RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 ATP1B4Q9UN42 357 aaPredicted RBP34.16■■■■□ 3.06
COL6A1-203ENST00000466285 POGZQ7Z3K3 1410 aa34.14■■■■□ 3.06
COL6A1-203ENST00000466285 ARID4BQ4LE39 1312 aaPredicted RBP34.13■■■■□ 3.05
COL6A1-203ENST00000466285 SCAPERQ9BY12 1400 aa34.1■■■■□ 3.05
COL6A1-203ENST00000466285 TROQ12816 1431 aaPredicted RBP34.07■■■■□ 3.04
COL6A1-203ENST00000466285 CDC42BPBQ9Y5S2 1711 aa34.04■■■■□ 3.04
COL6A1-203ENST00000466285 LMTK3Q96Q04 1460 aa34.04■■■■□ 3.04
COL6A1-203ENST00000466285 FER1L4A9Z1Z3 1794 aa34.03■■■■□ 3.04
COL6A1-203ENST00000466285 MAGI2Q86UL8 1455 aa34.01■■■■□ 3.04
COL6A1-203ENST00000466285 ARHGAP5Q13017 1502 aa34■■■■□ 3.03
COL6A1-203ENST00000466285 PREX2Q70Z35 1606 aa33.97■■■■□ 3.03
COL6A1-203ENST00000466285 KDM5CP41229 1560 aa33.96■■■■□ 3.03
COL6A1-203ENST00000466285 CASKIN1Q8WXD9 1431 aa33.96■■■■□ 3.03
COL6A1-203ENST00000466285 CLIP1P30622 1438 aa33.92■■■■□ 3.02
COL6A1-203ENST00000466285 CDC42BPAQ5VT25 1732 aa33.9■■■■□ 3.02
COL6A1-203ENST00000466285 ABCA6Q8N139 1617 aa33.9■■■■□ 3.02
COL6A1-203ENST00000466285 DIP2CQ9Y2E4 1556 aa33.89■■■■□ 3.02
COL6A1-203ENST00000466285 ARHGEF12Q9NZN5 1544 aa33.89■■■■□ 3.02
COL6A1-203ENST00000466285 MLECQ14165 292 aa33.89■■■■□ 3.02
COL6A1-203ENST00000466285 EFCAB2Q5VUJ9 269 aa33.89■■■■□ 3.02
COL6A1-203ENST00000466285 PLPPR3Q6T4P5 718 aa33.89■■■■□ 3.02
COL6A1-203ENST00000466285 CDK11AQ9UQ88 783 aaPredicted RBP33.89■■■■□ 3.02
COL6A1-203ENST00000466285 ATP10AO60312 1499 aa33.88■■■■□ 3.01
COL6A1-203ENST00000466285 CCDC18Q5T9S5 1454 aa33.88■■■■□ 3.01
COL6A1-203ENST00000466285 C9orf84Q5VXU9 1444 aa33.88■■■■□ 3.01
COL6A1-203ENST00000466285 ITSN2Q9NZM3 1697 aa33.88■■■■□ 3.01
COL6A1-203ENST00000466285 ABCC1P33527 1531 aa33.88■■■■□ 3.01
COL6A1-203ENST00000466285 ZNF518AQ6AHZ1 1483 aa33.88■■■■□ 3.01
COL6A1-203ENST00000466285 FYCO1Q9BQS8 1478 aa33.84■■■■□ 3.01
COL6A1-203ENST00000466285 AFAP1Q8N556 730 aa33.82■■■■□ 3
COL6A1-203ENST00000466285 TRAPPC8Q9Y2L5 1435 aa33.79■■■■□ 3
COL6A1-203ENST00000466285 HSPA2P54652 639 aa33.78■■■■□ 3
COL6A1-203ENST00000466285 SAMD9LQ8IVG5 1584 aa33.74■■■□□ 2.99
COL6A1-203ENST00000466285 KIDINS220Q9ULH0 1771 aa33.74■■■□□ 2.99
COL6A1-203ENST00000466285 REREQ9P2R6 1566 aa33.73■■■□□ 2.99
COL6A1-203ENST00000466285 PREX1Q8TCU6 1659 aa33.7■■■□□ 2.99
COL6A1-203ENST00000466285 MLH3Q9UHC1 1453 aa33.69■■■□□ 2.98
COL6A1-203ENST00000466285 SYCP2Q9BX26 1530 aa33.66■■■□□ 2.98
COL6A1-203ENST00000466285 CEBPAP49715 358 aaPredicted RBP33.65■■■□□ 2.98
COL6A1-203ENST00000466285 C3P01024 1663 aa33.63■■■□□ 2.97
COL6A1-203ENST00000466285 GPATCH8Q9UKJ3 1502 aaKnown RBP33.63■■■□□ 2.97
COL6A1-203ENST00000466285 AGLP35573 1532 aa33.58■■■□□ 2.97
COL6A1-203ENST00000466285 MYT1LQ9UL68 1186 aa33.58■■■□□ 2.97
COL6A1-203ENST00000466285 STRCQ7RTU9 1775 aa33.54■■■□□ 2.96
COL6A1-203ENST00000466285 INO80Q9ULG1 1556 aaPredicted RBP33.53■■■□□ 2.96
COL6A1-203ENST00000466285 FBXO41Q8TF61 875 aa33.53■■■□□ 2.96
COL6A1-203ENST00000466285 ZNF777Q9ULD5 760 aaPredicted RBP33.52■■■□□ 2.96
COL6A1-203ENST00000466285 TIAM1Q13009 1591 aa33.51■■■□□ 2.96
COL6A1-203ENST00000466285 SUPT6HQ7KZ85 1726 aaKnown RBP33.5■■■□□ 2.95
COL6A1-203ENST00000466285 ATP7AQ04656 1500 aa33.47■■■□□ 2.95
COL6A1-203ENST00000466285 PLXNC1O60486 1568 aa33.44■■■□□ 2.94
COL6A1-203ENST00000466285 HNRNPMP52272 730 aaKnown RBP eCLIP33.44■■■□□ 2.94
COL6A1-203ENST00000466285 CEP162Q5TB80 1403 aa33.44■■■□□ 2.94
COL6A1-203ENST00000466285 EHBP1L1Q8N3D4 1523 aa33.43■■■□□ 2.94
COL6A1-203ENST00000466285 UHRF1BP1Q6BDS2 1440 aa33.41■■■□□ 2.94
COL6A1-203ENST00000466285 MTUS2Q5JR59 1369 aa33.4■■■□□ 2.94
COL6A1-203ENST00000466285 CCNB3Q8WWL7 1395 aa33.4■■■□□ 2.94
COL6A1-203ENST00000466285 SETD1BQ9UPS6 1966 aaKnown RBP33.39■■■□□ 2.94
COL6A1-203ENST00000466285 MROH2AA6NES4 1674 aa33.37■■■□□ 2.93
COL6A1-203ENST00000466285 KIAA1107Q9UPP5 1409 aa33.36■■■□□ 2.93
COL6A1-203ENST00000466285 CLTCQ00610 1675 aaKnown RBP33.36■■■□□ 2.93
COL6A1-203ENST00000466285 SPAG9O60271 1321 aaKnown RBP33.35■■■□□ 2.93
COL6A1-203ENST00000466285 ZNF644Q9H582 1327 aaPredicted RBP33.35■■■□□ 2.93
COL6A1-203ENST00000466285 PLEKHH2Q8IVE3 1493 aa33.34■■■□□ 2.93
COL6A1-203ENST00000466285 CFDP1Q9UEE9 299 aaPredicted RBP33.34■■■□□ 2.93
COL6A1-203ENST00000466285 A2MP01023 1474 aa33.3■■■□□ 2.92
COL6A1-203ENST00000466285 MBD5Q9P267 1494 aa33.3■■■□□ 2.92
COL6A1-203ENST00000466285 ADGBQ8N7X0 1667 aa33.29■■■□□ 2.92
COL6A1-203ENST00000466285 CNTLNQ9NXG0 1405 aa33.28■■■□□ 2.92
COL6A1-203ENST00000466285 CERKQ8TCT0 537 aa33.24■■■□□ 2.91
COL6A1-203ENST00000466285 NCOA2Q15596 1464 aa33.23■■■□□ 2.91
COL6A1-203ENST00000466285 MYO3AQ8NEV4 1616 aa33.22■■■□□ 2.91
COL6A1-203ENST00000466285 ESF1Q9H501 851 aaKnown RBP33.21■■■□□ 2.91
COL6A1-203ENST00000466285 CAMSAP2Q08AD1 1489 aa33.18■■■□□ 2.9
COL6A1-203ENST00000466285 ZNF142P52746 1687 aaPredicted RBP33.17■■■□□ 2.9
COL6A1-203ENST00000466285 ZMYM3Q14202 1370 aa33.17■■■□□ 2.9
COL6A1-203ENST00000466285 NPATQ14207 1427 aa33.17■■■□□ 2.9
COL6A1-203ENST00000466285 NCOA1Q15788 1441 aa33.17■■■□□ 2.9
COL6A1-203ENST00000466285 CAMSAP1Q5T5Y3 1602 aa33.16■■■□□ 2.9
COL6A1-203ENST00000466285 PTPRTO14522 1441 aa33.11■■■□□ 2.89
COL6A1-203ENST00000466285 PTPRKQ15262 1439 aa33.11■■■□□ 2.89
COL6A1-203ENST00000466285 LTBP4Q8N2S1 1624 aa33.1■■■□□ 2.89
COL6A1-203ENST00000466285 CCDC141Q6ZP82 1450 aa33.1■■■□□ 2.89
COL6A1-203ENST00000466285 CEP170BQ9Y4F5 1589 aaPredicted RBP33.09■■■□□ 2.89
COL6A1-203ENST00000466285 LOC105371045A0A1W2PR82 267 aa33.09■■■□□ 2.89
COL6A1-203ENST00000466285 GGT6Q6P531 493 aa33.08■■■□□ 2.89
COL6A1-203ENST00000466285 RTEL1-TNFRSF6BF6WH68 1400 aa33.07■■■□□ 2.88
COL6A1-203ENST00000466285 VPS8Q8N3P4 1428 aa33.06■■■□□ 2.88
COL6A1-203ENST00000466285 LRRC9Q6ZRR7 1453 aa33.03■■■□□ 2.88
COL6A1-203ENST00000466285 ARHGEF5Q12774 1597 aa33.02■■■□□ 2.88
COL6A1-203ENST00000466285 DMRT2Q9Y5R5 561 aa33.02■■■□□ 2.88
COL6A1-203ENST00000466285 DHX29Q7Z478 1369 aaKnown RBP33■■■□□ 2.87
COL6A1-203ENST00000466285 NCKAP5LQ9HCH0 1330 aa32.96■■■□□ 2.87
COL6A1-203ENST00000466285 KDM5DQ9BY66 1539 aa32.94■■■□□ 2.86
COL6A1-203ENST00000466285 DNMT1P26358 1616 aaKnown RBP32.94■■■□□ 2.86
COL6A1-203ENST00000466285 TCOF1Q13428 1488 aaKnown RBP32.93■■■□□ 2.86
COL6A1-203ENST00000466285 PLA2R1Q13018 1463 aa32.93■■■□□ 2.86
COL6A1-203ENST00000466285 KANK4Q5T7N3 995 aaPredicted RBP32.92■■■□□ 2.86
COL6A1-203ENST00000466285 MAST1Q9Y2H9 1570 aa32.89■■■□□ 2.86
COL6A1-203ENST00000466285 KIF3BO15066 747 aa32.88■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms