RNA–Protein interactions for RNA: ENST00000462700.5

COL9A3-203, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 1,237 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-203ENST00000462700 SCAPERQ9BY12 1400 aa29.96■■■□□ 2.39
COL9A3-203ENST00000462700 EHBP1L1Q8N3D4 1523 aa29.95■■■□□ 2.38
COL9A3-203ENST00000462700 CDC42BPBQ9Y5S2 1711 aa29.94■■■□□ 2.38
COL9A3-203ENST00000462700 AEBP2Q6ZN18 517 aaPredicted RBP29.94■■■□□ 2.38
COL9A3-203ENST00000462700 KDM4FA0A1W2PPD8 638 aa29.93■■■□□ 2.38
COL9A3-203ENST00000462700 POGZQ7Z3K3 1410 aa29.92■■■□□ 2.38
COL9A3-203ENST00000462700 CDC42BPAQ5VT25 1732 aa29.91■■■□□ 2.38
COL9A3-203ENST00000462700 TIAM1Q13009 1591 aa29.9■■■□□ 2.38
COL9A3-203ENST00000462700 ZMYM4Q5VZL5 1548 aa29.9■■■□□ 2.38
COL9A3-203ENST00000462700 GPATCH8Q9UKJ3 1502 aaKnown RBP29.89■■■□□ 2.38
COL9A3-203ENST00000462700 ARHGEF40Q8TER5 1519 aa29.86■■■□□ 2.37
COL9A3-203ENST00000462700 CCNB3Q8WWL7 1395 aa29.85■■■□□ 2.37
COL9A3-203ENST00000462700 ABCC1P33527 1531 aa29.83■■■□□ 2.37
COL9A3-203ENST00000462700 ZNF518AQ6AHZ1 1483 aa29.82■■■□□ 2.36
COL9A3-203ENST00000462700 MAGI2Q86UL8 1455 aa29.82■■■□□ 2.36
COL9A3-203ENST00000462700 MAP3K1Q13233 1512 aa29.81■■■□□ 2.36
COL9A3-203ENST00000462700 ZFYVE16Q7Z3T8 1539 aa29.81■■■□□ 2.36
COL9A3-203ENST00000462700 ARHGEF12Q9NZN5 1544 aa29.79■■■□□ 2.36
COL9A3-203ENST00000462700 YEATS2Q9ULM3 1422 aa29.79■■■□□ 2.36
COL9A3-203ENST00000462700 LRRC9Q6ZRR7 1453 aa29.78■■■□□ 2.36
COL9A3-203ENST00000462700 KDM5CP41229 1560 aa29.77■■■□□ 2.36
COL9A3-203ENST00000462700 SAMD9LQ8IVG5 1584 aa29.77■■■□□ 2.36
COL9A3-203ENST00000462700 CFDP1Q9UEE9 299 aaPredicted RBP29.77■■■□□ 2.36
COL9A3-203ENST00000462700 SUPT6HQ7KZ85 1726 aaKnown RBP29.76■■■□□ 2.36
COL9A3-203ENST00000462700 NCOA2Q15596 1464 aa29.76■■■□□ 2.35
COL9A3-203ENST00000462700 ZNF777Q9ULD5 760 aaPredicted RBP29.76■■■□□ 2.35
COL9A3-203ENST00000462700 ITSN2Q9NZM3 1697 aa29.76■■■□□ 2.35
COL9A3-203ENST00000462700 AFAP1Q8N556 730 aa29.75■■■□□ 2.35
COL9A3-203ENST00000462700 TRAPPC8Q9Y2L5 1435 aa29.74■■■□□ 2.35
COL9A3-203ENST00000462700 SYCP2Q9BX26 1530 aa29.71■■■□□ 2.35
COL9A3-203ENST00000462700 KANK4Q5T7N3 995 aaPredicted RBP29.7■■■□□ 2.35
COL9A3-203ENST00000462700 PLEKHH2Q8IVE3 1493 aa29.69■■■□□ 2.34
COL9A3-203ENST00000462700 HECW2Q9P2P5 1572 aa29.69■■■□□ 2.34
COL9A3-203ENST00000462700 KIAA1107Q9UPP5 1409 aa29.68■■■□□ 2.34
COL9A3-203ENST00000462700 ARID4BQ4LE39 1312 aaPredicted RBP29.67■■■□□ 2.34
COL9A3-203ENST00000462700 MLH3Q9UHC1 1453 aa29.67■■■□□ 2.34
COL9A3-203ENST00000462700 APLP2Q06481 763 aa29.65■■■□□ 2.34
COL9A3-203ENST00000462700 ATP10AO60312 1499 aa29.65■■■□□ 2.34
COL9A3-203ENST00000462700 HNRNPMP52272 730 aaKnown RBP eCLIP29.64■■■□□ 2.34
COL9A3-203ENST00000462700 C9orf84Q5VXU9 1444 aa29.62■■■□□ 2.33
COL9A3-203ENST00000462700 MYT1LQ9UL68 1186 aa29.62■■■□□ 2.33
COL9A3-203ENST00000462700 ZNF644Q9H582 1327 aaPredicted RBP29.62■■■□□ 2.33
COL9A3-203ENST00000462700 BCORL1Q5H9F3 1711 aa29.62■■■□□ 2.33
COL9A3-203ENST00000462700 SIGLEC1Q9BZZ2 1709 aa29.62■■■□□ 2.33
COL9A3-203ENST00000462700 DIP2CQ9Y2E4 1556 aa29.6■■■□□ 2.33
COL9A3-203ENST00000462700 ADAMTSL3P82987 1691 aa29.6■■■□□ 2.33
COL9A3-203ENST00000462700 ABCA6Q8N139 1617 aa29.58■■■□□ 2.33
COL9A3-203ENST00000462700 KIDINS220Q9ULH0 1771 aa29.56■■■□□ 2.32
COL9A3-203ENST00000462700 MBD5Q9P267 1494 aa29.55■■■□□ 2.32
COL9A3-203ENST00000462700 CAMSAP2Q08AD1 1489 aa29.55■■■□□ 2.32
COL9A3-203ENST00000462700 SPAG9O60271 1321 aaKnown RBP29.54■■■□□ 2.32
COL9A3-203ENST00000462700 REREQ9P2R6 1566 aa29.54■■■□□ 2.32
COL9A3-203ENST00000462700 MADDQ8WXG6 1647 aa29.51■■■□□ 2.31
COL9A3-203ENST00000462700 MYOM3Q5VTT5 1437 aa29.51■■■□□ 2.31
COL9A3-203ENST00000462700 INO80Q9ULG1 1556 aaPredicted RBP29.5■■■□□ 2.31
COL9A3-203ENST00000462700 ATP7AQ04656 1500 aa29.5■■■□□ 2.31
COL9A3-203ENST00000462700 MIA2Q96PC5 1412 aa29.47■■■□□ 2.31
COL9A3-203ENST00000462700 PTPRMP28827 1452 aa29.47■■■□□ 2.31
COL9A3-203ENST00000462700 MLECQ14165 292 aa29.46■■■□□ 2.31
COL9A3-203ENST00000462700 CCDC141Q6ZP82 1450 aa29.45■■■□□ 2.31
COL9A3-203ENST00000462700 AGLP35573 1532 aa29.44■■■□□ 2.3
COL9A3-203ENST00000462700 RSPH4AQ5TD94 716 aa29.42■■■□□ 2.3
COL9A3-203ENST00000462700 RTEL1-TNFRSF6BF6WH68 1400 aa29.41■■■□□ 2.3
COL9A3-203ENST00000462700 ARHGEF5Q12774 1597 aa29.41■■■□□ 2.3
COL9A3-203ENST00000462700 RIMS1Q86UR5 1692 aaKnown RBP29.4■■■□□ 2.3
COL9A3-203ENST00000462700 FER1L4A9Z1Z3 1794 aa29.36■■■□□ 2.29
COL9A3-203ENST00000462700 A2MP01023 1474 aa29.36■■■□□ 2.29
COL9A3-203ENST00000462700 PLXNC1O60486 1568 aa29.35■■■□□ 2.29
COL9A3-203ENST00000462700 FGD6Q6ZV73 1430 aa29.32■■■□□ 2.28
COL9A3-203ENST00000462700 ADGBQ8N7X0 1667 aa29.31■■■□□ 2.28
COL9A3-203ENST00000462700 PTPN23Q9H3S7 1636 aa29.31■■■□□ 2.28
COL9A3-203ENST00000462700 TSPY4P0CV99 314 aa29.3■■■□□ 2.28
COL9A3-203ENST00000462700 TSPY10P0CW01 314 aa29.3■■■□□ 2.28
COL9A3-203ENST00000462700 TCOF1Q13428 1488 aaKnown RBP29.27■■■□□ 2.28
COL9A3-203ENST00000462700 MAST1Q9Y2H9 1570 aa29.26■■■□□ 2.28
COL9A3-203ENST00000462700 DHX29Q7Z478 1369 aaKnown RBP29.25■■■□□ 2.27
COL9A3-203ENST00000462700 PLPPR3Q6T4P5 718 aa29.22■■■□□ 2.27
COL9A3-203ENST00000462700 ABCC5O15440 1437 aa29.2■■■□□ 2.26
COL9A3-203ENST00000462700 ESF1Q9H501 851 aaKnown RBP29.19■■■□□ 2.26
COL9A3-203ENST00000462700 CNTLNQ9NXG0 1405 aa29.18■■■□□ 2.26
COL9A3-203ENST00000462700 SHANK2Q9UPX8 1470 aa29.17■■■□□ 2.26
COL9A3-203ENST00000462700 DAPK1P53355 1430 aa29.17■■■□□ 2.26
COL9A3-203ENST00000462700 DNMT1P26358 1616 aaKnown RBP29.16■■■□□ 2.26
COL9A3-203ENST00000462700 CROCC2H7BZ55 1655 aa29.16■■■□□ 2.26
COL9A3-203ENST00000462700 CEBPAP49715 358 aaPredicted RBP29.15■■■□□ 2.26
COL9A3-203ENST00000462700 GGT6Q6P531 493 aa29.15■■■□□ 2.26
COL9A3-203ENST00000462700 LMTK3Q96Q04 1460 aa29.11■■■□□ 2.25
COL9A3-203ENST00000462700 KIF3BO15066 747 aa29.11■■■□□ 2.25
COL9A3-203ENST00000462700 PPARGC1BQ86YN6 1023 aaKnown RBP29.11■■■□□ 2.25
COL9A3-203ENST00000462700 C3P01024 1663 aa29.1■■■□□ 2.25
COL9A3-203ENST00000462700 PPP6R1Q9UPN7 881 aa29.09■■■□□ 2.25
COL9A3-203ENST00000462700 MROH2AA6NES4 1674 aa29.09■■■□□ 2.25
COL9A3-203ENST00000462700 FAM50AQ14320 339 aaKnown RBP29.08■■■□□ 2.25
COL9A3-203ENST00000462700 CLTCQ00610 1675 aaKnown RBP29.06■■■□□ 2.24
COL9A3-203ENST00000462700 DUOX2Q9NRD8 1548 aa29.05■■■□□ 2.24
COL9A3-203ENST00000462700 KIF15Q9NS87 1388 aa29.05■■■□□ 2.24
COL9A3-203ENST00000462700 ZMYM3Q14202 1370 aa29.04■■■□□ 2.24
COL9A3-203ENST00000462700 EIF2AK4Q9P2K8 1649 aaKnown RBP29.03■■■□□ 2.24
COL9A3-203ENST00000462700 FAM135AQ9P2D6 1515 aa29.01■■■□□ 2.23
COL9A3-203ENST00000462700 RRP7BPQ9NSQ0 103 aa29.01■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms