RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 PPP1R37O75864 691 aa15.01□□□□□ -0.01
USP54-208ENST00000461520 NKX1-1Q15270 411 aaPredicted RBP15□□□□□ -0.01
USP54-208ENST00000461520 DNAJC5Q9H3Z4 198 aa14.95□□□□□ -0.02
USP54-208ENST00000461520 RTN4Q9NQC3 1192 aaKnown RBP14.95□□□□□ -0.02
USP54-208ENST00000461520 AMER1Q5JTC6 1135 aaPredicted RBP14.93□□□□□ -0.02
USP54-208ENST00000461520 HOXB3P14651 431 aaPredicted RBP14.91□□□□□ -0.02
USP54-208ENST00000461520 ZCCHC6Q5VYS8 1495 aaKnown RBP14.89□□□□□ -0.03
USP54-208ENST00000461520 MARVELD3Q96A59 401 aa14.88□□□□□ -0.03
USP54-208ENST00000461520 BICRAQ9NZM4 1560 aa14.88□□□□□ -0.03
USP54-208ENST00000461520 DCAF1Q9Y4B6 1507 aa14.87□□□□□ -0.03
USP54-208ENST00000461520 C2orf72A6NCS6 295 aa14.83□□□□□ -0.04
USP54-208ENST00000461520 DOK7Q18PE1 504 aa14.83□□□□□ -0.04
USP54-208ENST00000461520 ZNF710Q8N1W2 664 aa14.82□□□□□ -0.04
USP54-208ENST00000461520 KIF3CO14782 793 aa14.81□□□□□ -0.04
USP54-208ENST00000461520 GTPBP6O43824 516 aaPredicted RBP14.8□□□□□ -0.04
USP54-208ENST00000461520 RYDENQ9NUL5 291 aaKnown RBP14.79□□□□□ -0.04
USP54-208ENST00000461520 TMC2Q8TDI7 906 aa14.78□□□□□ -0.04
USP54-208ENST00000461520 EMP3P54852 163 aa14.77□□□□□ -0.05
USP54-208ENST00000461520 RIMBP2O15034 1052 aa14.74□□□□□ -0.05
USP54-208ENST00000461520 CDAN1Q8IWY9 1227 aa14.74□□□□□ -0.05
USP54-208ENST00000461520 HOXB1P14653 301 aaPredicted RBP14.73□□□□□ -0.05
USP54-208ENST00000461520 PCDH10Q9P2E7 1040 aa14.73□□□□□ -0.05
USP54-208ENST00000461520 FAM205CA6NFA0 338 aa14.7□□□□□ -0.06
USP54-208ENST00000461520 SHROOM4Q9ULL8 1493 aa14.69□□□□□ -0.06
USP54-208ENST00000461520 POTEB3A0JP26 581 aa14.68□□□□□ -0.06
USP54-208ENST00000461520 GPR153Q6NV75 609 aa14.68□□□□□ -0.06
USP54-208ENST00000461520 POTEBQ6S5H4 581 aa14.68□□□□□ -0.06
USP54-208ENST00000461520 ARSIQ5FYB1 569 aa14.67□□□□□ -0.06
USP54-208ENST00000461520 ZSWIM6Q9HCJ5 1215 aa14.67□□□□□ -0.06
USP54-208ENST00000461520 GPHNQ9NQX3 736 aaPredicted RBP14.66□□□□□ -0.06
USP54-208ENST00000461520 BBXQ8WY36 941 aaPredicted RBP14.65□□□□□ -0.06
USP54-208ENST00000461520 KHSRPQ92945 711 aaKnown RBP eCLIP14.65□□□□□ -0.06
USP54-208ENST00000461520 HS3ST6Q96QI5 342 aa14.65□□□□□ -0.06
USP54-208ENST00000461520 PLSCR2Q9NRY7 297 aa14.64□□□□□ -0.07
USP54-208ENST00000461520 SCRIBQ14160 1630 aa14.63□□□□□ -0.07
USP54-208ENST00000461520 CC2D2AQ9P2K1 1620 aa14.62□□□□□ -0.07
USP54-208ENST00000461520 DSG2Q14126 1118 aa14.61□□□□□ -0.07
USP54-208ENST00000461520 ERBB3P21860 1342 aa14.61□□□□□ -0.07
USP54-208ENST00000461520 FOXK1P85037 733 aa14.6□□□□□ -0.07
USP54-208ENST00000461520 PLPP6Q8IY26 295 aa14.6□□□□□ -0.07
USP54-208ENST00000461520 CECR2Q9BXF3 1484 aa14.59□□□□□ -0.07
USP54-208ENST00000461520 CRISPLD2Q9H0B8 497 aa14.58□□□□□ -0.08
USP54-208ENST00000461520 SLC34A2O95436 690 aa14.57□□□□□ -0.08
USP54-208ENST00000461520 NCKAP5LQ9HCH0 1330 aa14.57□□□□□ -0.08
USP54-208ENST00000461520 PCDHGA4Q9Y5G9 962 aa14.56□□□□□ -0.08
USP54-208ENST00000461520 VARS2Q5ST30 1063 aaKnown RBP14.55□□□□□ -0.08
USP54-208ENST00000461520 EIF4G1Q04637 1599 aaKnown RBP14.53□□□□□ -0.08
USP54-208ENST00000461520 NUDT7P0C024 238 aa14.53□□□□□ -0.08
USP54-208ENST00000461520 PDE4AP27815 886 aa14.52□□□□□ -0.09
USP54-208ENST00000461520 CADPS2Q86UW7 1296 aa14.52□□□□□ -0.09
USP54-208ENST00000461520 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.5□□□□□ -0.09
USP54-208ENST00000461520 SPRYD3Q8NCJ5 442 aa14.49□□□□□ -0.09
USP54-208ENST00000461520 LARP6Q9BRS8 491 aaKnown RBP14.49□□□□□ -0.09
USP54-208ENST00000461520 ZNF316A6NFI3 1004 aaPredicted RBP14.48□□□□□ -0.09
USP54-208ENST00000461520 PPP1R15BQ5SWA1 713 aa14.48□□□□□ -0.09
USP54-208ENST00000461520 PTCD2Q8WV60 388 aaKnown RBP14.48□□□□□ -0.09
USP54-208ENST00000461520 KRTAP3-3Q9BYR6 98 aa14.47□□□□□ -0.09
USP54-208ENST00000461520 KRTAP3-2Q9BYR7 98 aa14.47□□□□□ -0.09
USP54-208ENST00000461520 PAXIP1Q6ZW49 1069 aaPredicted RBP14.45□□□□□ -0.1
USP54-208ENST00000461520 CFAP44Q96MT7 982 aa14.44□□□□□ -0.1
USP54-208ENST00000461520 LHX6Q9UPM6 363 aa14.44□□□□□ -0.1
USP54-208ENST00000461520 UPF1Q92900 1129 aaKnown RBP eCLIP14.42□□□□□ -0.1
USP54-208ENST00000461520 DDX27Q96GQ7 796 aaKnown RBP14.42□□□□□ -0.1
USP54-208ENST00000461520 ZNF687Q8N1G0 1237 aa14.41□□□□□ -0.1
USP54-208ENST00000461520 KDM4FA0A1W2PPD8 638 aa14.39□□□□□ -0.11
USP54-208ENST00000461520 MFSD10Q14728 455 aa14.39□□□□□ -0.11
USP54-208ENST00000461520 OXER1Q8TDS5 423 aa14.39□□□□□ -0.11
USP54-208ENST00000461520 TBC1D12O60347 775 aa14.38□□□□□ -0.11
USP54-208ENST00000461520 SPNS2Q8IVW8 549 aa14.36□□□□□ -0.11
USP54-208ENST00000461520 EMILIN3Q9NT22 766 aa14.29□□□□□ -0.12
USP54-208ENST00000461520 MMRN1Q13201 1228 aa14.26□□□□□ -0.13
USP54-208ENST00000461520 POTEEQ6S8J3 1075 aa14.26□□□□□ -0.13
USP54-208ENST00000461520 AXIN2Q9Y2T1 843 aa14.26□□□□□ -0.13
USP54-208ENST00000461520 PSDA5PKW4 1024 aaPredicted RBP14.24□□□□□ -0.13
USP54-208ENST00000461520 MAP3K9P80192 1104 aa14.24□□□□□ -0.13
USP54-208ENST00000461520 EVI5O60447 810 aa14.22□□□□□ -0.13
USP54-208ENST00000461520 ANKRD13DQ6ZTN6 518 aa14.22□□□□□ -0.13
USP54-208ENST00000461520 PBX2P40425 430 aa14.19□□□□□ -0.14
USP54-208ENST00000461520 CAMK2BQ13554 666 aa14.19□□□□□ -0.14
USP54-208ENST00000461520 PPP4R3BQ5MIZ7 849 aa14.19□□□□□ -0.14
USP54-208ENST00000461520 ANO8Q9HCE9 1232 aaPredicted RBP14.19□□□□□ -0.14
USP54-208ENST00000461520 LSM11P83369 360 aaKnown RBP eCLIP14.18□□□□□ -0.14
USP54-208ENST00000461520 ZNF454Q8N9F8 522 aa14.17□□□□□ -0.14
USP54-208ENST00000461520 ARHGAP33O14559 1287 aa14.15□□□□□ -0.14
USP54-208ENST00000461520 TSHZ2Q9NRE2 1034 aa14.15□□□□□ -0.14
USP54-208ENST00000461520 DPYSL4O14531 572 aa14.14□□□□□ -0.15
USP54-208ENST00000461520 PSEN2P49810 448 aa14.14□□□□□ -0.15
USP54-208ENST00000461520 FOSBP53539 338 aa14.12□□□□□ -0.15
USP54-208ENST00000461520 DMRTA1Q5VZB9 504 aa14.1□□□□□ -0.15
USP54-208ENST00000461520 WDR70Q9NW82 654 aa14.1□□□□□ -0.15
USP54-208ENST00000461520 KCNK17Q96T54 332 aa14.09□□□□□ -0.15
USP54-208ENST00000461520 JPH4Q96JJ6 628 aa14.08□□□□□ -0.16
USP54-208ENST00000461520 E2F4Q16254 413 aa14.07□□□□□ -0.16
USP54-208ENST00000461520 MYT1LQ9UL68 1186 aa14.06□□□□□ -0.16
USP54-208ENST00000461520 NCAPD3P42695 1498 aa14.05□□□□□ -0.16
USP54-208ENST00000461520 ZDHHC16Q969W1 377 aa14.04□□□□□ -0.16
USP54-208ENST00000461520 ADAM33Q9BZ11 813 aa14.04□□□□□ -0.16
USP54-208ENST00000461520 BCL2L12Q9HB09 334 aa14.04□□□□□ -0.16
USP54-208ENST00000461520 PCDHGA10Q9Y5H3 936 aa14.04□□□□□ -0.16
USP54-208ENST00000461520 ADGRD1Q6QNK2 874 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms