RNA–Protein interactions for RNA: ENST00000459854.5

UFD1-205, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 1 (best)

Gene UFD1, Length 5,038 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-205ENST00000459854 LRRC9Q6ZRR7 1453 aa13.16□□□□□ -0.3
UFD1-205ENST00000459854 ASXL2Q76L83 1435 aa13.15□□□□□ -0.3
UFD1-205ENST00000459854 ATP10BO94823 1461 aa13.15□□□□□ -0.3
UFD1-205ENST00000459854 NEUROD1Q13562 356 aa13.15□□□□□ -0.31
UFD1-205ENST00000459854 NUP153P49790 1475 aaKnown RBP13.14□□□□□ -0.31
UFD1-205ENST00000459854 ARID4BQ4LE39 1312 aaPredicted RBP13.13□□□□□ -0.31
UFD1-205ENST00000459854 SHROOM2Q13796 1616 aa13.13□□□□□ -0.31
UFD1-205ENST00000459854 WDR7Q9Y4E6 1490 aa13.12□□□□□ -0.31
UFD1-205ENST00000459854 DDRGK1Q96HY6 314 aa13.12□□□□□ -0.31
UFD1-205ENST00000459854 RIMBP3CA6NJZ7 1639 aa13.12□□□□□ -0.31
UFD1-205ENST00000459854 RIMBP3BA6NNM3 1639 aa13.12□□□□□ -0.31
UFD1-205ENST00000459854 RIMBP3Q9UFD9 1639 aa13.12□□□□□ -0.31
UFD1-205ENST00000459854 CD109Q6YHK3 1445 aa13.12□□□□□ -0.31
UFD1-205ENST00000459854 TIAM1Q13009 1591 aa13.12□□□□□ -0.31
UFD1-205ENST00000459854 ERCC6L2Q5T890 1561 aa13.12□□□□□ -0.31
UFD1-205ENST00000459854 MAP3K1Q13233 1512 aa13.12□□□□□ -0.31
UFD1-205ENST00000459854 ERICH6BQ5W0A0 696 aa13.11□□□□□ -0.31
UFD1-205ENST00000459854 CANXP27824 592 aaKnown RBP13.11□□□□□ -0.31
UFD1-205ENST00000459854 NCOA2Q15596 1464 aa13.1□□□□□ -0.31
UFD1-205ENST00000459854 ARHGAP5Q13017 1502 aa13.1□□□□□ -0.31
UFD1-205ENST00000459854 SPAG9O60271 1321 aaKnown RBP13.1□□□□□ -0.31
UFD1-205ENST00000459854 KIF14Q15058 1648 aa13.09□□□□□ -0.31
UFD1-205ENST00000459854 ABCA8O94911 1581 aa13.09□□□□□ -0.31
UFD1-205ENST00000459854 NPM2Q86SE8 214 aaKnown RBP13.09□□□□□ -0.31
UFD1-205ENST00000459854 MYOM3Q5VTT5 1437 aa13.09□□□□□ -0.31
UFD1-205ENST00000459854 HNRNPMP52272 730 aaKnown RBP eCLIP13.08□□□□□ -0.31
UFD1-205ENST00000459854 PLEKHH2Q8IVE3 1493 aa13.08□□□□□ -0.32
UFD1-205ENST00000459854 KDM5BQ9UGL1 1544 aa13.07□□□□□ -0.32
UFD1-205ENST00000459854 TEX14Q8IWB6 1497 aa13.06□□□□□ -0.32
UFD1-205ENST00000459854 RRP7BPQ9NSQ0 103 aa13.06□□□□□ -0.32
UFD1-205ENST00000459854 SUPT6HQ7KZ85 1726 aaKnown RBP13.05□□□□□ -0.32
UFD1-205ENST00000459854 PPM1GO15355 546 aaPredicted RBP13.05□□□□□ -0.32
UFD1-205ENST00000459854 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.05□□□□□ -0.321e-6■■□□□ 11.7
UFD1-205ENST00000459854 ANKRD30AQ9BXX3 1397 aa13.04□□□□□ -0.32
UFD1-205ENST00000459854 MIA2Q96PC5 1412 aa13.04□□□□□ -0.32
UFD1-205ENST00000459854 CNGB1Q14028 1251 aaPredicted RBP13.04□□□□□ -0.32
UFD1-205ENST00000459854 TRIM44Q96DX7 344 aaPredicted RBP13.04□□□□□ -0.32
UFD1-205ENST00000459854 PHLDB1Q86UU1 1377 aa13.03□□□□□ -0.32
UFD1-205ENST00000459854 FGD6Q6ZV73 1430 aa13.03□□□□□ -0.32
UFD1-205ENST00000459854 HSP90AA1P07900 732 aaKnown RBP13.03□□□□□ -0.32
UFD1-205ENST00000459854 NBR1Q14596 966 aa13.02□□□□□ -0.32
UFD1-205ENST00000459854 BCL11AQ9H165 835 aa13.01□□□□□ -0.33
UFD1-205ENST00000459854 NCLP19338 710 aaKnown RBP13.01□□□□□ -0.33
UFD1-205ENST00000459854 GOLGA6L2Q8N9W4 650 aaPredicted RBP13□□□□□ -0.33
UFD1-205ENST00000459854 CCDC136Q96JN2 1154 aa13□□□□□ -0.33
UFD1-205ENST00000459854 KANK1Q14678 1352 aa13□□□□□ -0.33
UFD1-205ENST00000459854 SCAPERQ9BY12 1400 aa12.99□□□□□ -0.33
UFD1-205ENST00000459854 PLCH2O75038 1416 aa12.99□□□□□ -0.33
UFD1-205ENST00000459854 FANCAO15360 1455 aa12.98□□□□□ -0.33
UFD1-205ENST00000459854 BECN1Q14457 450 aa12.97□□□□□ -0.33
UFD1-205ENST00000459854 NEFMP07197 916 aa12.97□□□□□ -0.33
UFD1-205ENST00000459854 SLC4A1APQ9BWU0 796 aaKnown RBP12.97□□□□□ -0.33
UFD1-205ENST00000459854 ZCCHC11Q5TAX3 1644 aaKnown RBP12.97□□□□□ -0.33
UFD1-205ENST00000459854 ZNF644Q9H582 1327 aaPredicted RBP12.97□□□□□ -0.33
UFD1-205ENST00000459854 ADGRL1O94910 1474 aa12.97□□□□□ -0.33
UFD1-205ENST00000459854 PLPPR3Q6T4P5 718 aa12.96□□□□□ -0.33
UFD1-205ENST00000459854 MLECQ14165 292 aa12.96□□□□□ -0.33
UFD1-205ENST00000459854 HNRNPUQ00839 825 aaKnown RBP eCLIP12.96□□□□□ -0.34
UFD1-205ENST00000459854 AFAP1Q8N556 730 aa12.95□□□□□ -0.34
UFD1-205ENST00000459854 ADCY10Q96PN6 1610 aa12.95□□□□□ -0.34
UFD1-205ENST00000459854 AKNAQ7Z591 1439 aa12.95□□□□□ -0.34
UFD1-205ENST00000459854 DENND4BO75064 1496 aaPredicted RBP12.95□□□□□ -0.34
UFD1-205ENST00000459854 STAG3Q9UJ98 1225 aa12.95□□□□□ -0.34
UFD1-205ENST00000459854 GGT6Q6P531 493 aa12.95□□□□□ -0.34
UFD1-205ENST00000459854 ABCC10Q5T3U5 1492 aa12.94□□□□□ -0.34
UFD1-205ENST00000459854 CFAP43Q8NDM7 1665 aa12.94□□□□□ -0.34
UFD1-205ENST00000459854 KIF3BO15066 747 aa12.94□□□□□ -0.34
UFD1-205ENST00000459854 RAPGEF3O95398 923 aa12.94□□□□□ -0.34
UFD1-205ENST00000459854 GPATCH8Q9UKJ3 1502 aaKnown RBP12.93□□□□□ -0.34
UFD1-205ENST00000459854 MAPKBP1O60336 1514 aa12.92□□□□□ -0.34
UFD1-205ENST00000459854 ITSN2Q9NZM3 1697 aa12.91□□□□□ -0.34
UFD1-205ENST00000459854 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.9□□□□□ -0.342e-7■□□□□ 9.2
UFD1-205ENST00000459854 CCDC141Q6ZP82 1450 aa12.9□□□□□ -0.34
UFD1-205ENST00000459854 CAMSAP2Q08AD1 1489 aa12.89□□□□□ -0.35
UFD1-205ENST00000459854 NEO1Q92859 1461 aa12.89□□□□□ -0.35
UFD1-205ENST00000459854 GOLGA6L22H0YM25 854 aa12.89□□□□□ -0.35
UFD1-205ENST00000459854 RRBP1Q9P2E9 1410 aaKnown RBP12.89□□□□□ -0.35
UFD1-205ENST00000459854 KIF15Q9NS87 1388 aa12.88□□□□□ -0.35
UFD1-205ENST00000459854 SETD5Q9C0A6 1442 aa12.88□□□□□ -0.35
UFD1-205ENST00000459854 KIAA1107Q9UPP5 1409 aa12.88□□□□□ -0.35
UFD1-205ENST00000459854 POGZQ7Z3K3 1410 aa12.88□□□□□ -0.35
UFD1-205ENST00000459854 CHGAP10645 457 aaKnown RBP12.88□□□□□ -0.35
UFD1-205ENST00000459854 C9orf84Q5VXU9 1444 aa12.88□□□□□ -0.35
UFD1-205ENST00000459854 TONSLQ96HA7 1378 aa12.87□□□□□ -0.35
UFD1-205ENST00000459854 WASHC2CQ9Y4E1 1318 aa12.87□□□□□ -0.35
UFD1-205ENST00000459854 CFAP74Q9C0B2 1584 aa12.86□□□□□ -0.35
UFD1-205ENST00000459854 ZNF518AQ6AHZ1 1483 aa12.86□□□□□ -0.35
UFD1-205ENST00000459854 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.85□□□□□ -0.35
UFD1-205ENST00000459854 CDK11BP21127 795 aaKnown RBP12.85□□□□□ -0.35
UFD1-205ENST00000459854 DAPK1P53355 1430 aa12.85□□□□□ -0.35
UFD1-205ENST00000459854 PTPN23Q9H3S7 1636 aa12.85□□□□□ -0.35
UFD1-205ENST00000459854 NUP155O75694 1391 aa12.84□□□□□ -0.35
UFD1-205ENST00000459854 NOP58Q9Y2X3 529 aaKnown RBP12.84□□□□□ -0.35
UFD1-205ENST00000459854 MAGI3Q5TCQ9 1506 aa12.82□□□□□ -0.36
UFD1-205ENST00000459854 ANKRD50Q9ULJ7 1429 aa12.82□□□□□ -0.36
UFD1-205ENST00000459854 L1TD1Q5T7N2 865 aaKnown RBP12.81□□□□□ -0.36
UFD1-205ENST00000459854 MIER1Q8N108 512 aa12.81□□□□□ -0.36
UFD1-205ENST00000459854 NAP1L5Q96NT1 182 aaPredicted RBP12.81□□□□□ -0.36
UFD1-205ENST00000459854 MYO5CQ9NQX4 1742 aa12.81□□□□□ -0.36
UFD1-205ENST00000459854 ROCK1Q13464 1354 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms