RNA–Protein interactions for RNA: ENST00000460928.1

ATPAF1-203, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 869 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-203ENST00000460928 ZNF710Q8N1W2 664 aa10.86□□□□□ -0.67
ATPAF1-203ENST00000460928 RIMBP2O15034 1052 aa10.85□□□□□ -0.67
ATPAF1-203ENST00000460928 HS3ST6Q96QI5 342 aa10.84□□□□□ -0.67
ATPAF1-203ENST00000460928 ZSWIM6Q9HCJ5 1215 aa10.84□□□□□ -0.67
ATPAF1-203ENST00000460928 MMRN1Q13201 1228 aa10.83□□□□□ -0.68
ATPAF1-203ENST00000460928 HS6ST3Q8IZP7 471 aa10.83□□□□□ -0.68
ATPAF1-203ENST00000460928 FAM205CA6NFA0 338 aa10.82□□□□□ -0.68
ATPAF1-203ENST00000460928 POTEB3A0JP26 581 aa10.81□□□□□ -0.68
ATPAF1-203ENST00000460928 POTEBQ6S5H4 581 aa10.81□□□□□ -0.68
ATPAF1-203ENST00000460928 KIF3CO14782 793 aa10.79□□□□□ -0.68
ATPAF1-203ENST00000460928 KRTAP3-3Q9BYR6 98 aa10.78□□□□□ -0.68
ATPAF1-203ENST00000460928 KRTAP3-2Q9BYR7 98 aa10.78□□□□□ -0.68
ATPAF1-203ENST00000460928 GPR153Q6NV75 609 aa10.76□□□□□ -0.69
ATPAF1-203ENST00000460928 DNAJC5Q9H3Z4 198 aa10.76□□□□□ -0.69
ATPAF1-203ENST00000460928 C2orf72A6NCS6 295 aa10.73□□□□□ -0.69
ATPAF1-203ENST00000460928 PPP1R37O75864 691 aa10.73□□□□□ -0.69
ATPAF1-203ENST00000460928 ERBB3P21860 1342 aa10.73□□□□□ -0.69
ATPAF1-203ENST00000460928 CHGAP10645 457 aaKnown RBP10.71□□□□□ -0.69
ATPAF1-203ENST00000460928 SLC34A2O95436 690 aa10.68□□□□□ -0.7
ATPAF1-203ENST00000460928 TMC2Q8TDI7 906 aa10.68□□□□□ -0.7
ATPAF1-203ENST00000460928 ARSIQ5FYB1 569 aa10.67□□□□□ -0.7
ATPAF1-203ENST00000460928 VARS2Q5ST30 1063 aaKnown RBP10.67□□□□□ -0.7
ATPAF1-203ENST00000460928 NKX1-1Q15270 411 aaPredicted RBP10.65□□□□□ -0.7
ATPAF1-203ENST00000460928 RYDENQ9NUL5 291 aaKnown RBP10.65□□□□□ -0.7
ATPAF1-203ENST00000460928 ZNF687Q8N1G0 1237 aa10.64□□□□□ -0.71
ATPAF1-203ENST00000460928 ZNF316A6NFI3 1004 aaPredicted RBP10.61□□□□□ -0.71
ATPAF1-203ENST00000460928 KHSRPQ92945 711 aaKnown RBP eCLIP10.61□□□□□ -0.71
ATPAF1-203ENST00000460928 FOXK1P85037 733 aa10.59□□□□□ -0.71
ATPAF1-203ENST00000460928 GPHNQ9NQX3 736 aaPredicted RBP10.59□□□□□ -0.71
ATPAF1-203ENST00000460928 PCDHGA4Q9Y5G9 962 aa10.59□□□□□ -0.71
ATPAF1-203ENST00000460928 NUDT7P0C024 238 aa10.56□□□□□ -0.72
ATPAF1-203ENST00000460928 PTCD2Q8WV60 388 aaKnown RBP10.55□□□□□ -0.72
ATPAF1-203ENST00000460928 PLPP6Q8IY26 295 aa10.53□□□□□ -0.72
ATPAF1-203ENST00000460928 DSG2Q14126 1118 aa10.52□□□□□ -0.73
ATPAF1-203ENST00000460928 AMER1Q5JTC6 1135 aaPredicted RBP10.52□□□□□ -0.73
ATPAF1-203ENST00000460928 RTN4Q9NQC3 1192 aaKnown RBP10.52□□□□□ -0.73
ATPAF1-203ENST00000460928 KDM4FA0A1W2PPD8 638 aa10.51□□□□□ -0.73
ATPAF1-203ENST00000460928 LHX6Q9UPM6 363 aa10.51□□□□□ -0.73
ATPAF1-203ENST00000460928 GTPBP6O43824 516 aaPredicted RBP10.5□□□□□ -0.73
ATPAF1-203ENST00000460928 RNF166Q96A37 237 aaPredicted RBP10.5□□□□□ -0.73
ATPAF1-203ENST00000460928 CRISPLD2Q9H0B8 497 aa10.5□□□□□ -0.73
ATPAF1-203ENST00000460928 PBX2P40425 430 aa10.49□□□□□ -0.73
ATPAF1-203ENST00000460928 PSDA5PKW4 1024 aaPredicted RBP10.47□□□□□ -0.73
ATPAF1-203ENST00000460928 PTGER2P43116 358 aa10.47□□□□□ -0.73
ATPAF1-203ENST00000460928 MYT1LQ9UL68 1186 aa10.47□□□□□ -0.73
ATPAF1-203ENST00000460928 TBC1D12O60347 775 aa10.44□□□□□ -0.74
ATPAF1-203ENST00000460928 DCAF8L2P0C7V8 631 aa10.44□□□□□ -0.74
ATPAF1-203ENST00000460928 LSM11P83369 360 aaKnown RBP eCLIP10.44□□□□□ -0.74
ATPAF1-203ENST00000460928 NCKAP5LQ9HCH0 1330 aa10.43□□□□□ -0.74
ATPAF1-203ENST00000460928 POTEEQ6S8J3 1075 aa10.43□□□□□ -0.74
ATPAF1-203ENST00000460928 PDE4AP27815 886 aa10.42□□□□□ -0.74
ATPAF1-203ENST00000460928 OXER1Q8TDS5 423 aa10.42□□□□□ -0.74
ATPAF1-203ENST00000460928 PPP1R15BQ5SWA1 713 aa10.41□□□□□ -0.74
ATPAF1-203ENST00000460928 ANKRD13DQ6ZTN6 518 aa10.4□□□□□ -0.74
ATPAF1-203ENST00000460928 ARHGAP33O14559 1287 aa10.37□□□□□ -0.75
ATPAF1-203ENST00000460928 SLC24A1O60721 1099 aa10.36□□□□□ -0.75
ATPAF1-203ENST00000460928 MFSD10Q14728 455 aa10.36□□□□□ -0.75
ATPAF1-203ENST00000460928 PPP4R3BQ5MIZ7 849 aa10.36□□□□□ -0.75
ATPAF1-203ENST00000460928 AXIN2Q9Y2T1 843 aa10.36□□□□□ -0.75
ATPAF1-203ENST00000460928 DDX27Q96GQ7 796 aaKnown RBP10.35□□□□□ -0.75
ATPAF1-203ENST00000460928 UPF1Q92900 1129 aaKnown RBP eCLIP10.34□□□□□ -0.75
ATPAF1-203ENST00000460928 LARP6Q9BRS8 491 aaKnown RBP10.34□□□□□ -0.75
ATPAF1-203ENST00000460928 TK2O00142 265 aa10.31□□□□□ -0.76
ATPAF1-203ENST00000460928 ADGRD1Q6QNK2 874 aa10.3□□□□□ -0.76
ATPAF1-203ENST00000460928 BBXQ8WY36 941 aaPredicted RBP10.3□□□□□ -0.76
ATPAF1-203ENST00000460928 ANO8Q9HCE9 1232 aaPredicted RBP10.3□□□□□ -0.76
ATPAF1-203ENST00000460928 CADPS2Q86UW7 1296 aa10.28□□□□□ -0.76
ATPAF1-203ENST00000460928 PSEN2P49810 448 aa10.27□□□□□ -0.77
ATPAF1-203ENST00000460928 DMRTA1Q5VZB9 504 aa10.27□□□□□ -0.77
ATPAF1-203ENST00000460928 FOSBP53539 338 aa10.26□□□□□ -0.77
ATPAF1-203ENST00000460928 BCL2L12Q9HB09 334 aa10.26□□□□□ -0.77
ATPAF1-203ENST00000460928 HRO43593 1189 aa10.25□□□□□ -0.77
ATPAF1-203ENST00000460928 EVI5O60447 810 aa10.25□□□□□ -0.77
ATPAF1-203ENST00000460928 ZNF454Q8N9F8 522 aa10.25□□□□□ -0.77
ATPAF1-203ENST00000460928 KCNH8Q96L42 1107 aa10.25□□□□□ -0.77
ATPAF1-203ENST00000460928 JPH4Q96JJ6 628 aa10.24□□□□□ -0.77
ATPAF1-203ENST00000460928 EMILIN3Q9NT22 766 aa10.24□□□□□ -0.77
ATPAF1-203ENST00000460928 KCNK17Q96T54 332 aa10.23□□□□□ -0.77
ATPAF1-203ENST00000460928 MAP3K9P80192 1104 aa10.22□□□□□ -0.77
ATPAF1-203ENST00000460928 CAMK2BQ13554 666 aa10.21□□□□□ -0.77
ATPAF1-203ENST00000460928 SLC4A5Q9BY07 1137 aa10.21□□□□□ -0.77
ATPAF1-203ENST00000460928 PTPREP23469 700 aa10.18□□□□□ -0.78
ATPAF1-203ENST00000460928 ZDHHC16Q969W1 377 aa10.18□□□□□ -0.78
ATPAF1-203ENST00000460928 VPS9D1Q9Y2B5 631 aa10.18□□□□□ -0.78
ATPAF1-203ENST00000460928 SPRYD3Q8NCJ5 442 aa10.16□□□□□ -0.78
ATPAF1-203ENST00000460928 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.16□□□□□ -0.78
ATPAF1-203ENST00000460928 HCSTQ9UBK5 93 aa10.16□□□□□ -0.78
ATPAF1-203ENST00000460928 ADAM33Q9BZ11 813 aa10.15□□□□□ -0.78
ATPAF1-203ENST00000460928 ZBED2Q9BTP6 218 aa10.13□□□□□ -0.79
ATPAF1-203ENST00000460928 PCDHGA10Q9Y5H3 936 aa10.13□□□□□ -0.79
ATPAF1-203ENST00000460928 FBXW7Q969H0 707 aa10.12□□□□□ -0.79
ATPAF1-203ENST00000460928 STAC3Q96MF2 364 aa10.12□□□□□ -0.79
ATPAF1-203ENST00000460928 BHMG1C9JSJ3 638 aaPredicted RBP10.11□□□□□ -0.79
ATPAF1-203ENST00000460928 PHF14O94880 888 aa10.11□□□□□ -0.79
ATPAF1-203ENST00000460928 PLA2G2EQ9NZK7 142 aa10.1□□□□□ -0.79
ATPAF1-203ENST00000460928 DPYSL4O14531 572 aa10.09□□□□□ -0.79
ATPAF1-203ENST00000460928 TYW1BQ6NUM6 668 aa10.09□□□□□ -0.79
ATPAF1-203ENST00000460928 PPP1R3GB7ZBB8 358 aa10.08□□□□□ -0.8
ATPAF1-203ENST00000460928 KCTD12Q96CX2 325 aaKnown RBP10.08□□□□□ -0.8
ATPAF1-203ENST00000460928 EPAS1Q99814 870 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms