL8 1455 aa31.33■■■□□ 2.61
COL9A3-206ENST00000466532 YEATS2Q9ULM3 1422 aa31.32■■■□□ 2.6
COL9A3-206ENST00000466532 CASKIN1Q8WXD9 1431 aa31.3■■■□□ 2.6
COL9A3-206ENST00000466532 EFCAB2Q5VUJ9 269 aa31.29■■■□□ 2.6
COL9A3-206ENST00000466532 CDC42BPBQ9Y5S2 1711 aa31.29■■■□□ 2.6
COL9A3-206ENST00000466532 ARHGAP5Q13017 1502 aa31.29■■■□□ 2.6
COL9A3-206ENST00000466532 CCDC18Q5T9S5 1454 aa31.28■■■□□ 2.6
COL9A3-206ENST00000466532 PREX2Q70Z35 1606 aa31.22■■■□□ 2.59
COL9A3-206ENST00000466532 FER1L4A9Z1Z3 1794 aa31.22■■■□□ 2.59
COL9A3-206ENST00000466532 FYCO1Q9BQS8 1478 aa31.21■■■□□ 2.59
COL9A3-206ENST00000466532 ZNF518AQ6AHZ1 1483 aa31.18■■■□□ 2.58
COL9A3-206ENST00000466532 CDC42BPAQ5VT25 1732 aa31.18■■■□□ 2.58
COL9A3-206ENST00000466532 KDM5CP41229 1560 aa31.17■■■□□ 2.58
COL9A3-206ENST00000466532 ATP10AO60312 1499 aa31.16■■■□□ 2.58
COL9A3-206ENST00000466532 C9orf84Q5VXU9 1444 aa31.14■■■□□ 2.58
COL9A3-206ENST00000466532 ITSN2Q9NZM3 1697 aa31.13■■■□□ 2.57
COL9A3-206ENST00000466532 MLECQ14165 292 aa31.12■■■□□ 2.57
COL9A3-206ENST00000466532 ILDR1Q86SU0 546 aaPredicted RBP31.12■■■□□ 2.57
COL9A3-206ENST00000466532 ABCC1P33527 1531 aa31.09■■■□□ 2.57
COL9A3-206ENST00000466532 LMTK3Q96Q04 1460 aa31.09■■■□□ 2.57
COL9A3-206ENST00000466532 AFAP1Q8N556 730 aa31.09■■■□□ 2.57
COL9A3-206ENST00000466532 PLPPR3Q6T4P5 718 aa31.07■■■□□ 2.56
COL9A3-206ENST00000466532 DIP2CQ9Y2E4 1556 aa31.06■■■□□ 2.56
COL9A3-206ENST00000466532 ARHGEF12Q9NZN5 1544 aa31.06■■■□□ 2.56
COL9A3-206ENST00000466532 ABCA6Q8N139 1617 aa31.05■■■□□ 2.56
COL9A3-206ENST00000466532 MYT1LQ9UL68 1186 aa31.04■■■□□ 2.56
COL9A3-206ENST00000466532 MLH3Q9UHC1 1453 aa31■■■□□ 2.55
COL9A3-206ENST00000466532 REREQ9P2R6 1566 aa31■■■□□ 2.55
COL9A3-206ENST00000466532 TRAPPC8Q9Y2L5 1435 aa30.99■■■□□ 2.55
COL9A3-206ENST00000466532 KIDINS220Q9ULH0 1771 aa30.97■■■□□ 2.55
COL9A3-206ENST00000466532 SAMD9LQ8IVG5 1584 aa30.96■■■□□ 2.55
COL9A3-206ENST00000466532 GPATCH8Q9UKJ3 1502 aaKnown RBP30.93■■■□□ 2.54
COL9A3-206ENST00000466532 PREX1Q8TCU6 1659 aa30.93■■■□□ 2.54
COL9A3-206ENST00000466532 ZNF777Q9ULD5 760 aaPredicted RBP30.91■■■□□ 2.54
COL9A3-206ENST00000466532 SYCP2Q9BX26 1530 aa30.9■■■□□ 2.54
COL9A3-206ENST00000466532 HSPA2P54652 639 aa30.89■■■□□ 2.54
COL9A3-206ENST00000466532 AGLP35573 1532 aa30.88■■■□□ 2.53
COL9A3-206ENST00000466532 MTUS2Q5JR59 1369 aa30.87■■■□□ 2.53
COL9A3-206ENST00000466532 CEP162Q5TB80 1403 aa30.85■■■□□ 2.53
COL9A3-206ENST00000466532 C3P01024 1663 aa30.84■■■□□ 2.53
COL9A3-206ENST00000466532 CCNB3Q8WWL7 1395 aa30.83■■■□□ 2.53
COL9A3-206ENST00000466532 CEBPAP49715 358 aaPredicted RBP30.83■■■□□ 2.53
COL9A3-206ENST00000466532 SETD1BQ9UPS6 1966 aaKnown RBP30.83■■■□□ 2.53
COL9A3-206ENST00000466532 EHBP1L1Q8N3D4 1523 aa30.82■■■□□ 2.52
COL9A3-206ENST00000466532 PLEKHH2Q8IVE3 1493 aa30.8■■■□□ 2.52
COL9A3-206ENST00000466532 SUPT6HQ7KZ85 1726 aaKnown RBP30.79■■■□□ 2.52
COL9A3-206ENST00000466532 HNRNPMP52272 730 aaKnown RBP eCLIP30.79■■■□□ 2.52
COL9A3-206ENST00000466532 CFDP1Q9UEE9 299 aaPredicted RBP30.79■■■□□ 2.52
COL9A3-206ENST00000466532 TIAM1Q13009 1591 aa30.79■■■□□ 2.52
COL9A3-206ENST00000466532 KIAA1107Q9UPP5 1409 aa30.77■■■□□ 2.52
COL9A3-206ENST00000466532 ATP7AQ04656 1500 aa30.77■■■□□ 2.52
COL9A3-206ENST00000466532 INO80Q9ULG1 1556 aaPredicted RBP30.76■■■□□ 2.52
COL9A3-206ENST00000466532 SPAG9O60271 1321 aaKnown RBP30.75■■■□□ 2.51
COL9A3-206ENST00000466532 ESF1Q9H501 851 aaKnown RBP30.73■■■□□ 2.51
COL9A3-206ENST00000466532 FBXO41Q8TF61 875 aa30.71■■■□□ 2.51
COL9A3-206ENST00000466532 UHRF1BP1Q6BDS2 1440 aa30.7■■■□□ 2.5
COL9A3-206ENST00000466532 MROH2AA6NES4 1674 aa30.69■■■□□ 2.5
COL9A3-206ENST00000466532 ADGBQ8N7X0 1667 aa30.68■■■□□ 2.5
COL9A3-206ENST00000466532 PLXNC1O60486 1568 aa30.67■■■□□ 2.5
COL9A3-206ENST00000466532 STRCQ7RTU9 1775 aa30.67■■■□□ 2.5
COL9A3-206ENST00000466532 CNTLNQ9NXG0 1405 aa30.67■■■□□ 2.5
COL9A3-206ENST00000466532 A2MP01023 1474 aa30.63■■■□□ 2.49
COL9A3-206ENST00000466532 CLTCQ00610 1675 aaKnown RBP30.63■■■□□ 2.49
COL9A3-206ENST00000466532 ZNF644Q9H582 1327 aaPredicted RBP30.63■■■□□ 2.49
COL9A3-206ENST00000466532 NCOA2Q15596 1464 aa30.59■■■□□ 2.49
COL9A3-206ENST00000466532 MBD5Q9P267 1494 aa30.59■■■□□ 2.49
COL9A3-206ENST00000466532 LOC105371045A0A1W2PR82 267 aa30.56■■■□□ 2.48
COL9A3-206ENST00000466532 VPS8Q8N3P4 1428 aa30.54■■■□□ 2.48
COL9A3-206ENST00000466532 CAMSAP2Q08AD1 1489 aa30.52■■■□□ 2.48
COL9A3-206ENST00000466532 RTEL1-TNFRSF6BF6WH68 1400 aa30.51■■■□□ 2.47
COL9A3-206ENST00000466532 ZMYM3Q14202 1370 aa30.51■■■□□ 2.47
COL9A3-206ENST00000466532 NPATQ14207 1427 aa30.5■■■□□ 2.47
COL9A3-206ENST00000466532 DMRT2Q9Y5R5 561 aa30.49■■■□□ 2.47
COL9A3-206ENST00000466532 GGT6Q6P531 493 aa30.48■■■□□ 2.47
COL9A3-206ENST00000466532 CCDC141Q6ZP82 1450 aa30.48■■■□□ 2.47
COL9A3-206ENST00000466532 CERKQ8TCT0 537 aa30.47■■■□□ 2.47
COL9A3-206ENST00000466532 LRRC9Q6ZRR7 1453 aa30.45■■■□□ 2.47
COL9A3-206ENST00000466532 MYO3AQ8NEV4 1616 aa30.44■■■□□ 2.46
COL9A3-206ENST00000466532 ARHGEF5Q12774 1597 aa30.43■■■□□ 2.46
COL9A3-206ENST00000466532 ZNF142P52746 1687 aaPredicted RBP30.42■■■□□ 2.46
COL9A3-206ENST00000466532 DHX29Q7Z478 1369 aaKnown RBP30.41■■■□□ 2.46
COL9A3-206ENST00000466532 CAMSAP1Q5T5Y3 1602 aa30.4■■■□□ 2.46
COL9A3-206ENST00000466532 PTPRTO14522 1441 aa30.39■■■□□ 2.46
COL9A3-206ENST00000466532 RSPH4AQ5TD94 716 aa30.39■■■□□ 2.46
COL9A3-206ENST00000466532 PTPRKQ15262 1439 aa30.39■■■□□ 2.45
COL9A3-206ENST00000466532 NCOA1Q15788 1441 aa30.39■■■□□ 2.45
COL9A3-206ENST00000466532 MAP3K1Q13233 1512 aa30.38■■■□□ 2.45
COL9A3-206ENST00000466532 PPP6R1Q9UPN7 881 aa30.38■■■□□ 2.45
COL9A3-206ENST00000466532 CEP170BQ9Y4F5 1589 aaPredicted RBP30.34■■■□□ 2.45
COL9A3-206ENST00000466532 KIF3BO15066 747 aa30.31■■■□□ 2.44
COL9A3-206ENST00000466532 KANK4Q5T7N3 995 aaPredicted RBP30.31■■■□□ 2.44
COL9A3-206ENST00000466532 KDM5DQ9BY66 1539 aa30.29■■■□□ 2.44
COL9A3-206ENST00000466532 TSPY4P0CV99 314 aa30.29■■■□□ 2.44
COL9A3-206ENST00000466532 TSPY10P0CW01 314 aa30.29■■■□□ 2.44
COL9A3-206ENST00000466532 MAST1Q9Y2H9 1570 aa30.28■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms