RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 FANCAO15360 1455 aa20.78■□□□□ 0.92
COL28A1-206ENST00000465339 MYO5CQ9NQX4 1742 aa20.78■□□□□ 0.92
COL28A1-206ENST00000465339 DMRT2Q9Y5R5 561 aa20.76■□□□□ 0.91
COL28A1-206ENST00000465339 AKNAQ7Z591 1439 aa20.75■□□□□ 0.91
COL28A1-206ENST00000465339 EFCAB2Q5VUJ9 269 aa20.73■□□□□ 0.91
COL28A1-206ENST00000465339 RAPGEF3O95398 923 aa20.71■□□□□ 0.91
COL28A1-206ENST00000465339 VPS8Q8N3P4 1428 aa20.7■□□□□ 0.9
COL28A1-206ENST00000465339 DENND4BO75064 1496 aaPredicted RBP20.69■□□□□ 0.9
COL28A1-206ENST00000465339 MTUS2Q5JR59 1369 aa20.68■□□□□ 0.9
COL28A1-206ENST00000465339 CDC42BPBQ9Y5S2 1711 aa20.67■□□□□ 0.9
COL28A1-206ENST00000465339 ARHGAP5Q13017 1502 aa20.67■□□□□ 0.9
COL28A1-206ENST00000465339 RICTORQ6R327 1708 aa20.67■□□□□ 0.9
COL28A1-206ENST00000465339 ADGRL1O94910 1474 aa20.66■□□□□ 0.9
COL28A1-206ENST00000465339 PREX2Q70Z35 1606 aa20.65■□□□□ 0.9
COL28A1-206ENST00000465339 FRMPD1Q5SYB0 1578 aa20.65■□□□□ 0.9
COL28A1-206ENST00000465339 SCAPERQ9BY12 1400 aa20.64■□□□□ 0.89
COL28A1-206ENST00000465339 CDC42BPAQ5VT25 1732 aa20.64■□□□□ 0.89
COL28A1-206ENST00000465339 CNKSR2Q8WXI2 1034 aa20.62■□□□□ 0.89
COL28A1-206ENST00000465339 EHBP1L1Q8N3D4 1523 aa20.62■□□□□ 0.89
COL28A1-206ENST00000465339 TIAM1Q13009 1591 aa20.6■□□□□ 0.89
COL28A1-206ENST00000465339 GPATCH8Q9UKJ3 1502 aaKnown RBP20.59■□□□□ 0.89
COL28A1-206ENST00000465339 KDM4FA0A1W2PPD8 638 aa20.59■□□□□ 0.89
COL28A1-206ENST00000465339 CCNB3Q8WWL7 1395 aa20.59■□□□□ 0.89
COL28A1-206ENST00000465339 ZMYM4Q5VZL5 1548 aa20.58■□□□□ 0.89
COL28A1-206ENST00000465339 POGZQ7Z3K3 1410 aa20.58■□□□□ 0.88
COL28A1-206ENST00000465339 MAP3K1Q13233 1512 aa20.58■□□□□ 0.88
COL28A1-206ENST00000465339 MAGI2Q86UL8 1455 aa20.57■□□□□ 0.88
COL28A1-206ENST00000465339 ZNF518AQ6AHZ1 1483 aa20.55■□□□□ 0.88
COL28A1-206ENST00000465339 SUPT6HQ7KZ85 1726 aaKnown RBP20.54■□□□□ 0.88
COL28A1-206ENST00000465339 NCBP3Q53F19 620 aaKnown RBP20.54■□□□□ 0.88
COL28A1-206ENST00000465339 CFDP1Q9UEE9 299 aaPredicted RBP20.54■□□□□ 0.88
COL28A1-206ENST00000465339 ZNF777Q9ULD5 760 aaPredicted RBP20.53■□□□□ 0.88
COL28A1-206ENST00000465339 ABCC1P33527 1531 aa20.53■□□□□ 0.88
COL28A1-206ENST00000465339 LRRC9Q6ZRR7 1453 aa20.52■□□□□ 0.88
COL28A1-206ENST00000465339 APLP2Q06481 763 aa20.52■□□□□ 0.88
COL28A1-206ENST00000465339 ZFYVE16Q7Z3T8 1539 aa20.52■□□□□ 0.87
COL28A1-206ENST00000465339 ARHGEF40Q8TER5 1519 aa20.52■□□□□ 0.87
COL28A1-206ENST00000465339 ITSN2Q9NZM3 1697 aa20.51■□□□□ 0.87
COL28A1-206ENST00000465339 AFAP1Q8N556 730 aa20.51■□□□□ 0.87
COL28A1-206ENST00000465339 NCOA2Q15596 1464 aa20.5■□□□□ 0.87
COL28A1-206ENST00000465339 KDM5CP41229 1560 aa20.49■□□□□ 0.87
COL28A1-206ENST00000465339 SAMD9LQ8IVG5 1584 aa20.49■□□□□ 0.87
COL28A1-206ENST00000465339 PLEKHH2Q8IVE3 1493 aa20.49■□□□□ 0.87
COL28A1-206ENST00000465339 ARHGEF12Q9NZN5 1544 aa20.48■□□□□ 0.87
COL28A1-206ENST00000465339 YEATS2Q9ULM3 1422 aa20.47■□□□□ 0.87
COL28A1-206ENST00000465339 KIAA1107Q9UPP5 1409 aa20.47■□□□□ 0.87
COL28A1-206ENST00000465339 TRAPPC8Q9Y2L5 1435 aa20.46■□□□□ 0.87
COL28A1-206ENST00000465339 KCNA4P22459 653 aa20.46■□□□□ 0.87
COL28A1-206ENST00000465339 KANK4Q5T7N3 995 aaPredicted RBP20.46■□□□□ 0.87
COL28A1-206ENST00000465339 ARID4BQ4LE39 1312 aaPredicted RBP20.46■□□□□ 0.87
COL28A1-206ENST00000465339 MLH3Q9UHC1 1453 aa20.45■□□□□ 0.86
COL28A1-206ENST00000465339 MYT1LQ9UL68 1186 aa20.45■□□□□ 0.86
COL28A1-206ENST00000465339 ATP10AO60312 1499 aa20.44■□□□□ 0.86
COL28A1-206ENST00000465339 HECW2Q9P2P5 1572 aa20.44■□□□□ 0.86
COL28A1-206ENST00000465339 HNRNPMP52272 730 aaKnown RBP eCLIP20.44■□□□□ 0.86
COL28A1-206ENST00000465339 SYCP2Q9BX26 1530 aa20.43■□□□□ 0.86
COL28A1-206ENST00000465339 BCORL1Q5H9F3 1711 aa20.41■□□□□ 0.86
COL28A1-206ENST00000465339 ZNF644Q9H582 1327 aaPredicted RBP20.4■□□□□ 0.86
COL28A1-206ENST00000465339 ADAMTSL3P82987 1691 aa20.39■□□□□ 0.86
COL28A1-206ENST00000465339 C9orf84Q5VXU9 1444 aa20.39■□□□□ 0.85
COL28A1-206ENST00000465339 KIDINS220Q9ULH0 1771 aa20.38■□□□□ 0.85
COL28A1-206ENST00000465339 SPAG9O60271 1321 aaKnown RBP20.37■□□□□ 0.85
COL28A1-206ENST00000465339 DIP2CQ9Y2E4 1556 aa20.37■□□□□ 0.85
COL28A1-206ENST00000465339 RSPH4AQ5TD94 716 aa20.36■□□□□ 0.85
COL28A1-206ENST00000465339 SIGLEC1Q9BZZ2 1709 aa20.36■□□□□ 0.85
COL28A1-206ENST00000465339 ABCA6Q8N139 1617 aa20.35■□□□□ 0.85
COL28A1-206ENST00000465339 MBD5Q9P267 1494 aa20.35■□□□□ 0.85
COL28A1-206ENST00000465339 REREQ9P2R6 1566 aa20.34■□□□□ 0.85
COL28A1-206ENST00000465339 CAMSAP2Q08AD1 1489 aa20.34■□□□□ 0.85
COL28A1-206ENST00000465339 MYOM3Q5VTT5 1437 aa20.34■□□□□ 0.85
COL28A1-206ENST00000465339 MIA2Q96PC5 1412 aa20.33■□□□□ 0.84
COL28A1-206ENST00000465339 ATP7AQ04656 1500 aa20.32■□□□□ 0.84
COL28A1-206ENST00000465339 MADDQ8WXG6 1647 aa20.31■□□□□ 0.84
COL28A1-206ENST00000465339 INO80Q9ULG1 1556 aaPredicted RBP20.3■□□□□ 0.84
COL28A1-206ENST00000465339 MLECQ14165 292 aa20.29■□□□□ 0.84
COL28A1-206ENST00000465339 RTEL1-TNFRSF6BF6WH68 1400 aa20.28■□□□□ 0.84
COL28A1-206ENST00000465339 AGLP35573 1532 aa20.28■□□□□ 0.84
COL28A1-206ENST00000465339 PTPRMP28827 1452 aa20.28■□□□□ 0.84
COL28A1-206ENST00000465339 CCDC141Q6ZP82 1450 aa20.28■□□□□ 0.84
COL28A1-206ENST00000465339 ARHGEF5Q12774 1597 aa20.28■□□□□ 0.84
COL28A1-206ENST00000465339 NPM3O75607 178 aaKnown RBP20.26■□□□□ 0.83
COL28A1-206ENST00000465339 TSPY4P0CV99 314 aa20.26■□□□□ 0.83
COL28A1-206ENST00000465339 TSPY10P0CW01 314 aa20.26■□□□□ 0.83
COL28A1-206ENST00000465339 RNF216Q9NWF9 866 aaPredicted RBP20.26■□□□□ 0.83
COL28A1-206ENST00000465339 RIMS1Q86UR5 1692 aaKnown RBP20.26■□□□□ 0.83
COL28A1-206ENST00000465339 FER1L4A9Z1Z3 1794 aa20.25■□□□□ 0.83
COL28A1-206ENST00000465339 ADGBQ8N7X0 1667 aa20.25■□□□□ 0.83
COL28A1-206ENST00000465339 HOXD11P31277 338 aaPredicted RBP20.24■□□□□ 0.83
COL28A1-206ENST00000465339 A2MP01023 1474 aa20.23■□□□□ 0.83
COL28A1-206ENST00000465339 PTPN23Q9H3S7 1636 aa20.2■□□□□ 0.82
COL28A1-206ENST00000465339 FGD6Q6ZV73 1430 aa20.19■□□□□ 0.82
COL28A1-206ENST00000465339 PLXNC1O60486 1568 aa20.19■□□□□ 0.82
COL28A1-206ENST00000465339 MAST1Q9Y2H9 1570 aa20.17■□□□□ 0.82
COL28A1-206ENST00000465339 ESF1Q9H501 851 aaKnown RBP20.17■□□□□ 0.82
COL28A1-206ENST00000465339 DHX29Q7Z478 1369 aaKnown RBP20.17■□□□□ 0.82
COL28A1-206ENST00000465339 TCOF1Q13428 1488 aaKnown RBP20.16■□□□□ 0.82
COL28A1-206ENST00000465339 CNTLNQ9NXG0 1405 aa20.12■□□□□ 0.81
COL28A1-206ENST00000465339 DNMT1P26358 1616 aaKnown RBP20.11■□□□□ 0.81
COL28A1-206ENST00000465339 ABCC5O15440 1437 aa20.1■□□□□ 0.81
COL28A1-206ENST00000465339 CROCC2H7BZ55 1655 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms