RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 EFCAB2Q5VUJ9 269 aa28.6■■■□□ 2.17
COL7A1-205ENST00000465238 CLIP1P30622 1438 aa28.6■■■□□ 2.17
COL7A1-205ENST00000465238 MADDQ8WXG6 1647 aa28.59■■■□□ 2.17
COL7A1-205ENST00000465238 POGZQ7Z3K3 1410 aa28.59■■■□□ 2.17
COL7A1-205ENST00000465238 YEATS2Q9ULM3 1422 aa28.56■■■□□ 2.16
COL7A1-205ENST00000465238 CASKIN1Q8WXD9 1431 aa28.55■■■□□ 2.16
COL7A1-205ENST00000465238 CCDC18Q5T9S5 1454 aa28.53■■■□□ 2.16
COL7A1-205ENST00000465238 PCF11O94913 1555 aaKnown RBP28.53■■■□□ 2.16
COL7A1-205ENST00000465238 LOC105371045A0A1W2PR82 267 aa28.51■■■□□ 2.15
COL7A1-205ENST00000465238 ARHGAP5Q13017 1502 aa28.5■■■□□ 2.15
COL7A1-205ENST00000465238 RIMS1Q86UR5 1692 aaKnown RBP28.49■■■□□ 2.15
COL7A1-205ENST00000465238 SIGLEC1Q9BZZ2 1709 aa28.47■■■□□ 2.15
COL7A1-205ENST00000465238 ZNF518AQ6AHZ1 1483 aa28.46■■■□□ 2.15
COL7A1-205ENST00000465238 FYCO1Q9BQS8 1478 aa28.45■■■□□ 2.14
COL7A1-205ENST00000465238 ATP10AO60312 1499 aa28.44■■■□□ 2.14
COL7A1-205ENST00000465238 CDC42BPBQ9Y5S2 1711 aa28.43■■■□□ 2.14
COL7A1-205ENST00000465238 ILDR1Q86SU0 546 aaPredicted RBP28.42■■■□□ 2.14
COL7A1-205ENST00000465238 C9orf84Q5VXU9 1444 aa28.41■■■□□ 2.14
COL7A1-205ENST00000465238 KDM5CP41229 1560 aa28.41■■■□□ 2.14
COL7A1-205ENST00000465238 PREX2Q70Z35 1606 aa28.4■■■□□ 2.14
COL7A1-205ENST00000465238 MLECQ14165 292 aa28.37■■■□□ 2.13
COL7A1-205ENST00000465238 AFAP1Q8N556 730 aa28.37■■■□□ 2.13
COL7A1-205ENST00000465238 FER1L4A9Z1Z3 1794 aa28.37■■■□□ 2.13
COL7A1-205ENST00000465238 LMTK3Q96Q04 1460 aa28.36■■■□□ 2.13
COL7A1-205ENST00000465238 ARHGEF12Q9NZN5 1544 aa28.33■■■□□ 2.13
COL7A1-205ENST00000465238 CDC42BPAQ5VT25 1732 aa28.32■■■□□ 2.12
COL7A1-205ENST00000465238 ABCC1P33527 1531 aa28.32■■■□□ 2.12
COL7A1-205ENST00000465238 CEP162Q5TB80 1403 aa28.31■■■□□ 2.12
COL7A1-205ENST00000465238 MLH3Q9UHC1 1453 aa28.3■■■□□ 2.12
COL7A1-205ENST00000465238 MYT1LQ9UL68 1186 aa28.3■■■□□ 2.12
COL7A1-205ENST00000465238 ITSN2Q9NZM3 1697 aa28.29■■■□□ 2.12
COL7A1-205ENST00000465238 DIP2CQ9Y2E4 1556 aa28.28■■■□□ 2.12
COL7A1-205ENST00000465238 PLPPR3Q6T4P5 718 aa28.28■■■□□ 2.12
COL7A1-205ENST00000465238 REREQ9P2R6 1566 aa28.27■■■□□ 2.12
COL7A1-205ENST00000465238 TRAPPC8Q9Y2L5 1435 aa28.26■■■□□ 2.12
COL7A1-205ENST00000465238 ABCA6Q8N139 1617 aa28.24■■■□□ 2.11
COL7A1-205ENST00000465238 GPATCH8Q9UKJ3 1502 aaKnown RBP28.21■■■□□ 2.11
COL7A1-205ENST00000465238 HSPA2P54652 639 aa28.18■■■□□ 2.1
COL7A1-205ENST00000465238 ZNF777Q9ULD5 760 aaPredicted RBP28.18■■■□□ 2.1
COL7A1-205ENST00000465238 SAMD9LQ8IVG5 1584 aa28.18■■■□□ 2.1
COL7A1-205ENST00000465238 KIDINS220Q9ULH0 1771 aa28.18■■■□□ 2.1
COL7A1-205ENST00000465238 AGLP35573 1532 aa28.18■■■□□ 2.1
COL7A1-205ENST00000465238 MTUS2Q5JR59 1369 aa28.16■■■□□ 2.1
COL7A1-205ENST00000465238 PREX1Q8TCU6 1659 aa28.13■■■□□ 2.09
COL7A1-205ENST00000465238 SYCP2Q9BX26 1530 aa28.13■■■□□ 2.09
COL7A1-205ENST00000465238 CCNB3Q8WWL7 1395 aa28.13■■■□□ 2.09
COL7A1-205ENST00000465238 CEBPAP49715 358 aaPredicted RBP28.12■■■□□ 2.09
COL7A1-205ENST00000465238 CFDP1Q9UEE9 299 aaPredicted RBP28.12■■■□□ 2.09
COL7A1-205ENST00000465238 PLEKHH2Q8IVE3 1493 aa28.12■■■□□ 2.09
COL7A1-205ENST00000465238 KIAA1107Q9UPP5 1409 aa28.11■■■□□ 2.09
COL7A1-205ENST00000465238 SETD1BQ9UPS6 1966 aaKnown RBP28.09■■■□□ 2.09
COL7A1-205ENST00000465238 HNRNPMP52272 730 aaKnown RBP eCLIP28.08■■■□□ 2.09
COL7A1-205ENST00000465238 FBXO41Q8TF61 875 aa28.08■■■□□ 2.09
COL7A1-205ENST00000465238 SPAG9O60271 1321 aaKnown RBP28.08■■■□□ 2.09
COL7A1-205ENST00000465238 EHBP1L1Q8N3D4 1523 aa28.08■■■□□ 2.08
COL7A1-205ENST00000465238 ESF1Q9H501 851 aaKnown RBP28.07■■■□□ 2.08
COL7A1-205ENST00000465238 C3P01024 1663 aa28.03■■■□□ 2.08
COL7A1-205ENST00000465238 ATP7AQ04656 1500 aa28.02■■■□□ 2.08
COL7A1-205ENST00000465238 UHRF1BP1Q6BDS2 1440 aa28.02■■■□□ 2.08
COL7A1-205ENST00000465238 TIAM1Q13009 1591 aa28.02■■■□□ 2.08
COL7A1-205ENST00000465238 CNTLNQ9NXG0 1405 aa28.01■■■□□ 2.08
COL7A1-205ENST00000465238 INO80Q9ULG1 1556 aaPredicted RBP28.01■■■□□ 2.07
COL7A1-205ENST00000465238 SUPT6HQ7KZ85 1726 aaKnown RBP27.96■■■□□ 2.07
COL7A1-205ENST00000465238 VPS8Q8N3P4 1428 aa27.96■■■□□ 2.07
COL7A1-205ENST00000465238 PLXNC1O60486 1568 aa27.94■■■□□ 2.06
COL7A1-205ENST00000465238 A2MP01023 1474 aa27.94■■■□□ 2.06
COL7A1-205ENST00000465238 MROH2AA6NES4 1674 aa27.94■■■□□ 2.06
COL7A1-205ENST00000465238 ZNF644Q9H582 1327 aaPredicted RBP27.93■■■□□ 2.06
COL7A1-205ENST00000465238 MBD5Q9P267 1494 aa27.91■■■□□ 2.06
COL7A1-205ENST00000465238 DMRT2Q9Y5R5 561 aa27.9■■■□□ 2.06
COL7A1-205ENST00000465238 STRCQ7RTU9 1775 aa27.9■■■□□ 2.06
COL7A1-205ENST00000465238 ADGBQ8N7X0 1667 aa27.9■■■□□ 2.06
COL7A1-205ENST00000465238 NCOA2Q15596 1464 aa27.89■■■□□ 2.05
COL7A1-205ENST00000465238 RTEL1-TNFRSF6BF6WH68 1400 aa27.86■■■□□ 2.05
COL7A1-205ENST00000465238 NPATQ14207 1427 aa27.86■■■□□ 2.05
COL7A1-205ENST00000465238 ZMYM3Q14202 1370 aa27.86■■■□□ 2.05
COL7A1-205ENST00000465238 CERKQ8TCT0 537 aa27.84■■■□□ 2.05
COL7A1-205ENST00000465238 CLTCQ00610 1675 aaKnown RBP27.83■■■□□ 2.05
COL7A1-205ENST00000465238 GGT6Q6P531 493 aa27.81■■■□□ 2.04
COL7A1-205ENST00000465238 PPP6R1Q9UPN7 881 aa27.81■■■□□ 2.04
COL7A1-205ENST00000465238 CAMSAP2Q08AD1 1489 aa27.81■■■□□ 2.04
COL7A1-205ENST00000465238 RSPH4AQ5TD94 716 aa27.8■■■□□ 2.04
COL7A1-205ENST00000465238 CCDC141Q6ZP82 1450 aa27.8■■■□□ 2.04
COL7A1-205ENST00000465238 PTPRTO14522 1441 aa27.77■■■□□ 2.04
COL7A1-205ENST00000465238 LRRC9Q6ZRR7 1453 aa27.76■■■□□ 2.04
COL7A1-205ENST00000465238 DHX29Q7Z478 1369 aaKnown RBP27.76■■■□□ 2.03
COL7A1-205ENST00000465238 APLP2Q06481 763 aa27.75■■■□□ 2.03
COL7A1-205ENST00000465238 NCOA1Q15788 1441 aa27.74■■■□□ 2.03
COL7A1-205ENST00000465238 ARHGEF5Q12774 1597 aa27.73■■■□□ 2.03
COL7A1-205ENST00000465238 MAP3K1Q13233 1512 aa27.72■■■□□ 2.03
COL7A1-205ENST00000465238 PTPRKQ15262 1439 aa27.72■■■□□ 2.03
COL7A1-205ENST00000465238 CAMSAP1Q5T5Y3 1602 aa27.7■■■□□ 2.02
COL7A1-205ENST00000465238 MYO3AQ8NEV4 1616 aa27.69■■■□□ 2.02
COL7A1-205ENST00000465238 ZNF142P52746 1687 aaPredicted RBP27.68■■■□□ 2.02
COL7A1-205ENST00000465238 TSPY4P0CV99 314 aa27.67■■■□□ 2.02
COL7A1-205ENST00000465238 TSPY10P0CW01 314 aa27.67■■■□□ 2.02
COL7A1-205ENST00000465238 KIF3BO15066 747 aa27.66■■■□□ 2.02
COL7A1-205ENST00000465238 FAM135AQ9P2D6 1515 aa27.65■■■□□ 2.02
COL7A1-205ENST00000465238 CEP170BQ9Y4F5 1589 aaPredicted RBP27.65■■■□□ 2.02
COL7A1-205ENST00000465238 KANK4Q5T7N3 995 aaPredicted RBP27.63■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms