RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 POGZQ7Z3K3 1410 aa30.63■■■□□ 2.49
VARS-220ENST00000461874 MAGI2Q86UL8 1455 aa30.61■■■□□ 2.49
VARS-220ENST00000461874 YEATS2Q9ULM3 1422 aa30.58■■■□□ 2.49
VARS-220ENST00000461874 ARHGAP5Q13017 1502 aa30.57■■■□□ 2.49
VARS-220ENST00000461874 ADAMTSL3P82987 1691 aa30.57■■■□□ 2.48
VARS-220ENST00000461874 ZFYVE16Q7Z3T8 1539 aa30.57■■■□□ 2.48
VARS-220ENST00000461874 BCORL1Q5H9F3 1711 aa30.53■■■□□ 2.48
VARS-220ENST00000461874 PTPRMP28827 1452 aa30.51■■■□□ 2.48
VARS-220ENST00000461874 CEP162Q5TB80 1403 aa30.49■■■□□ 2.47
VARS-220ENST00000461874 AFAP1Q8N556 730 aa30.49■■■□□ 2.47
VARS-220ENST00000461874 ZNF518AQ6AHZ1 1483 aa30.48■■■□□ 2.47
VARS-220ENST00000461874 HECW2Q9P2P5 1572 aa30.48■■■□□ 2.47
VARS-220ENST00000461874 CDC42BPBQ9Y5S2 1711 aa30.47■■■□□ 2.47
VARS-220ENST00000461874 PREX2Q70Z35 1606 aa30.44■■■□□ 2.46
VARS-220ENST00000461874 ATP10AO60312 1499 aa30.44■■■□□ 2.46
VARS-220ENST00000461874 MADDQ8WXG6 1647 aa30.44■■■□□ 2.46
VARS-220ENST00000461874 KDM5CP41229 1560 aa30.41■■■□□ 2.46
VARS-220ENST00000461874 SIGLEC1Q9BZZ2 1709 aa30.4■■■□□ 2.46
VARS-220ENST00000461874 C9orf84Q5VXU9 1444 aa30.39■■■□□ 2.46
VARS-220ENST00000461874 ARHGEF12Q9NZN5 1544 aa30.39■■■□□ 2.46
VARS-220ENST00000461874 LOC105371045A0A1W2PR82 267 aa30.38■■■□□ 2.45
VARS-220ENST00000461874 TRAPPC8Q9Y2L5 1435 aa30.38■■■□□ 2.45
VARS-220ENST00000461874 ABCC1P33527 1531 aa30.37■■■□□ 2.45
VARS-220ENST00000461874 MTUS2Q5JR59 1369 aa30.37■■■□□ 2.45
VARS-220ENST00000461874 GPATCH8Q9UKJ3 1502 aaKnown RBP30.37■■■□□ 2.45
VARS-220ENST00000461874 MLECQ14165 292 aa30.36■■■□□ 2.45
VARS-220ENST00000461874 MYT1LQ9UL68 1186 aa30.36■■■□□ 2.45
VARS-220ENST00000461874 CDC42BPAQ5VT25 1732 aa30.36■■■□□ 2.45
VARS-220ENST00000461874 MLH3Q9UHC1 1453 aa30.34■■■□□ 2.45
VARS-220ENST00000461874 ZNF777Q9ULD5 760 aaPredicted RBP30.34■■■□□ 2.45
VARS-220ENST00000461874 RIMS1Q86UR5 1692 aaKnown RBP30.31■■■□□ 2.44
VARS-220ENST00000461874 CCNB3Q8WWL7 1395 aa30.3■■■□□ 2.44
VARS-220ENST00000461874 CFDP1Q9UEE9 299 aaPredicted RBP30.29■■■□□ 2.44
VARS-220ENST00000461874 ITSN2Q9NZM3 1697 aa30.28■■■□□ 2.44
VARS-220ENST00000461874 DIP2CQ9Y2E4 1556 aa30.27■■■□□ 2.44
VARS-220ENST00000461874 SAMD9LQ8IVG5 1584 aa30.25■■■□□ 2.43
VARS-220ENST00000461874 HNRNPMP52272 730 aaKnown RBP eCLIP30.24■■■□□ 2.43
VARS-220ENST00000461874 EHBP1L1Q8N3D4 1523 aa30.23■■■□□ 2.43
VARS-220ENST00000461874 KIAA1107Q9UPP5 1409 aa30.22■■■□□ 2.43
VARS-220ENST00000461874 PLPPR3Q6T4P5 718 aa30.22■■■□□ 2.43
VARS-220ENST00000461874 REREQ9P2R6 1566 aa30.22■■■□□ 2.43
VARS-220ENST00000461874 ABCA6Q8N139 1617 aa30.22■■■□□ 2.43
VARS-220ENST00000461874 SYCP2Q9BX26 1530 aa30.21■■■□□ 2.43
VARS-220ENST00000461874 PLEKHH2Q8IVE3 1493 aa30.2■■■□□ 2.43
VARS-220ENST00000461874 SPAG9O60271 1321 aaKnown RBP30.18■■■□□ 2.42
VARS-220ENST00000461874 FER1L4A9Z1Z3 1794 aa30.18■■■□□ 2.42
VARS-220ENST00000461874 LMTK3Q96Q04 1460 aa30.17■■■□□ 2.42
VARS-220ENST00000461874 KIDINS220Q9ULH0 1771 aa30.16■■■□□ 2.42
VARS-220ENST00000461874 VPS8Q8N3P4 1428 aa30.16■■■□□ 2.42
VARS-220ENST00000461874 TIAM1Q13009 1591 aa30.15■■■□□ 2.42
VARS-220ENST00000461874 AGLP35573 1532 aa30.15■■■□□ 2.42
VARS-220ENST00000461874 ZNF644Q9H582 1327 aaPredicted RBP30.13■■■□□ 2.41
VARS-220ENST00000461874 CEBPAP49715 358 aaPredicted RBP30.1■■■□□ 2.41
VARS-220ENST00000461874 NCOA2Q15596 1464 aa30.09■■■□□ 2.41
VARS-220ENST00000461874 MBD5Q9P267 1494 aa30.06■■■□□ 2.4
VARS-220ENST00000461874 HSPA2P54652 639 aa30.05■■■□□ 2.4
VARS-220ENST00000461874 ATP7AQ04656 1500 aa30.05■■■□□ 2.4
VARS-220ENST00000461874 SUPT6HQ7KZ85 1726 aaKnown RBP30.03■■■□□ 2.4
VARS-220ENST00000461874 ESF1Q9H501 851 aaKnown RBP30.03■■■□□ 2.4
VARS-220ENST00000461874 INO80Q9ULG1 1556 aaPredicted RBP30.02■■■□□ 2.4
VARS-220ENST00000461874 LRRC9Q6ZRR7 1453 aa30.01■■■□□ 2.4
VARS-220ENST00000461874 A2MP01023 1474 aa29.98■■■□□ 2.39
VARS-220ENST00000461874 ILDR1Q86SU0 546 aaPredicted RBP29.97■■■□□ 2.39
VARS-220ENST00000461874 MAP3K1Q13233 1512 aa29.96■■■□□ 2.39
VARS-220ENST00000461874 KANK4Q5T7N3 995 aaPredicted RBP29.96■■■□□ 2.39
VARS-220ENST00000461874 CNTLNQ9NXG0 1405 aa29.96■■■□□ 2.39
VARS-220ENST00000461874 RTEL1-TNFRSF6BF6WH68 1400 aa29.95■■■□□ 2.38
VARS-220ENST00000461874 RSPH4AQ5TD94 716 aa29.94■■■□□ 2.38
VARS-220ENST00000461874 PLXNC1O60486 1568 aa29.94■■■□□ 2.38
VARS-220ENST00000461874 CAMSAP2Q08AD1 1489 aa29.93■■■□□ 2.38
VARS-220ENST00000461874 CCDC141Q6ZP82 1450 aa29.9■■■□□ 2.38
VARS-220ENST00000461874 PREX1Q8TCU6 1659 aa29.89■■■□□ 2.38
VARS-220ENST00000461874 C3P01024 1663 aa29.88■■■□□ 2.37
VARS-220ENST00000461874 SETD1BQ9UPS6 1966 aaKnown RBP29.88■■■□□ 2.37
VARS-220ENST00000461874 UHRF1BP1Q6BDS2 1440 aa29.88■■■□□ 2.37
VARS-220ENST00000461874 GGT6Q6P531 493 aa29.86■■■□□ 2.37
VARS-220ENST00000461874 ADGBQ8N7X0 1667 aa29.85■■■□□ 2.37
VARS-220ENST00000461874 ZMYM3Q14202 1370 aa29.85■■■□□ 2.37
VARS-220ENST00000461874 DHX29Q7Z478 1369 aaKnown RBP29.85■■■□□ 2.37
VARS-220ENST00000461874 PPP6R1Q9UPN7 881 aa29.83■■■□□ 2.37
VARS-220ENST00000461874 TSPY4P0CV99 314 aa29.81■■■□□ 2.36
VARS-220ENST00000461874 TSPY10P0CW01 314 aa29.81■■■□□ 2.36
VARS-220ENST00000461874 APLP2Q06481 763 aa29.81■■■□□ 2.36
VARS-220ENST00000461874 ARHGEF5Q12774 1597 aa29.81■■■□□ 2.36
VARS-220ENST00000461874 MYOM3Q5VTT5 1437 aa29.79■■■□□ 2.36
VARS-220ENST00000461874 MROH2AA6NES4 1674 aa29.79■■■□□ 2.36
VARS-220ENST00000461874 NPATQ14207 1427 aa29.78■■■□□ 2.36
VARS-220ENST00000461874 MIA2Q96PC5 1412 aa29.78■■■□□ 2.36
VARS-220ENST00000461874 KIF3BO15066 747 aa29.74■■■□□ 2.35
VARS-220ENST00000461874 CLTCQ00610 1675 aaKnown RBP29.72■■■□□ 2.35
VARS-220ENST00000461874 DMRT2Q9Y5R5 561 aa29.7■■■□□ 2.35
VARS-220ENST00000461874 FBXO41Q8TF61 875 aa29.69■■■□□ 2.34
VARS-220ENST00000461874 PTPRKQ15262 1439 aa29.69■■■□□ 2.34
VARS-220ENST00000461874 STRCQ7RTU9 1775 aa29.65■■■□□ 2.34
VARS-220ENST00000461874 MAST1Q9Y2H9 1570 aa29.64■■■□□ 2.34
VARS-220ENST00000461874 WASHC2CQ9Y4E1 1318 aa29.61■■■□□ 2.33
VARS-220ENST00000461874 NCOA1Q15788 1441 aa29.6■■■□□ 2.33
VARS-220ENST00000461874 FAM135AQ9P2D6 1515 aa29.59■■■□□ 2.33
VARS-220ENST00000461874 PTPRTO14522 1441 aa29.58■■■□□ 2.33
VARS-220ENST00000461874 KDM5DQ9BY66 1539 aa29.58■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms