RNA–Protein interactions for RNA: ENST00000465941.1

HOXA9-203, Transcript of homeobox A9, humanhuman

TSL 1 (best)

Gene HOXA9, Length 657 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-203ENST00000465941 CFAP74Q9C0B2 1584 aa28.77■■■□□ 2.2
HOXA9-203ENST00000465941 ARHGAP5Q13017 1502 aa28.76■■■□□ 2.19
HOXA9-203ENST00000465941 NCOA2Q15596 1464 aa28.76■■■□□ 2.19
HOXA9-203ENST00000465941 SUPT6HQ7KZ85 1726 aaKnown RBP28.74■■■□□ 2.19
HOXA9-203ENST00000465941 PREX2Q70Z35 1606 aa28.74■■■□□ 2.19
HOXA9-203ENST00000465941 CDC42BPAQ5VT25 1732 aa28.72■■■□□ 2.19
HOXA9-203ENST00000465941 CDC42BPBQ9Y5S2 1711 aa28.72■■■□□ 2.19
HOXA9-203ENST00000465941 CFDP1Q9UEE9 299 aaPredicted RBP28.71■■■□□ 2.19
HOXA9-203ENST00000465941 ADGRL1O94910 1474 aa28.68■■■□□ 2.18
HOXA9-203ENST00000465941 RAPGEF3O95398 923 aa28.67■■■□□ 2.18
HOXA9-203ENST00000465941 SCAPERQ9BY12 1400 aa28.67■■■□□ 2.18
HOXA9-203ENST00000465941 DENND4BO75064 1496 aaPredicted RBP28.66■■■□□ 2.18
HOXA9-203ENST00000465941 ZNF777Q9ULD5 760 aaPredicted RBP28.63■■■□□ 2.17
HOXA9-203ENST00000465941 ITSN2Q9NZM3 1697 aa28.61■■■□□ 2.17
HOXA9-203ENST00000465941 POGZQ7Z3K3 1410 aa28.58■■■□□ 2.17
HOXA9-203ENST00000465941 MYOM3Q5VTT5 1437 aa28.57■■■□□ 2.16
HOXA9-203ENST00000465941 KIAA1107Q9UPP5 1409 aa28.57■■■□□ 2.16
HOXA9-203ENST00000465941 ABCC1P33527 1531 aa28.57■■■□□ 2.16
HOXA9-203ENST00000465941 FRMPD1Q5SYB0 1578 aa28.57■■■□□ 2.16
HOXA9-203ENST00000465941 SAMD9LQ8IVG5 1584 aa28.57■■■□□ 2.16
HOXA9-203ENST00000465941 PLEKHH2Q8IVE3 1493 aa28.56■■■□□ 2.16
HOXA9-203ENST00000465941 ARHGEF12Q9NZN5 1544 aa28.55■■■□□ 2.16
HOXA9-203ENST00000465941 ZNF644Q9H582 1327 aaPredicted RBP28.55■■■□□ 2.16
HOXA9-203ENST00000465941 RICTORQ6R327 1708 aa28.55■■■□□ 2.16
HOXA9-203ENST00000465941 MIA2Q96PC5 1412 aa28.53■■■□□ 2.16
HOXA9-203ENST00000465941 AFAP1Q8N556 730 aa28.53■■■□□ 2.16
HOXA9-203ENST00000465941 ZNF518AQ6AHZ1 1483 aa28.53■■■□□ 2.16
HOXA9-203ENST00000465941 HNRNPMP52272 730 aaKnown RBP eCLIP28.52■■■□□ 2.16
HOXA9-203ENST00000465941 TRAPPC8Q9Y2L5 1435 aa28.51■■■□□ 2.15
HOXA9-203ENST00000465941 ZMYM4Q5VZL5 1548 aa28.49■■■□□ 2.15
HOXA9-203ENST00000465941 SYCP2Q9BX26 1530 aa28.48■■■□□ 2.15
HOXA9-203ENST00000465941 MAGI2Q86UL8 1455 aa28.47■■■□□ 2.15
HOXA9-203ENST00000465941 PPARGC1BQ86YN6 1023 aaKnown RBP28.47■■■□□ 2.15
HOXA9-203ENST00000465941 CAMSAP2Q08AD1 1489 aa28.46■■■□□ 2.15
HOXA9-203ENST00000465941 MBD5Q9P267 1494 aa28.46■■■□□ 2.15
HOXA9-203ENST00000465941 KDM5CP41229 1560 aa28.45■■■□□ 2.15
HOXA9-203ENST00000465941 RSPH4AQ5TD94 716 aa28.44■■■□□ 2.14
HOXA9-203ENST00000465941 FGD6Q6ZV73 1430 aa28.42■■■□□ 2.14
HOXA9-203ENST00000465941 MLH3Q9UHC1 1453 aa28.4■■■□□ 2.14
HOXA9-203ENST00000465941 YEATS2Q9ULM3 1422 aa28.38■■■□□ 2.13
HOXA9-203ENST00000465941 ZFYVE16Q7Z3T8 1539 aa28.37■■■□□ 2.13
HOXA9-203ENST00000465941 SPAG9O60271 1321 aaKnown RBP28.37■■■□□ 2.13
HOXA9-203ENST00000465941 MYT1LQ9UL68 1186 aa28.36■■■□□ 2.13
HOXA9-203ENST00000465941 TCOF1Q13428 1488 aaKnown RBP28.35■■■□□ 2.13
HOXA9-203ENST00000465941 HECW2Q9P2P5 1572 aa28.35■■■□□ 2.13
HOXA9-203ENST00000465941 PTPN23Q9H3S7 1636 aa28.35■■■□□ 2.13
HOXA9-203ENST00000465941 ARHGEF40Q8TER5 1519 aa28.34■■■□□ 2.13
HOXA9-203ENST00000465941 CCDC141Q6ZP82 1450 aa28.34■■■□□ 2.13
HOXA9-203ENST00000465941 ARHGEF5Q12774 1597 aa28.33■■■□□ 2.13
HOXA9-203ENST00000465941 ATP10AO60312 1499 aa28.3■■■□□ 2.12
HOXA9-203ENST00000465941 RTEL1-TNFRSF6BF6WH68 1400 aa28.29■■■□□ 2.12
HOXA9-203ENST00000465941 TSPY4P0CV99 314 aa28.29■■■□□ 2.12
HOXA9-203ENST00000465941 TSPY10P0CW01 314 aa28.29■■■□□ 2.12
HOXA9-203ENST00000465941 KIDINS220Q9ULH0 1771 aa28.27■■■□□ 2.12
HOXA9-203ENST00000465941 ATP7AQ04656 1500 aa28.26■■■□□ 2.11
HOXA9-203ENST00000465941 INO80Q9ULG1 1556 aaPredicted RBP28.25■■■□□ 2.11
HOXA9-203ENST00000465941 FAM50AQ14320 339 aaKnown RBP28.25■■■□□ 2.11
HOXA9-203ENST00000465941 C9orf84Q5VXU9 1444 aa28.25■■■□□ 2.11
HOXA9-203ENST00000465941 DIP2CQ9Y2E4 1556 aa28.24■■■□□ 2.11
HOXA9-203ENST00000465941 ABCA6Q8N139 1617 aa28.22■■■□□ 2.11
HOXA9-203ENST00000465941 ABCC5O15440 1437 aa28.22■■■□□ 2.11
HOXA9-203ENST00000465941 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.2■■■□□ 2.1
HOXA9-203ENST00000465941 REREQ9P2R6 1566 aa28.2■■■□□ 2.1
HOXA9-203ENST00000465941 ARID4BQ4LE39 1312 aaPredicted RBP28.19■■■□□ 2.1
HOXA9-203ENST00000465941 DAPK1P53355 1430 aa28.19■■■□□ 2.1
HOXA9-203ENST00000465941 MAST1Q9Y2H9 1570 aa28.17■■■□□ 2.1
HOXA9-203ENST00000465941 DNMT1P26358 1616 aaKnown RBP28.17■■■□□ 2.1
HOXA9-203ENST00000465941 RRBP1Q9P2E9 1410 aaKnown RBP28.17■■■□□ 2.1
HOXA9-203ENST00000465941 SHANK2Q9UPX8 1470 aa28.16■■■□□ 2.1
HOXA9-203ENST00000465941 KDM4FA0A1W2PPD8 638 aa28.15■■■□□ 2.1
HOXA9-203ENST00000465941 A2MP01023 1474 aa28.13■■■□□ 2.09
HOXA9-203ENST00000465941 SIGLEC1Q9BZZ2 1709 aa28.12■■■□□ 2.09
HOXA9-203ENST00000465941 AGLP35573 1532 aa28.12■■■□□ 2.09
HOXA9-203ENST00000465941 DHX29Q7Z478 1369 aaKnown RBP28.11■■■□□ 2.09
HOXA9-203ENST00000465941 CROCC2H7BZ55 1655 aa28.1■■■□□ 2.09
HOXA9-203ENST00000465941 ADGBQ8N7X0 1667 aa28.08■■■□□ 2.09
HOXA9-203ENST00000465941 CHIC2Q9UKJ5 165 aa28.07■■■□□ 2.08
HOXA9-203ENST00000465941 PLXNC1O60486 1568 aa28.07■■■□□ 2.08
HOXA9-203ENST00000465941 BCORL1Q5H9F3 1711 aa28.05■■■□□ 2.08
HOXA9-203ENST00000465941 ANKRD30AQ9BXX3 1397 aa28.04■■■□□ 2.08
HOXA9-203ENST00000465941 PTPRKQ15262 1439 aa28.03■■■□□ 2.08
HOXA9-203ENST00000465941 NCOA1Q15788 1441 aa28.03■■■□□ 2.08
HOXA9-203ENST00000465941 MLECQ14165 292 aa28.03■■■□□ 2.08
HOXA9-203ENST00000465941 RRP7BPQ9NSQ0 103 aa28.03■■■□□ 2.08
HOXA9-203ENST00000465941 ADGRL2O95490 1459 aa28.02■■■□□ 2.08
HOXA9-203ENST00000465941 KIF15Q9NS87 1388 aa28.01■■■□□ 2.07
HOXA9-203ENST00000465941 ADAMTSL3P82987 1691 aa28.01■■■□□ 2.07
HOXA9-203ENST00000465941 ITGAEP38570 1179 aa27.99■■■□□ 2.07
HOXA9-203ENST00000465941 DUOX2Q9NRD8 1548 aa27.97■■■□□ 2.07
HOXA9-203ENST00000465941 ROCK1Q13464 1354 aa27.97■■■□□ 2.07
HOXA9-203ENST00000465941 KIF3BO15066 747 aa27.96■■■□□ 2.07
HOXA9-203ENST00000465941 GGT6Q6P531 493 aa27.93■■■□□ 2.06
HOXA9-203ENST00000465941 PPP6R1Q9UPN7 881 aa27.93■■■□□ 2.06
HOXA9-203ENST00000465941 AEBP2Q6ZN18 517 aaPredicted RBP27.92■■■□□ 2.06
HOXA9-203ENST00000465941 ERBINQ96RT1 1412 aa27.92■■■□□ 2.06
HOXA9-203ENST00000465941 MADDQ8WXG6 1647 aa27.91■■■□□ 2.06
HOXA9-203ENST00000465941 EIF2AK4Q9P2K8 1649 aaKnown RBP27.88■■■□□ 2.05
HOXA9-203ENST00000465941 ESF1Q9H501 851 aaKnown RBP27.87■■■□□ 2.05
HOXA9-203ENST00000465941 PTPRMP28827 1452 aa27.87■■■□□ 2.05
HOXA9-203ENST00000465941 ANKRD50Q9ULJ7 1429 aa27.84■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms