RNA–Protein interactions for RNA: ENST00000466054.1

LRCH3-211, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 2

Gene LRCH3, Length 683 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-211ENST00000466054 ZNF687Q8N1G0 1237 aa13.56□□□□□ -0.24
LRCH3-211ENST00000466054 PHF8Q9UPP1 1060 aa13.56□□□□□ -0.24
LRCH3-211ENST00000466054 PTGER2P43116 358 aa13.52□□□□□ -0.25
LRCH3-211ENST00000466054 GPR153Q6NV75 609 aa13.52□□□□□ -0.25
LRCH3-211ENST00000466054 MS4A4AQ96JQ5 239 aa13.51□□□□□ -0.25
LRCH3-211ENST00000466054 ARSIQ5FYB1 569 aa13.5□□□□□ -0.25
LRCH3-211ENST00000466054 TAOK2Q9UL54 1235 aa13.5□□□□□ -0.25
LRCH3-211ENST00000466054 ANKRD13DQ6ZTN6 518 aa13.49□□□□□ -0.25
LRCH3-211ENST00000466054 NLRP6P59044 892 aa13.48□□□□□ -0.25
LRCH3-211ENST00000466054 RNF25Q96BH1 459 aaPredicted RBP13.47□□□□□ -0.25
LRCH3-211ENST00000466054 ZNF316A6NFI3 1004 aaPredicted RBP13.42□□□□□ -0.26
LRCH3-211ENST00000466054 BCL11BQ9C0K0 894 aaPredicted RBP13.41□□□□□ -0.26
LRCH3-211ENST00000466054 STK24Q9Y6E0 443 aa13.4□□□□□ -0.26
LRCH3-211ENST00000466054 KHSRPQ92945 711 aaKnown RBP eCLIP13.39□□□□□ -0.27
LRCH3-211ENST00000466054 LSM11P83369 360 aaKnown RBP eCLIP13.36□□□□□ -0.27
LRCH3-211ENST00000466054 FBXO22Q8NEZ5 403 aa13.32□□□□□ -0.28
LRCH3-211ENST00000466054 STK25O00506 426 aa13.31□□□□□ -0.28
LRCH3-211ENST00000466054 NUDT7P0C024 238 aa13.31□□□□□ -0.28
LRCH3-211ENST00000466054 PBX2P40425 430 aa13.31□□□□□ -0.28
LRCH3-211ENST00000466054 C2orf72A6NCS6 295 aa13.29□□□□□ -0.28
LRCH3-211ENST00000466054 TMC2Q8TDI7 906 aa13.27□□□□□ -0.29
LRCH3-211ENST00000466054 MFRPQ9BY79 579 aa13.27□□□□□ -0.29
LRCH3-211ENST00000466054 LHX6Q9UPM6 363 aa13.23□□□□□ -0.29
LRCH3-211ENST00000466054 PCDHGA4Q9Y5G9 962 aa13.23□□□□□ -0.29
LRCH3-211ENST00000466054 KIF3CO14782 793 aa13.22□□□□□ -0.29
LRCH3-211ENST00000466054 AXIN2Q9Y2T1 843 aa13.22□□□□□ -0.29
LRCH3-211ENST00000466054 ECM2O94769 699 aaPredicted RBP13.21□□□□□ -0.29
LRCH3-211ENST00000466054 SLC34A2O95436 690 aa13.18□□□□□ -0.3
LRCH3-211ENST00000466054 HCSTQ9UBK5 93 aa13.18□□□□□ -0.3
LRCH3-211ENST00000466054 PLA2G2EQ9NZK7 142 aa13.17□□□□□ -0.3
LRCH3-211ENST00000466054 PSDA5PKW4 1024 aaPredicted RBP13.16□□□□□ -0.3
LRCH3-211ENST00000466054 ARHGAP33O14559 1287 aa13.12□□□□□ -0.31
LRCH3-211ENST00000466054 ADGRD1Q6QNK2 874 aa13.11□□□□□ -0.31
LRCH3-211ENST00000466054 POTEEQ6S8J3 1075 aa13.09□□□□□ -0.31
LRCH3-211ENST00000466054 STAC3Q96MF2 364 aa13.09□□□□□ -0.31
LRCH3-211ENST00000466054 KCNH8Q96L42 1107 aa13.04□□□□□ -0.32
LRCH3-211ENST00000466054 RGL2O15211 777 aa13.02□□□□□ -0.33
LRCH3-211ENST00000466054 TK2O00142 265 aa13.01□□□□□ -0.33
LRCH3-211ENST00000466054 PPP4R3BQ5MIZ7 849 aa13.01□□□□□ -0.33
LRCH3-211ENST00000466054 TBC1D12O60347 775 aa13□□□□□ -0.33
LRCH3-211ENST00000466054 PPP1R37O75864 691 aa12.99□□□□□ -0.33
LRCH3-211ENST00000466054 PSEN2P49810 448 aa12.98□□□□□ -0.33
LRCH3-211ENST00000466054 PTCD2Q8WV60 388 aaKnown RBP12.98□□□□□ -0.33
LRCH3-211ENST00000466054 KCTD12Q96CX2 325 aaKnown RBP12.97□□□□□ -0.33
LRCH3-211ENST00000466054 DMRTA1Q5VZB9 504 aa12.96□□□□□ -0.33
LRCH3-211ENST00000466054 PLPP6Q8IY26 295 aa12.96□□□□□ -0.33
LRCH3-211ENST00000466054 FOXK1P85037 733 aa12.93□□□□□ -0.34
LRCH3-211ENST00000466054 PKD2Q13563 968 aa12.93□□□□□ -0.34
LRCH3-211ENST00000466054 KCNK17Q96T54 332 aa12.92□□□□□ -0.34
LRCH3-211ENST00000466054 HRO43593 1189 aa12.91□□□□□ -0.34
LRCH3-211ENST00000466054 KDM4FA0A1W2PPD8 638 aa12.89□□□□□ -0.35
LRCH3-211ENST00000466054 GPHNQ9NQX3 736 aaPredicted RBP12.89□□□□□ -0.35
LRCH3-211ENST00000466054 DSG2Q14126 1118 aa12.86□□□□□ -0.35
LRCH3-211ENST00000466054 PTPN5P54829 565 aa12.85□□□□□ -0.35
LRCH3-211ENST00000466054 GOLGA8CPA6NN73 597 aa12.81□□□□□ -0.36
LRCH3-211ENST00000466054 ZNF454Q8N9F8 522 aa12.81□□□□□ -0.36
LRCH3-211ENST00000466054 UPF1Q92900 1129 aaKnown RBP eCLIP12.81□□□□□ -0.36
LRCH3-211ENST00000466054 VPS9D1Q9Y2B5 631 aa12.79□□□□□ -0.36
LRCH3-211ENST00000466054 HS6ST3Q8IZP7 471 aa12.78□□□□□ -0.36
LRCH3-211ENST00000466054 CHGAP10645 457 aaKnown RBP12.73□□□□□ -0.37
LRCH3-211ENST00000466054 PTPREP23469 700 aa12.73□□□□□ -0.37
LRCH3-211ENST00000466054 OXER1Q8TDS5 423 aa12.73□□□□□ -0.37
LRCH3-211ENST00000466054 MRPL50Q8N5N7 158 aaKnown RBP12.72□□□□□ -0.37
LRCH3-211ENST00000466054 BCL2L12Q9HB09 334 aa12.72□□□□□ -0.37
LRCH3-211ENST00000466054 RYDENQ9NUL5 291 aaKnown RBP12.72□□□□□ -0.37
LRCH3-211ENST00000466054 RGS20O76081 388 aa12.7□□□□□ -0.38
LRCH3-211ENST00000466054 WNT2BQ93097 391 aa12.7□□□□□ -0.38
LRCH3-211ENST00000466054 THSD4Q6ZMP0 1018 aa12.69□□□□□ -0.38
LRCH3-211ENST00000466054 SLC4A5Q9BY07 1137 aa12.69□□□□□ -0.38
LRCH3-211ENST00000466054 PPP1R15BQ5SWA1 713 aa12.68□□□□□ -0.38
LRCH3-211ENST00000466054 IRX2Q9BZI1 471 aaPredicted RBP12.68□□□□□ -0.38
LRCH3-211ENST00000466054 NBPF3Q9H094 633 aa12.67□□□□□ -0.38
LRCH3-211ENST00000466054 FOSBP53539 338 aa12.65□□□□□ -0.38
LRCH3-211ENST00000466054 IFFO2Q5TF58 517 aa12.64□□□□□ -0.39
LRCH3-211ENST00000466054 ZBED2Q9BTP6 218 aa12.63□□□□□ -0.39
LRCH3-211ENST00000466054 JPH4Q96JJ6 628 aa12.62□□□□□ -0.39
LRCH3-211ENST00000466054 CRISPLD2Q9H0B8 497 aa12.62□□□□□ -0.39
LRCH3-211ENST00000466054 A0A0G2JS52 829 aa12.61□□□□□ -0.39
LRCH3-211ENST00000466054 PDE4AP27815 886 aa12.61□□□□□ -0.39
LRCH3-211ENST00000466054 ZDHHC16Q969W1 377 aa12.61□□□□□ -0.39
LRCH3-211ENST00000466054 BHMG1C9JSJ3 638 aaPredicted RBP12.6□□□□□ -0.39
LRCH3-211ENST00000466054 EVI5O60447 810 aa12.59□□□□□ -0.39
LRCH3-211ENST00000466054 MAP3K9P80192 1104 aa12.56□□□□□ -0.4
LRCH3-211ENST00000466054 ADAM33Q9BZ11 813 aa12.56□□□□□ -0.4
LRCH3-211ENST00000466054 ANKK1Q8NFD2 765 aa12.55□□□□□ -0.4
LRCH3-211ENST00000466054 NKX1-1Q15270 411 aaPredicted RBP12.54□□□□□ -0.4
LRCH3-211ENST00000466054 ANO8Q9HCE9 1232 aaPredicted RBP12.54□□□□□ -0.4
LRCH3-211ENST00000466054 DDX27Q96GQ7 796 aaKnown RBP12.51□□□□□ -0.41
LRCH3-211ENST00000466054 LARP6Q9BRS8 491 aaKnown RBP12.51□□□□□ -0.41
LRCH3-211ENST00000466054 DNAJC5Q9H3Z4 198 aa12.5□□□□□ -0.41
LRCH3-211ENST00000466054 NCKAP5LQ9HCH0 1330 aa12.5□□□□□ -0.41
LRCH3-211ENST00000466054 PPP1R3GB7ZBB8 358 aa12.49□□□□□ -0.41
LRCH3-211ENST00000466054 RABGEF1Q9UJ41 708 aa12.47□□□□□ -0.41
LRCH3-211ENST00000466054 PROX2Q3B8N5 592 aa12.44□□□□□ -0.42
LRCH3-211ENST00000466054 BCAMP50895 628 aa12.43□□□□□ -0.42
LRCH3-211ENST00000466054 FBXW7Q969H0 707 aa12.43□□□□□ -0.42
LRCH3-211ENST00000466054 Q6ZNB5 142 aa12.42□□□□□ -0.42
LRCH3-211ENST00000466054 TYW1BQ6NUM6 668 aa12.41□□□□□ -0.42
LRCH3-211ENST00000466054 LAPTM4BQ86VI4 370 aa12.41□□□□□ -0.42
LRCH3-211ENST00000466054 PCDHGA10Q9Y5H3 936 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 112 ms