RNA–Protein interactions for RNA: ENST00000460925.1

SF3A3-202, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 793 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-202ENST00000460925 CLCN6P51797 869 aa8.95□□□□□ -0.98
SF3A3-202ENST00000460925 BMP2KQ9NSY1 1161 aaPredicted RBP8.95□□□□□ -0.98
SF3A3-202ENST00000460925 GPHNQ9NQX3 736 aaPredicted RBP8.94□□□□□ -0.98
SF3A3-202ENST00000460925 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.94□□□□□ -0.983e-7■■■□□ 17.3
SF3A3-202ENST00000460925 GTF3C3Q9Y5Q9 886 aa8.91□□□□□ -0.98
SF3A3-202ENST00000460925 PPP1R15BQ5SWA1 713 aa8.9□□□□□ -0.98
SF3A3-202ENST00000460925 TRIM35Q9UPQ4 493 aa8.9□□□□□ -0.98
SF3A3-202ENST00000460925 ZMYND10O75800 440 aa8.89□□□□□ -0.99
SF3A3-202ENST00000460925 GALR2O43603 387 aaPredicted RBP8.88□□□□□ -0.99
SF3A3-202ENST00000460925 BRPF1P55201 1214 aaPredicted RBP8.88□□□□□ -0.99
SF3A3-202ENST00000460925 CECR2Q9BXF3 1484 aa8.88□□□□□ -0.99
SF3A3-202ENST00000460925 ERICH6Q7L0X2 663 aa8.87□□□□□ -0.99
SF3A3-202ENST00000460925 MICALL2Q8IY33 904 aa8.86□□□□□ -0.99
SF3A3-202ENST00000460925 PDCD7Q8N8D1 485 aaKnown RBP8.86□□□□□ -0.99
SF3A3-202ENST00000460925 DPY19L2Q6NUT2 758 aa8.85□□□□□ -0.99
SF3A3-202ENST00000460925 TMEM121BQ9BXQ6 578 aaPredicted RBP8.85□□□□□ -0.99
SF3A3-202ENST00000460925 SPDYE16A6NNV3 312 aaPredicted RBP8.84□□□□□ -0.99
SF3A3-202ENST00000460925 FOXK1P85037 733 aa8.84□□□□□ -0.99
SF3A3-202ENST00000460925 IER5LQ5T953 404 aa8.84□□□□□ -0.99
SF3A3-202ENST00000460925 BARGINQ6ZT62 677 aa8.84□□□□□ -0.99
SF3A3-202ENST00000460925 SLC24A3Q9HC58 644 aa8.84□□□□□ -0.99
SF3A3-202ENST00000460925 IRX5P78411 483 aaPredicted RBP8.83□□□□□ -1
SF3A3-202ENST00000460925 DSG2Q14126 1118 aa8.83□□□□□ -1
SF3A3-202ENST00000460925 EMILIN3Q9NT22 766 aa8.83□□□□□ -1
SF3A3-202ENST00000460925 EIF4G1Q04637 1599 aaKnown RBP8.82□□□□□ -1
SF3A3-202ENST00000460925 PDIA6Q15084 440 aa8.82□□□□□ -1
SF3A3-202ENST00000460925 TIMELESSQ9UNS1 1208 aa8.82□□□□□ -1
SF3A3-202ENST00000460925 SMARCA4P51532 1647 aa8.82□□□□□ -1
SF3A3-202ENST00000460925 MLLT3P42568 568 aaPredicted RBP8.81□□□□□ -1
SF3A3-202ENST00000460925 ATN1P54259 1190 aaPredicted RBP8.81□□□□□ -1
SF3A3-202ENST00000460925 ASTLQ6HA08 431 aaPredicted RBP8.81□□□□□ -1
SF3A3-202ENST00000460925 TMC2Q8TDI7 906 aa8.81□□□□□ -1
SF3A3-202ENST00000460925 OCEL1Q9H607 264 aa8.81□□□□□ -1
SF3A3-202ENST00000460925 MROH2BQ7Z745 1585 aa8.81□□□□□ -1
SF3A3-202ENST00000460925 KIF3CO14782 793 aa8.8□□□□□ -1
SF3A3-202ENST00000460925 ATMINO43313 823 aaPredicted RBP8.8□□□□□ -1
SF3A3-202ENST00000460925 DPYSL4O14531 572 aa8.79□□□□□ -1
SF3A3-202ENST00000460925 BOLA1Q9Y3E2 137 aa8.79□□□□□ -1
SF3A3-202ENST00000460925 NEUROD2Q15784 382 aa8.78□□□□□ -1
SF3A3-202ENST00000460925 RBM26Q5T8P6 1007 aaKnown RBP8.78□□□□□ -1
SF3A3-202ENST00000460925 GPIHBP1Q8IV16 184 aa8.78□□□□□ -1
SF3A3-202ENST00000460925 BAZ1AQ9NRL2 1556 aaPredicted RBP8.78□□□□□ -1
SF3A3-202ENST00000460925 HAX1O00165 279 aa8.77□□□□□ -1.01
SF3A3-202ENST00000460925 EVX2Q03828 476 aa8.77□□□□□ -1.01
SF3A3-202ENST00000460925 CC2D2AQ9P2K1 1620 aa8.76□□□□□ -1.01
SF3A3-202ENST00000460925 WIZO95785 1651 aa8.76□□□□□ -1.01
SF3A3-202ENST00000460925 PLPP6Q8IY26 295 aa8.76□□□□□ -1.01
SF3A3-202ENST00000460925 C2orf72A6NCS6 295 aa8.75□□□□□ -1.01
SF3A3-202ENST00000460925 AK7Q96M32 723 aa8.75□□□□□ -1.01
SF3A3-202ENST00000460925 L3MBTL3Q96JM7 780 aaPredicted RBP8.73□□□□□ -1.01
SF3A3-202ENST00000460925 RSF1Q96T23 1441 aaPredicted RBP8.72□□□□□ -1.01
SF3A3-202ENST00000460925 G3V3G9 751 aa8.71□□□□□ -1.02
SF3A3-202ENST00000460925 PLCG2P16885 1265 aa8.71□□□□□ -1.02
SF3A3-202ENST00000460925 DAXXQ9UER7 740 aaPredicted RBP8.71□□□□□ -1.02
SF3A3-202ENST00000460925 GPR37O15354 613 aa8.7□□□□□ -1.02
SF3A3-202ENST00000460925 PTGER2P43116 358 aa8.69□□□□□ -1.02
SF3A3-202ENST00000460925 SUPT5HO00267 1087 aaKnown RBP8.68□□□□□ -1.02
SF3A3-202ENST00000460925 MAP3K9P80192 1104 aa8.68□□□□□ -1.02
SF3A3-202ENST00000460925 KRI1Q8N9T8 703 aaKnown RBP8.68□□□□□ -1.02
SF3A3-202ENST00000460925 OXER1Q8TDS5 423 aa8.68□□□□□ -1.02
SF3A3-202ENST00000460925 ATAD2BQ9ULI0 1458 aa8.68□□□□□ -1.02
SF3A3-202ENST00000460925 TMEM92Q6UXU6 159 aa8.67□□□□□ -1.02
SF3A3-202ENST00000460925 PEG3Q9GZU2 1588 aa8.66□□□□□ -1.02
SF3A3-202ENST00000460925 TRIM66O15016 1216 aa8.66□□□□□ -1.02
SF3A3-202ENST00000460925 SMARCA2P51531 1590 aa8.65□□□□□ -1.02
SF3A3-202ENST00000460925 GABBR2O75899 941 aa8.65□□□□□ -1.02
SF3A3-202ENST00000460925 OSBPP22059 807 aa8.64□□□□□ -1.03
SF3A3-202ENST00000460925 MINK1Q8N4C8 1332 aaPredicted RBP8.63□□□□□ -1.03
SF3A3-202ENST00000460925 BAZ1BQ9UIG0 1483 aaKnown RBP8.63□□□□□ -1.03
SF3A3-202ENST00000460925 GRXCR2A6NFK2 248 aa8.62□□□□□ -1.03
SF3A3-202ENST00000460925 PDE4DQ08499 809 aa8.62□□□□□ -1.03
SF3A3-202ENST00000460925 C14orf37Q86TY3 774 aa8.62□□□□□ -1.03
SF3A3-202ENST00000460925 PELP1Q8IZL8 1130 aaKnown RBP8.62□□□□□ -1.03
SF3A3-202ENST00000460925 SLC39A7Q92504 469 aa8.62□□□□□ -1.03
SF3A3-202ENST00000460925 GPBP1L1Q9HC44 474 aaPredicted RBP8.62□□□□□ -1.03
SF3A3-202ENST00000460925 COLQQ9Y215 455 aaPredicted RBP8.62□□□□□ -1.03
SF3A3-202ENST00000460925 TOP2AP11388 1531 aaKnown RBP8.61□□□□□ -1.03
SF3A3-202ENST00000460925 HMGXB3Q12766 1538 aa8.61□□□□□ -1.03
SF3A3-202ENST00000460925 TBC1D12O60347 775 aa8.61□□□□□ -1.03
SF3A3-202ENST00000460925 SEC24BO95487 1268 aa8.61□□□□□ -1.03
SF3A3-202ENST00000460925 MAP2K5Q13163 448 aa8.61□□□□□ -1.03
SF3A3-202ENST00000460925 KDM4CQ9H3R0 1056 aa8.61□□□□□ -1.03
SF3A3-202ENST00000460925 C7P10643 843 aa8.6□□□□□ -1.03
SF3A3-202ENST00000460925 HIC1Q14526 733 aa8.6□□□□□ -1.03
SF3A3-202ENST00000460925 PTCD2Q8WV60 388 aaKnown RBP8.6□□□□□ -1.03
SF3A3-202ENST00000460925 UPF1Q92900 1129 aaKnown RBP eCLIP8.6□□□□□ -1.03
SF3A3-202ENST00000460925 NCAPD3P42695 1498 aa8.59□□□□□ -1.03
SF3A3-202ENST00000460925 GNPATO15228 680 aa8.59□□□□□ -1.03
SF3A3-202ENST00000460925 SLC34A2O95436 690 aa8.59□□□□□ -1.03
SF3A3-202ENST00000460925 DCBLD2Q96PD2 775 aa8.59□□□□□ -1.03
SF3A3-202ENST00000460925 NUTM2FA1L443 756 aa8.58□□□□□ -1.04
SF3A3-202ENST00000460925 POTEFA5A3E0 1075 aa8.58□□□□□ -1.04
SF3A3-202ENST00000460925 IRF6O14896 467 aa8.58□□□□□ -1.04
SF3A3-202ENST00000460925 AMHR2Q16671 573 aa8.58□□□□□ -1.04
SF3A3-202ENST00000460925 ANO8Q9HCE9 1232 aaPredicted RBP8.58□□□□□ -1.04
SF3A3-202ENST00000460925 EVI5O60447 810 aa8.57□□□□□ -1.04
SF3A3-202ENST00000460925 FCHSD2O94868 740 aa8.57□□□□□ -1.04
SF3A3-202ENST00000460925 DDX12PQ92771 950 aa8.56□□□□□ -1.04
SF3A3-202ENST00000460925 CCDC102AQ96A19 550 aa8.56□□□□□ -1.04
SF3A3-202ENST00000460925 ZNF316A6NFI3 1004 aaPredicted RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms