RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.99□□□□□ -0.01
PTCD3-205ENST00000464541 NCKAP5LQ9HCH0 1330 aa14.97□□□□□ -0.01
PTCD3-205ENST00000464541 TMC2Q8TDI7 906 aa14.97□□□□□ -0.01
PTCD3-205ENST00000464541 SCUBE2Q9NQ36 999 aa14.97□□□□□ -0.01
PTCD3-205ENST00000464541 GPHNQ9NQX3 736 aaPredicted RBP14.97□□□□□ -0.01
PTCD3-205ENST00000464541 KDM2AQ9Y2K7 1162 aa14.97□□□□□ -0.01
PTCD3-205ENST00000464541 POTEJP0CG39 1038 aa14.96□□□□□ -0.01
PTCD3-205ENST00000464541 MFSD10Q14728 455 aa14.94□□□□□ -0.02
PTCD3-205ENST00000464541 WDR70Q9NW82 654 aa14.94□□□□□ -0.02
PTCD3-205ENST00000464541 KIF3CO14782 793 aa14.93□□□□□ -0.02
PTCD3-205ENST00000464541 LARP6Q9BRS8 491 aaKnown RBP14.92□□□□□ -0.02
PTCD3-205ENST00000464541 DDX27Q96GQ7 796 aaKnown RBP14.91□□□□□ -0.02
PTCD3-205ENST00000464541 LHX8Q68G74 356 aa14.9□□□□□ -0.02
PTCD3-205ENST00000464541 TMEM92Q6UXU6 159 aa14.9□□□□□ -0.02
PTCD3-205ENST00000464541 C2orf72A6NCS6 295 aa14.89□□□□□ -0.03
PTCD3-205ENST00000464541 FOXK1P85037 733 aa14.88□□□□□ -0.03
PTCD3-205ENST00000464541 PPP1R15BQ5SWA1 713 aa14.85□□□□□ -0.03
PTCD3-205ENST00000464541 DSG2Q14126 1118 aa14.83□□□□□ -0.04
PTCD3-205ENST00000464541 P3H3Q8IVL6 736 aa14.81□□□□□ -0.04
PTCD3-205ENST00000464541 SLAIN1Q8ND83 568 aa14.81□□□□□ -0.04
PTCD3-205ENST00000464541 E2F4Q16254 413 aa14.79□□□□□ -0.04
PTCD3-205ENST00000464541 PLPP6Q8IY26 295 aa14.79□□□□□ -0.04
PTCD3-205ENST00000464541 CAMK2BQ13554 666 aa14.78□□□□□ -0.04
PTCD3-205ENST00000464541 OTUD5Q96G74 571 aa14.78□□□□□ -0.04
PTCD3-205ENST00000464541 ARIH1Q9Y4X5 557 aaPredicted RBP14.71□□□□□ -0.05
PTCD3-205ENST00000464541 SLC34A2O95436 690 aa14.7□□□□□ -0.06
PTCD3-205ENST00000464541 KCNV2Q8TDN2 545 aa14.68□□□□□ -0.06
PTCD3-205ENST00000464541 ARHGEF1Q92888 912 aaKnown RBP14.68□□□□□ -0.06
PTCD3-205ENST00000464541 SNPHO15079 494 aa14.67□□□□□ -0.06
PTCD3-205ENST00000464541 DOK7Q18PE1 504 aa14.66□□□□□ -0.06
PTCD3-205ENST00000464541 EMILIN3Q9NT22 766 aa14.63□□□□□ -0.07
PTCD3-205ENST00000464541 OXER1Q8TDS5 423 aa14.62□□□□□ -0.07
PTCD3-205ENST00000464541 PTCD2Q8WV60 388 aaKnown RBP14.62□□□□□ -0.07
PTCD3-205ENST00000464541 RIMBP2O15034 1052 aa14.61□□□□□ -0.07
PTCD3-205ENST00000464541 TBC1D12O60347 775 aa14.6□□□□□ -0.07
PTCD3-205ENST00000464541 HOXB3P14651 431 aaPredicted RBP14.6□□□□□ -0.07
PTCD3-205ENST00000464541 ZSWIM6Q9HCJ5 1215 aa14.6□□□□□ -0.07
PTCD3-205ENST00000464541 MAP3K9P80192 1104 aa14.55□□□□□ -0.08
PTCD3-205ENST00000464541 SPDYE16A6NNV3 312 aaPredicted RBP14.54□□□□□ -0.08
PTCD3-205ENST00000464541 DPYSL4O14531 572 aa14.54□□□□□ -0.08
PTCD3-205ENST00000464541 ZNF710Q8N1W2 664 aa14.54□□□□□ -0.08
PTCD3-205ENST00000464541 UPF1Q92900 1129 aaKnown RBP eCLIP14.54□□□□□ -0.08
PTCD3-205ENST00000464541 PCDHGA4Q9Y5G9 962 aa14.53□□□□□ -0.08
PTCD3-205ENST00000464541 NBR1Q14596 966 aa14.52□□□□□ -0.09
PTCD3-205ENST00000464541 BCANQ96GW7 911 aa14.52□□□□□ -0.09
PTCD3-205ENST00000464541 ZNF316A6NFI3 1004 aaPredicted RBP14.51□□□□□ -0.09
PTCD3-205ENST00000464541 PDIA6Q15084 440 aa14.51□□□□□ -0.09
PTCD3-205ENST00000464541 GPR153Q6NV75 609 aa14.46□□□□□ -0.09
PTCD3-205ENST00000464541 EVI5O60447 810 aa14.44□□□□□ -0.1
PTCD3-205ENST00000464541 HOXB1P14653 301 aaPredicted RBP14.43□□□□□ -0.1
PTCD3-205ENST00000464541 ANO8Q9HCE9 1232 aaPredicted RBP14.43□□□□□ -0.1
PTCD3-205ENST00000464541 KDM4FA0A1W2PPD8 638 aa14.42□□□□□ -0.1
PTCD3-205ENST00000464541 ARSIQ5FYB1 569 aa14.42□□□□□ -0.1
PTCD3-205ENST00000464541 PTGER2P43116 358 aa14.4□□□□□ -0.1
PTCD3-205ENST00000464541 TESPA1A2RU30 521 aaPredicted RBP14.38□□□□□ -0.11
PTCD3-205ENST00000464541 SEMA3EO15041 775 aa14.37□□□□□ -0.11
PTCD3-205ENST00000464541 NUDT7P0C024 238 aa14.36□□□□□ -0.11
PTCD3-205ENST00000464541 ST18O60284 1047 aa14.35□□□□□ -0.11
PTCD3-205ENST00000464541 SMYD5Q6GMV2 418 aa14.35□□□□□ -0.11
PTCD3-205ENST00000464541 TULP1O00294 542 aaPredicted RBP14.34□□□□□ -0.11
PTCD3-205ENST00000464541 KHSRPQ92945 711 aaKnown RBP eCLIP14.34□□□□□ -0.114e-9■■■□□ 16.8
PTCD3-205ENST00000464541 PSDA5PKW4 1024 aaPredicted RBP14.32□□□□□ -0.12
PTCD3-205ENST00000464541 FAM163AQ96GL9 167 aaPredicted RBP14.31□□□□□ -0.12
PTCD3-205ENST00000464541 PHF14O94880 888 aa14.29□□□□□ -0.12
PTCD3-205ENST00000464541 JPH4Q96JJ6 628 aa14.29□□□□□ -0.12
PTCD3-205ENST00000464541 EPAS1Q99814 870 aa14.28□□□□□ -0.12
PTCD3-205ENST00000464541 MLLT3P42568 568 aaPredicted RBP14.27□□□□□ -0.13
PTCD3-205ENST00000464541 LHX6Q9UPM6 363 aa14.26□□□□□ -0.13
PTCD3-205ENST00000464541 FOSBP53539 338 aa14.25□□□□□ -0.13
PTCD3-205ENST00000464541 DDX12PQ92771 950 aa14.25□□□□□ -0.13
PTCD3-205ENST00000464541 GRXCR2A6NFK2 248 aa14.24□□□□□ -0.13
PTCD3-205ENST00000464541 FBXW7Q969H0 707 aa14.24□□□□□ -0.13
PTCD3-205ENST00000464541 EMP3P54852 163 aa14.23□□□□□ -0.13
PTCD3-205ENST00000464541 LCE2DQ5TA82 110 aaPredicted RBP14.22□□□□□ -0.13
PTCD3-205ENST00000464541 TYW1BQ6NUM6 668 aa14.22□□□□□ -0.13
PTCD3-205ENST00000464541 PCDHGA10Q9Y5H3 936 aa14.22□□□□□ -0.13
PTCD3-205ENST00000464541 PPP4R3BQ5MIZ7 849 aa14.21□□□□□ -0.13
PTCD3-205ENST00000464541 ZNF454Q8N9F8 522 aa14.21□□□□□ -0.13
PTCD3-205ENST00000464541 OSBPP22059 807 aa14.2□□□□□ -0.14
PTCD3-205ENST00000464541 ERBB3P21860 1342 aa14.19□□□□□ -0.14
PTCD3-205ENST00000464541 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.19□□□□□ -0.14
PTCD3-205ENST00000464541 ZDHHC16Q969W1 377 aa14.19□□□□□ -0.14
PTCD3-205ENST00000464541 MARVELD3Q96A59 401 aa14.18□□□□□ -0.14
PTCD3-205ENST00000464541 EN1Q05925 392 aaPredicted RBP14.16□□□□□ -0.14
PTCD3-205ENST00000464541 LMOD2Q6P5Q4 547 aa14.15□□□□□ -0.14
PTCD3-205ENST00000464541 VARS2Q5ST30 1063 aaKnown RBP14.13□□□□□ -0.15
PTCD3-205ENST00000464541 FAM205CA6NFA0 338 aa14.11□□□□□ -0.15
PTCD3-205ENST00000464541 BCL2L12Q9HB09 334 aa14.11□□□□□ -0.15
PTCD3-205ENST00000464541 MAP3K7O43318 606 aa14.1□□□□□ -0.15
PTCD3-205ENST00000464541 RBM26Q5T8P6 1007 aaKnown RBP14.09□□□□□ -0.15
PTCD3-205ENST00000464541 ADAM33Q9BZ11 813 aa14.09□□□□□ -0.15
PTCD3-205ENST00000464541 PRIM1P49642 420 aaKnown RBP14.08□□□□□ -0.16
PTCD3-205ENST00000464541 HS3ST6Q96QI5 342 aa14.08□□□□□ -0.16
PTCD3-205ENST00000464541 ZNF687Q8N1G0 1237 aa14.07□□□□□ -0.16
PTCD3-205ENST00000464541 RBM33Q96EV2 1170 aaKnown RBP14.07□□□□□ -0.16
PTCD3-205ENST00000464541 PBX2P40425 430 aa14.06□□□□□ -0.16
PTCD3-205ENST00000464541 GPIHBP1Q8IV16 184 aa14.06□□□□□ -0.16
PTCD3-205ENST00000464541 PTPREP23469 700 aa14.05□□□□□ -0.16
PTCD3-205ENST00000464541 C6orf132Q5T0Z8 1188 aa14.05□□□□□ -0.16
PTCD3-205ENST00000464541 CERKQ8TCT0 537 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms