RNA–Protein interactions for RNA: ENST00000460264.5

COL5A1-203, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 3

Gene COL5A1, Length 913 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-203ENST00000460264 POGZQ7Z3K3 1410 aa30.56■■■□□ 2.48
COL5A1-203ENST00000460264 PREX2Q70Z35 1606 aa30.56■■■□□ 2.48
COL5A1-203ENST00000460264 SCAPERQ9BY12 1400 aa30.56■■■□□ 2.48
COL5A1-203ENST00000460264 EFCAB2Q5VUJ9 269 aa30.53■■■□□ 2.48
COL5A1-203ENST00000460264 ZFYVE16Q7Z3T8 1539 aa30.52■■■□□ 2.48
COL5A1-203ENST00000460264 ADAMTSL3P82987 1691 aa30.51■■■□□ 2.47
COL5A1-203ENST00000460264 CDC42BPAQ5VT25 1732 aa30.5■■■□□ 2.47
COL5A1-203ENST00000460264 BCORL1Q5H9F3 1711 aa30.5■■■□□ 2.47
COL5A1-203ENST00000460264 MAGI2Q86UL8 1455 aa30.5■■■□□ 2.47
COL5A1-203ENST00000460264 YEATS2Q9ULM3 1422 aa30.47■■■□□ 2.47
COL5A1-203ENST00000460264 SIGLEC1Q9BZZ2 1709 aa30.44■■■□□ 2.46
COL5A1-203ENST00000460264 ZNF518AQ6AHZ1 1483 aa30.43■■■□□ 2.46
COL5A1-203ENST00000460264 KDM5CP41229 1560 aa30.42■■■□□ 2.46
COL5A1-203ENST00000460264 ABCC1P33527 1531 aa30.42■■■□□ 2.46
COL5A1-203ENST00000460264 MADDQ8WXG6 1647 aa30.4■■■□□ 2.46
COL5A1-203ENST00000460264 ITSN2Q9NZM3 1697 aa30.39■■■□□ 2.46
COL5A1-203ENST00000460264 ARID4BQ4LE39 1312 aaPredicted RBP30.39■■■□□ 2.46
COL5A1-203ENST00000460264 LOC105371045A0A1W2PR82 267 aa30.38■■■□□ 2.45
COL5A1-203ENST00000460264 HECW2Q9P2P5 1572 aa30.36■■■□□ 2.45
COL5A1-203ENST00000460264 PTPRMP28827 1452 aa30.34■■■□□ 2.45
COL5A1-203ENST00000460264 MTUS2Q5JR59 1369 aa30.34■■■□□ 2.45
COL5A1-203ENST00000460264 EHBP1L1Q8N3D4 1523 aa30.33■■■□□ 2.45
COL5A1-203ENST00000460264 ARHGEF12Q9NZN5 1544 aa30.33■■■□□ 2.45
COL5A1-203ENST00000460264 GPATCH8Q9UKJ3 1502 aaKnown RBP30.33■■■□□ 2.45
COL5A1-203ENST00000460264 SAMD9LQ8IVG5 1584 aa30.32■■■□□ 2.44
COL5A1-203ENST00000460264 ATP10AO60312 1499 aa30.31■■■□□ 2.44
COL5A1-203ENST00000460264 AFAP1Q8N556 730 aa30.31■■■□□ 2.44
COL5A1-203ENST00000460264 RIMS1Q86UR5 1692 aaKnown RBP30.3■■■□□ 2.44
COL5A1-203ENST00000460264 C9orf84Q5VXU9 1444 aa30.3■■■□□ 2.44
COL5A1-203ENST00000460264 TRAPPC8Q9Y2L5 1435 aa30.29■■■□□ 2.44
COL5A1-203ENST00000460264 DIP2CQ9Y2E4 1556 aa30.28■■■□□ 2.44
COL5A1-203ENST00000460264 ABCA6Q8N139 1617 aa30.26■■■□□ 2.44
COL5A1-203ENST00000460264 MLH3Q9UHC1 1453 aa30.25■■■□□ 2.43
COL5A1-203ENST00000460264 TIAM1Q13009 1591 aa30.25■■■□□ 2.43
COL5A1-203ENST00000460264 CCNB3Q8WWL7 1395 aa30.25■■■□□ 2.43
COL5A1-203ENST00000460264 VPS8Q8N3P4 1428 aa30.24■■■□□ 2.43
COL5A1-203ENST00000460264 SYCP2Q9BX26 1530 aa30.24■■■□□ 2.43
COL5A1-203ENST00000460264 FER1L4A9Z1Z3 1794 aa30.23■■■□□ 2.43
COL5A1-203ENST00000460264 REREQ9P2R6 1566 aa30.22■■■□□ 2.43
COL5A1-203ENST00000460264 KIDINS220Q9ULH0 1771 aa30.21■■■□□ 2.43
COL5A1-203ENST00000460264 ZNF777Q9ULD5 760 aaPredicted RBP30.2■■■□□ 2.43
COL5A1-203ENST00000460264 SUPT6HQ7KZ85 1726 aaKnown RBP30.18■■■□□ 2.42
COL5A1-203ENST00000460264 PLEKHH2Q8IVE3 1493 aa30.18■■■□□ 2.42
COL5A1-203ENST00000460264 CFDP1Q9UEE9 299 aaPredicted RBP30.17■■■□□ 2.42
COL5A1-203ENST00000460264 MYT1LQ9UL68 1186 aa30.16■■■□□ 2.42
COL5A1-203ENST00000460264 KIAA1107Q9UPP5 1409 aa30.15■■■□□ 2.42
COL5A1-203ENST00000460264 MLECQ14165 292 aa30.14■■■□□ 2.42
COL5A1-203ENST00000460264 NCOA2Q15596 1464 aa30.12■■■□□ 2.41
COL5A1-203ENST00000460264 INO80Q9ULG1 1556 aaPredicted RBP30.1■■■□□ 2.41
COL5A1-203ENST00000460264 AGLP35573 1532 aa30.09■■■□□ 2.41
COL5A1-203ENST00000460264 HNRNPMP52272 730 aaKnown RBP eCLIP30.09■■■□□ 2.41
COL5A1-203ENST00000460264 ATP7AQ04656 1500 aa30.07■■■□□ 2.4
COL5A1-203ENST00000460264 MAP3K1Q13233 1512 aa30.06■■■□□ 2.4
COL5A1-203ENST00000460264 LRRC9Q6ZRR7 1453 aa30.06■■■□□ 2.4
COL5A1-203ENST00000460264 SPAG9O60271 1321 aaKnown RBP30.04■■■□□ 2.4
COL5A1-203ENST00000460264 ZNF644Q9H582 1327 aaPredicted RBP30.03■■■□□ 2.4
COL5A1-203ENST00000460264 LMTK3Q96Q04 1460 aa30.02■■■□□ 2.4
COL5A1-203ENST00000460264 MBD5Q9P267 1494 aa30.01■■■□□ 2.4
COL5A1-203ENST00000460264 CAMSAP2Q08AD1 1489 aa29.98■■■□□ 2.39
COL5A1-203ENST00000460264 PLPPR3Q6T4P5 718 aa29.97■■■□□ 2.39
COL5A1-203ENST00000460264 PLXNC1O60486 1568 aa29.97■■■□□ 2.39
COL5A1-203ENST00000460264 ADGBQ8N7X0 1667 aa29.95■■■□□ 2.39
COL5A1-203ENST00000460264 KANK4Q5T7N3 995 aaPredicted RBP29.92■■■□□ 2.38
COL5A1-203ENST00000460264 A2MP01023 1474 aa29.92■■■□□ 2.38
COL5A1-203ENST00000460264 C3P01024 1663 aa29.91■■■□□ 2.38
COL5A1-203ENST00000460264 CCDC141Q6ZP82 1450 aa29.9■■■□□ 2.38
COL5A1-203ENST00000460264 PREX1Q8TCU6 1659 aa29.9■■■□□ 2.38
COL5A1-203ENST00000460264 ARHGEF5Q12774 1597 aa29.88■■■□□ 2.37
COL5A1-203ENST00000460264 RTEL1-TNFRSF6BF6WH68 1400 aa29.88■■■□□ 2.37
COL5A1-203ENST00000460264 CEBPAP49715 358 aaPredicted RBP29.86■■■□□ 2.37
COL5A1-203ENST00000460264 CNTLNQ9NXG0 1405 aa29.84■■■□□ 2.37
COL5A1-203ENST00000460264 MROH2AA6NES4 1674 aa29.84■■■□□ 2.37
COL5A1-203ENST00000460264 MYOM3Q5VTT5 1437 aa29.82■■■□□ 2.36
COL5A1-203ENST00000460264 ESF1Q9H501 851 aaKnown RBP29.8■■■□□ 2.36
COL5A1-203ENST00000460264 SETD1BQ9UPS6 1966 aaKnown RBP29.79■■■□□ 2.36
COL5A1-203ENST00000460264 RSPH4AQ5TD94 716 aa29.79■■■□□ 2.36
COL5A1-203ENST00000460264 MIA2Q96PC5 1412 aa29.79■■■□□ 2.36
COL5A1-203ENST00000460264 CLTCQ00610 1675 aaKnown RBP29.78■■■□□ 2.36
COL5A1-203ENST00000460264 HSPA2P54652 639 aa29.77■■■□□ 2.36
COL5A1-203ENST00000460264 APLP2Q06481 763 aa29.76■■■□□ 2.35
COL5A1-203ENST00000460264 MAST1Q9Y2H9 1570 aa29.73■■■□□ 2.35
COL5A1-203ENST00000460264 DHX29Q7Z478 1369 aaKnown RBP29.73■■■□□ 2.35
COL5A1-203ENST00000460264 UHRF1BP1Q6BDS2 1440 aa29.71■■■□□ 2.35
COL5A1-203ENST00000460264 PTPN23Q9H3S7 1636 aa29.67■■■□□ 2.34
COL5A1-203ENST00000460264 GGT6Q6P531 493 aa29.67■■■□□ 2.34
COL5A1-203ENST00000460264 ZMYM3Q14202 1370 aa29.66■■■□□ 2.34
COL5A1-203ENST00000460264 NPATQ14207 1427 aa29.66■■■□□ 2.34
COL5A1-203ENST00000460264 TSPY4P0CV99 314 aa29.66■■■□□ 2.34
COL5A1-203ENST00000460264 TSPY10P0CW01 314 aa29.66■■■□□ 2.34
COL5A1-203ENST00000460264 CROCC2H7BZ55 1655 aa29.65■■■□□ 2.34
COL5A1-203ENST00000460264 PPP6R1Q9UPN7 881 aa29.62■■■□□ 2.33
COL5A1-203ENST00000460264 STRCQ7RTU9 1775 aa29.61■■■□□ 2.33
COL5A1-203ENST00000460264 FGD6Q6ZV73 1430 aa29.61■■■□□ 2.33
COL5A1-203ENST00000460264 FAM135AQ9P2D6 1515 aa29.61■■■□□ 2.33
COL5A1-203ENST00000460264 KIF3BO15066 747 aa29.59■■■□□ 2.33
COL5A1-203ENST00000460264 TCOF1Q13428 1488 aaKnown RBP29.58■■■□□ 2.33
COL5A1-203ENST00000460264 PTPRKQ15262 1439 aa29.58■■■□□ 2.33
COL5A1-203ENST00000460264 KDM5DQ9BY66 1539 aa29.58■■■□□ 2.33
COL5A1-203ENST00000460264 MYO3AQ8NEV4 1616 aa29.57■■■□□ 2.32
COL5A1-203ENST00000460264 RNF17Q9BXT8 1623 aaKnown RBP29.57■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms