RNA–Protein interactions for RNA: ENST00000465036.1

UBR4-209, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 392 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-209ENST00000465036 ZSWIM6Q9HCJ5 1215 aa14.16□□□□□ -0.14
UBR4-209ENST00000465036 HS3ST6Q96QI5 342 aa14.14□□□□□ -0.15
UBR4-209ENST00000465036 FAM205CA6NFA0 338 aa14.12□□□□□ -0.15
UBR4-209ENST00000465036 POTEB3A0JP26 581 aa14.11□□□□□ -0.15
UBR4-209ENST00000465036 POTEBQ6S5H4 581 aa14.11□□□□□ -0.15
UBR4-209ENST00000465036 KIF3CO14782 793 aa14.05□□□□□ -0.16
UBR4-209ENST00000465036 SPNS2Q8IVW8 549 aa14.05□□□□□ -0.16
UBR4-209ENST00000465036 HS6ST3Q8IZP7 471 aa14.05□□□□□ -0.16
UBR4-209ENST00000465036 GPR153Q6NV75 609 aa14.04□□□□□ -0.16
UBR4-209ENST00000465036 KRTAP3-3Q9BYR6 98 aa14.03□□□□□ -0.16
UBR4-209ENST00000465036 KRTAP3-2Q9BYR7 98 aa14.03□□□□□ -0.16
UBR4-209ENST00000465036 ERBB3P21860 1342 aa14.02□□□□□ -0.17
UBR4-209ENST00000465036 MMRN1Q13201 1228 aa13.99□□□□□ -0.17
UBR4-209ENST00000465036 C2orf72A6NCS6 295 aa13.98□□□□□ -0.17
UBR4-209ENST00000465036 DNAJC5Q9H3Z4 198 aa13.98□□□□□ -0.17
UBR4-209ENST00000465036 PPP1R37O75864 691 aa13.94□□□□□ -0.18
UBR4-209ENST00000465036 SLC34A2O95436 690 aa13.93□□□□□ -0.18
UBR4-209ENST00000465036 VARS2Q5ST30 1063 aaKnown RBP13.92□□□□□ -0.18
UBR4-209ENST00000465036 TMC2Q8TDI7 906 aa13.92□□□□□ -0.18
UBR4-209ENST00000465036 ARSIQ5FYB1 569 aa13.91□□□□□ -0.18
UBR4-209ENST00000465036 ZNF687Q8N1G0 1237 aa13.9□□□□□ -0.18
UBR4-209ENST00000465036 CHGAP10645 457 aaKnown RBP13.89□□□□□ -0.19
UBR4-209ENST00000465036 RYDENQ9NUL5 291 aaKnown RBP13.85□□□□□ -0.19
UBR4-209ENST00000465036 ZNF316A6NFI3 1004 aaPredicted RBP13.84□□□□□ -0.19
UBR4-209ENST00000465036 KHSRPQ92945 711 aaKnown RBP eCLIP13.81□□□□□ -0.24e-7■□□□□ 9.3
UBR4-209ENST00000465036 PCDHGA4Q9Y5G9 962 aa13.81□□□□□ -0.2
UBR4-209ENST00000465036 FOXK1P85037 733 aa13.8□□□□□ -0.2
UBR4-209ENST00000465036 NKX1-1Q15270 411 aaPredicted RBP13.8□□□□□ -0.2
UBR4-209ENST00000465036 GPHNQ9NQX3 736 aaPredicted RBP13.8□□□□□ -0.2
UBR4-209ENST00000465036 NUDT7P0C024 238 aa13.75□□□□□ -0.21
UBR4-209ENST00000465036 PTCD2Q8WV60 388 aaKnown RBP13.75□□□□□ -0.21
UBR4-209ENST00000465036 KDM4FA0A1W2PPD8 638 aa13.71□□□□□ -0.21
UBR4-209ENST00000465036 PTGER2P43116 358 aa13.71□□□□□ -0.21
UBR4-209ENST00000465036 PLPP6Q8IY26 295 aa13.71□□□□□ -0.21
UBR4-209ENST00000465036 PBX2P40425 430 aa13.7□□□□□ -0.22
UBR4-209ENST00000465036 LHX6Q9UPM6 363 aa13.7□□□□□ -0.22
UBR4-209ENST00000465036 PSDA5PKW4 1024 aaPredicted RBP13.68□□□□□ -0.22
UBR4-209ENST00000465036 DSG2Q14126 1118 aa13.68□□□□□ -0.22
UBR4-209ENST00000465036 CRISPLD2Q9H0B8 497 aa13.65□□□□□ -0.22
UBR4-209ENST00000465036 LSM11P83369 360 aaKnown RBP eCLIP13.64□□□□□ -0.23
UBR4-209ENST00000465036 GTPBP6O43824 516 aaPredicted RBP13.63□□□□□ -0.23
UBR4-209ENST00000465036 TBC1D12O60347 775 aa13.63□□□□□ -0.23
UBR4-209ENST00000465036 MYT1LQ9UL68 1186 aa13.63□□□□□ -0.23
UBR4-209ENST00000465036 RNF166Q96A37 237 aaPredicted RBP13.62□□□□□ -0.23
UBR4-209ENST00000465036 POTEEQ6S8J3 1075 aa13.59□□□□□ -0.23
UBR4-209ENST00000465036 ANKRD13DQ6ZTN6 518 aa13.59□□□□□ -0.23
UBR4-209ENST00000465036 PDE4AP27815 886 aa13.57□□□□□ -0.24
UBR4-209ENST00000465036 OXER1Q8TDS5 423 aa13.56□□□□□ -0.24
UBR4-209ENST00000465036 ARHGAP33O14559 1287 aa13.54□□□□□ -0.24
UBR4-209ENST00000465036 PPP1R15BQ5SWA1 713 aa13.54□□□□□ -0.24
UBR4-209ENST00000465036 NCKAP5LQ9HCH0 1330 aa13.54□□□□□ -0.24
UBR4-209ENST00000465036 AXIN2Q9Y2T1 843 aa13.51□□□□□ -0.25
UBR4-209ENST00000465036 PPP4R3BQ5MIZ7 849 aa13.5□□□□□ -0.25
UBR4-209ENST00000465036 DCAF8L2P0C7V8 631 aa13.49□□□□□ -0.25
UBR4-209ENST00000465036 TK2O00142 265 aa13.47□□□□□ -0.25
UBR4-209ENST00000465036 MFSD10Q14728 455 aa13.47□□□□□ -0.25
UBR4-209ENST00000465036 ADGRD1Q6QNK2 874 aa13.44□□□□□ -0.26
UBR4-209ENST00000465036 DDX27Q96GQ7 796 aaKnown RBP13.44□□□□□ -0.26
UBR4-209ENST00000465036 UPF1Q92900 1129 aaKnown RBP eCLIP13.43□□□□□ -0.26
UBR4-209ENST00000465036 LARP6Q9BRS8 491 aaKnown RBP13.43□□□□□ -0.26
UBR4-209ENST00000465036 ANO8Q9HCE9 1232 aaPredicted RBP13.43□□□□□ -0.26
UBR4-209ENST00000465036 HRO43593 1189 aa13.38□□□□□ -0.27
UBR4-209ENST00000465036 PSEN2P49810 448 aa13.38□□□□□ -0.27
UBR4-209ENST00000465036 DMRTA1Q5VZB9 504 aa13.38□□□□□ -0.27
UBR4-209ENST00000465036 KCNH8Q96L42 1107 aa13.38□□□□□ -0.27
UBR4-209ENST00000465036 FOSBP53539 338 aa13.36□□□□□ -0.27
UBR4-209ENST00000465036 BBXQ8WY36 941 aaPredicted RBP13.36□□□□□ -0.27
UBR4-209ENST00000465036 BCL2L12Q9HB09 334 aa13.36□□□□□ -0.27
UBR4-209ENST00000465036 ZNF454Q8N9F8 522 aa13.35□□□□□ -0.27
UBR4-209ENST00000465036 EVI5O60447 810 aa13.34□□□□□ -0.27
UBR4-209ENST00000465036 CADPS2Q86UW7 1296 aa13.33□□□□□ -0.28
UBR4-209ENST00000465036 JPH4Q96JJ6 628 aa13.33□□□□□ -0.28
UBR4-209ENST00000465036 SLC4A5Q9BY07 1137 aa13.33□□□□□ -0.28
UBR4-209ENST00000465036 KCNK17Q96T54 332 aa13.32□□□□□ -0.28
UBR4-209ENST00000465036 MAP3K9P80192 1104 aa13.31□□□□□ -0.28
UBR4-209ENST00000465036 EMILIN3Q9NT22 766 aa13.3□□□□□ -0.28
UBR4-209ENST00000465036 HCSTQ9UBK5 93 aa13.3□□□□□ -0.28
UBR4-209ENST00000465036 AMER1Q5JTC6 1135 aaPredicted RBP13.29□□□□□ -0.28
UBR4-209ENST00000465036 VPS9D1Q9Y2B5 631 aa13.28□□□□□ -0.28
UBR4-209ENST00000465036 CAMK2BQ13554 666 aa13.27□□□□□ -0.29
UBR4-209ENST00000465036 PTPREP23469 700 aa13.26□□□□□ -0.29
UBR4-209ENST00000465036 ZDHHC16Q969W1 377 aa13.26□□□□□ -0.29
UBR4-209ENST00000465036 STAC3Q96MF2 364 aa13.23□□□□□ -0.29
UBR4-209ENST00000465036 ADAM33Q9BZ11 813 aa13.21□□□□□ -0.29
UBR4-209ENST00000465036 ZBED2Q9BTP6 218 aa13.2□□□□□ -0.3
UBR4-209ENST00000465036 BHMG1C9JSJ3 638 aaPredicted RBP13.19□□□□□ -0.3
UBR4-209ENST00000465036 SPRYD3Q8NCJ5 442 aa13.18□□□□□ -0.3
UBR4-209ENST00000465036 FBXW7Q969H0 707 aa13.18□□□□□ -0.3
UBR4-209ENST00000465036 PCDHGA10Q9Y5H3 936 aa13.18□□□□□ -0.3
UBR4-209ENST00000465036 PHF14O94880 888 aa13.17□□□□□ -0.3
UBR4-209ENST00000465036 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.17□□□□□ -0.3
UBR4-209ENST00000465036 TYW1BQ6NUM6 668 aa13.14□□□□□ -0.31
UBR4-209ENST00000465036 KCTD12Q96CX2 325 aaKnown RBP13.14□□□□□ -0.31
UBR4-209ENST00000465036 PPP1R3GB7ZBB8 358 aa13.13□□□□□ -0.31
UBR4-209ENST00000465036 RTN4Q9NQC3 1192 aaKnown RBP13.13□□□□□ -0.31
UBR4-209ENST00000465036 EPAS1Q99814 870 aa13.12□□□□□ -0.31
UBR4-209ENST00000465036 PLA2G2EQ9NZK7 142 aa13.11□□□□□ -0.31
UBR4-209ENST00000465036 DPYSL4O14531 572 aa13.09□□□□□ -0.31
UBR4-209ENST00000465036 NBPF3Q9H094 633 aa13.09□□□□□ -0.31
UBR4-209ENST00000465036 MRPL50Q8N5N7 158 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms