RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 CDC42BPAQ5VT25 1732 aa18.35■□□□□ 0.53
CUX1-207ENST00000465461 LRRC9Q6ZRR7 1453 aa18.34■□□□□ 0.53
CUX1-207ENST00000465461 ZNF777Q9ULD5 760 aaPredicted RBP18.34■□□□□ 0.53
CUX1-207ENST00000465461 GPATCH8Q9UKJ3 1502 aaKnown RBP18.33■□□□□ 0.53
CUX1-207ENST00000465461 PREX2Q70Z35 1606 aa18.33■□□□□ 0.52
CUX1-207ENST00000465461 CFAP74Q9C0B2 1584 aa18.33■□□□□ 0.52
CUX1-207ENST00000465461 ADGRL1O94910 1474 aa18.33■□□□□ 0.52
CUX1-207ENST00000465461 CCNB3Q8WWL7 1395 aa18.32■□□□□ 0.52
CUX1-207ENST00000465461 SCAPERQ9BY12 1400 aa18.32■□□□□ 0.52
CUX1-207ENST00000465461 MAP3K1Q13233 1512 aa18.31■□□□□ 0.52
CUX1-207ENST00000465461 DENND4BO75064 1496 aaPredicted RBP18.31■□□□□ 0.52
CUX1-207ENST00000465461 NCOA2Q15596 1464 aa18.31■□□□□ 0.52
CUX1-207ENST00000465461 FRMPD1Q5SYB0 1578 aa18.3■□□□□ 0.52
CUX1-207ENST00000465461 SUPT6HQ7KZ85 1726 aaKnown RBP18.29■□□□□ 0.52
CUX1-207ENST00000465461 CFDP1Q9UEE9 299 aaPredicted RBP18.29■□□□□ 0.52
CUX1-207ENST00000465461 RICTORQ6R327 1708 aa18.26■□□□□ 0.51
CUX1-207ENST00000465461 ZNF644Q9H582 1327 aaPredicted RBP18.26■□□□□ 0.51
CUX1-207ENST00000465461 AFAP1Q8N556 730 aa18.26■□□□□ 0.51
CUX1-207ENST00000465461 ARHGEF12Q9NZN5 1544 aa18.26■□□□□ 0.51
CUX1-207ENST00000465461 PPARGC1BQ86YN6 1023 aaKnown RBP18.25■□□□□ 0.51
CUX1-207ENST00000465461 SAMD9LQ8IVG5 1584 aa18.25■□□□□ 0.51
CUX1-207ENST00000465461 HNRNPMP52272 730 aaKnown RBP eCLIP18.24■□□□□ 0.51
CUX1-207ENST00000465461 POGZQ7Z3K3 1410 aa18.23■□□□□ 0.51
CUX1-207ENST00000465461 ABCC1P33527 1531 aa18.23■□□□□ 0.51
CUX1-207ENST00000465461 TRAPPC8Q9Y2L5 1435 aa18.23■□□□□ 0.51
CUX1-207ENST00000465461 ITSN2Q9NZM3 1697 aa18.21■□□□□ 0.51
CUX1-207ENST00000465461 MYT1LQ9UL68 1186 aa18.2■□□□□ 0.5
CUX1-207ENST00000465461 SYCP2Q9BX26 1530 aa18.19■□□□□ 0.5
CUX1-207ENST00000465461 YEATS2Q9ULM3 1422 aa18.19■□□□□ 0.5
CUX1-207ENST00000465461 ZNF518AQ6AHZ1 1483 aa18.16■□□□□ 0.5
CUX1-207ENST00000465461 ZMYM4Q5VZL5 1548 aa18.16■□□□□ 0.5
CUX1-207ENST00000465461 ZFYVE16Q7Z3T8 1539 aa18.15■□□□□ 0.5
CUX1-207ENST00000465461 MYOM3Q5VTT5 1437 aa18.15■□□□□ 0.5
CUX1-207ENST00000465461 CAMSAP2Q08AD1 1489 aa18.14■□□□□ 0.5
CUX1-207ENST00000465461 KDM4FA0A1W2PPD8 638 aa18.14■□□□□ 0.49
CUX1-207ENST00000465461 KIAA1107Q9UPP5 1409 aa18.14■□□□□ 0.49
CUX1-207ENST00000465461 KDM5CP41229 1560 aa18.13■□□□□ 0.49
CUX1-207ENST00000465461 PLEKHH2Q8IVE3 1493 aa18.13■□□□□ 0.49
CUX1-207ENST00000465461 ARHGEF40Q8TER5 1519 aa18.13■□□□□ 0.49
CUX1-207ENST00000465461 MBD5Q9P267 1494 aa18.12■□□□□ 0.49
CUX1-207ENST00000465461 ARID4BQ4LE39 1312 aaPredicted RBP18.11■□□□□ 0.49
CUX1-207ENST00000465461 MAGI2Q86UL8 1455 aa18.11■□□□□ 0.49
CUX1-207ENST00000465461 HECW2Q9P2P5 1572 aa18.1■□□□□ 0.49
CUX1-207ENST00000465461 SIGLEC1Q9BZZ2 1709 aa18.09■□□□□ 0.49
CUX1-207ENST00000465461 SPAG9O60271 1321 aaKnown RBP18.09■□□□□ 0.49
CUX1-207ENST00000465461 MLH3Q9UHC1 1453 aa18.08■□□□□ 0.49
CUX1-207ENST00000465461 MIA2Q96PC5 1412 aa18.08■□□□□ 0.49
CUX1-207ENST00000465461 KIDINS220Q9ULH0 1771 aa18.07■□□□□ 0.48
CUX1-207ENST00000465461 ABCA6Q8N139 1617 aa18.07■□□□□ 0.48
CUX1-207ENST00000465461 ATP10AO60312 1499 aa18.07■□□□□ 0.48
CUX1-207ENST00000465461 DIP2CQ9Y2E4 1556 aa18.06■□□□□ 0.48
CUX1-207ENST00000465461 MLECQ14165 292 aa18.06■□□□□ 0.48
CUX1-207ENST00000465461 PTPN23Q9H3S7 1636 aa18.05■□□□□ 0.48
CUX1-207ENST00000465461 FGD6Q6ZV73 1430 aa18.05■□□□□ 0.48
CUX1-207ENST00000465461 CCDC141Q6ZP82 1450 aa18.03■□□□□ 0.48
CUX1-207ENST00000465461 C9orf84Q5VXU9 1444 aa18.03■□□□□ 0.48
CUX1-207ENST00000465461 ATP7AQ04656 1500 aa18.03■□□□□ 0.48
CUX1-207ENST00000465461 INO80Q9ULG1 1556 aaPredicted RBP18.01■□□□□ 0.47
CUX1-207ENST00000465461 FAM50AQ14320 339 aaKnown RBP18.01■□□□□ 0.47
CUX1-207ENST00000465461 RSPH4AQ5TD94 716 aa18.01■□□□□ 0.47
CUX1-207ENST00000465461 ARHGEF5Q12774 1597 aa18■□□□□ 0.47
CUX1-207ENST00000465461 TSPY4P0CV99 314 aa18■□□□□ 0.47
CUX1-207ENST00000465461 TSPY10P0CW01 314 aa18■□□□□ 0.47
CUX1-207ENST00000465461 BCORL1Q5H9F3 1711 aa17.99■□□□□ 0.47
CUX1-207ENST00000465461 TCOF1Q13428 1488 aaKnown RBP17.99■□□□□ 0.47
CUX1-207ENST00000465461 ABCC5O15440 1437 aa17.98■□□□□ 0.47
CUX1-207ENST00000465461 RTEL1-TNFRSF6BF6WH68 1400 aa17.96■□□□□ 0.47
CUX1-207ENST00000465461 ADAMTSL3P82987 1691 aa17.96■□□□□ 0.47
CUX1-207ENST00000465461 CHIC2Q9UKJ5 165 aa17.95■□□□□ 0.46
CUX1-207ENST00000465461 A2MP01023 1474 aa17.95■□□□□ 0.46
CUX1-207ENST00000465461 PLPPR3Q6T4P5 718 aa17.94■□□□□ 0.46
CUX1-207ENST00000465461 DAPK1P53355 1430 aa17.94■□□□□ 0.46
CUX1-207ENST00000465461 REREQ9P2R6 1566 aa17.94■□□□□ 0.46
CUX1-207ENST00000465461 MADDQ8WXG6 1647 aa17.94■□□□□ 0.46
CUX1-207ENST00000465461 ADGBQ8N7X0 1667 aa17.93■□□□□ 0.46
CUX1-207ENST00000465461 DNMT1P26358 1616 aaKnown RBP17.92■□□□□ 0.46
CUX1-207ENST00000465461 MAST1Q9Y2H9 1570 aa17.91■□□□□ 0.46
CUX1-207ENST00000465461 AGLP35573 1532 aa17.9■□□□□ 0.46
CUX1-207ENST00000465461 ITGAEP38570 1179 aa17.9■□□□□ 0.46
CUX1-207ENST00000465461 RRP7BPQ9NSQ0 103 aa17.9■□□□□ 0.46
CUX1-207ENST00000465461 DHX29Q7Z478 1369 aaKnown RBP17.9■□□□□ 0.46
CUX1-207ENST00000465461 CROCC2H7BZ55 1655 aa17.9■□□□□ 0.46
CUX1-207ENST00000465461 RIMS1Q86UR5 1692 aaKnown RBP17.9■□□□□ 0.46
CUX1-207ENST00000465461 PLXNC1O60486 1568 aa17.89■□□□□ 0.45
CUX1-207ENST00000465461 GGT6Q6P531 493 aa17.89■□□□□ 0.45
CUX1-207ENST00000465461 PTPRMP28827 1452 aa17.88■□□□□ 0.45
CUX1-207ENST00000465461 KIF3BO15066 747 aa17.87■□□□□ 0.45
CUX1-207ENST00000465461 PTPRKQ15262 1439 aa17.87■□□□□ 0.45
CUX1-207ENST00000465461 FER1L4A9Z1Z3 1794 aa17.86■□□□□ 0.45
CUX1-207ENST00000465461 SHANK2Q9UPX8 1470 aa17.86■□□□□ 0.45
CUX1-207ENST00000465461 CEBPAP49715 358 aaPredicted RBP17.85■□□□□ 0.45
CUX1-207ENST00000465461 KIF15Q9NS87 1388 aa17.83■□□□□ 0.45
CUX1-207ENST00000465461 RRBP1Q9P2E9 1410 aaKnown RBP17.82■□□□□ 0.44
CUX1-207ENST00000465461 ANKRD30AQ9BXX3 1397 aa17.81■□□□□ 0.44
CUX1-207ENST00000465461 ESF1Q9H501 851 aaKnown RBP17.81■□□□□ 0.44
CUX1-207ENST00000465461 NCOA1Q15788 1441 aa17.81■□□□□ 0.44
CUX1-207ENST00000465461 DUOX2Q9NRD8 1548 aa17.79■□□□□ 0.44
CUX1-207ENST00000465461 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.79■□□□□ 0.44
CUX1-207ENST00000465461 ADGRL2O95490 1459 aa17.77■□□□□ 0.44
CUX1-207ENST00000465461 CLTCQ00610 1675 aaKnown RBP17.77■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms