RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 HS3ST6Q96QI5 342 aa11.24□□□□□ -0.61
VPS41-209ENST00000457055 HOXB1P14653 301 aaPredicted RBP11.22□□□□□ -0.61
VPS41-209ENST00000457055 POTEB3A0JP26 581 aa11.2□□□□□ -0.62
VPS41-209ENST00000457055 POTEBQ6S5H4 581 aa11.2□□□□□ -0.62
VPS41-209ENST00000457055 ZSWIM6Q9HCJ5 1215 aa11.16□□□□□ -0.62
VPS41-209ENST00000457055 ERBB3P21860 1342 aa11.14□□□□□ -0.63
VPS41-209ENST00000457055 SPNS2Q8IVW8 549 aa11.14□□□□□ -0.63
VPS41-209ENST00000457055 KRTAP3-3Q9BYR6 98 aa11.13□□□□□ -0.63
VPS41-209ENST00000457055 KRTAP3-2Q9BYR7 98 aa11.13□□□□□ -0.63
VPS41-209ENST00000457055 HS6ST3Q8IZP7 471 aa11.12□□□□□ -0.63
VPS41-209ENST00000457055 C2orf72A6NCS6 295 aa11.1□□□□□ -0.63
VPS41-209ENST00000457055 KIF3CO14782 793 aa11.1□□□□□ -0.63
VPS41-209ENST00000457055 GPR153Q6NV75 609 aa11.1□□□□□ -0.63
VPS41-209ENST00000457055 PPP1R37O75864 691 aa11.09□□□□□ -0.63
VPS41-209ENST00000457055 MMRN1Q13201 1228 aa11.09□□□□□ -0.63
VPS41-209ENST00000457055 VARS2Q5ST30 1063 aaKnown RBP11.09□□□□□ -0.63
VPS41-209ENST00000457055 CHGAP10645 457 aaKnown RBP11.08□□□□□ -0.64
VPS41-209ENST00000457055 ARSIQ5FYB1 569 aa11.07□□□□□ -0.64
VPS41-209ENST00000457055 TMC2Q8TDI7 906 aa11.07□□□□□ -0.64
VPS41-209ENST00000457055 KHSRPQ92945 711 aaKnown RBP eCLIP11.03□□□□□ -0.642e-6■■■■□ 20
VPS41-209ENST00000457055 ZNF687Q8N1G0 1237 aa10.99□□□□□ -0.65
VPS41-209ENST00000457055 ZNF316A6NFI3 1004 aaPredicted RBP10.98□□□□□ -0.65
VPS41-209ENST00000457055 SLC34A2O95436 690 aa10.97□□□□□ -0.65
VPS41-209ENST00000457055 NKX1-1Q15270 411 aaPredicted RBP10.97□□□□□ -0.65
VPS41-209ENST00000457055 NUDT7P0C024 238 aa10.96□□□□□ -0.65
VPS41-209ENST00000457055 DNAJC5Q9H3Z4 198 aa10.96□□□□□ -0.65
VPS41-209ENST00000457055 PCDHGA4Q9Y5G9 962 aa10.95□□□□□ -0.66
VPS41-209ENST00000457055 RYDENQ9NUL5 291 aaKnown RBP10.94□□□□□ -0.66
VPS41-209ENST00000457055 FOXK1P85037 733 aa10.9□□□□□ -0.66
VPS41-209ENST00000457055 GPHNQ9NQX3 736 aaPredicted RBP10.9□□□□□ -0.66
VPS41-209ENST00000457055 DCAF8L2P0C7V8 631 aa10.89□□□□□ -0.67
VPS41-209ENST00000457055 PLPP6Q8IY26 295 aa10.89□□□□□ -0.67
VPS41-209ENST00000457055 LHX6Q9UPM6 363 aa10.89□□□□□ -0.67
VPS41-209ENST00000457055 DSG2Q14126 1118 aa10.87□□□□□ -0.67
VPS41-209ENST00000457055 PTCD2Q8WV60 388 aaKnown RBP10.85□□□□□ -0.67
VPS41-209ENST00000457055 ANKRD13DQ6ZTN6 518 aa10.84□□□□□ -0.67
VPS41-209ENST00000457055 RNF166Q96A37 237 aaPredicted RBP10.84□□□□□ -0.67
VPS41-209ENST00000457055 PBX2P40425 430 aa10.83□□□□□ -0.68
VPS41-209ENST00000457055 LSM11P83369 360 aaKnown RBP eCLIP10.83□□□□□ -0.68
VPS41-209ENST00000457055 MYT1LQ9UL68 1186 aa10.83□□□□□ -0.68
VPS41-209ENST00000457055 PSDA5PKW4 1024 aaPredicted RBP10.8□□□□□ -0.68
VPS41-209ENST00000457055 GTPBP6O43824 516 aaPredicted RBP10.8□□□□□ -0.68
VPS41-209ENST00000457055 SLC24A1O60721 1099 aa10.8□□□□□ -0.68
VPS41-209ENST00000457055 PTGER2P43116 358 aa10.8□□□□□ -0.68
VPS41-209ENST00000457055 CRISPLD2Q9H0B8 497 aa10.8□□□□□ -0.68
VPS41-209ENST00000457055 KDM4FA0A1W2PPD8 638 aa10.79□□□□□ -0.68
VPS41-209ENST00000457055 TBC1D12O60347 775 aa10.79□□□□□ -0.68
VPS41-209ENST00000457055 AXIN2Q9Y2T1 843 aa10.79□□□□□ -0.68
VPS41-209ENST00000457055 POTEEQ6S8J3 1075 aa10.78□□□□□ -0.68
VPS41-209ENST00000457055 PPP1R15BQ5SWA1 713 aa10.77□□□□□ -0.69
VPS41-209ENST00000457055 PDE4AP27815 886 aa10.75□□□□□ -0.69
VPS41-209ENST00000457055 UPF1Q92900 1129 aaKnown RBP eCLIP10.75□□□□□ -0.69
VPS41-209ENST00000457055 NCKAP5LQ9HCH0 1330 aa10.75□□□□□ -0.69
VPS41-209ENST00000457055 OXER1Q8TDS5 423 aa10.74□□□□□ -0.69
VPS41-209ENST00000457055 ARHGAP33O14559 1287 aa10.73□□□□□ -0.69
VPS41-209ENST00000457055 PPP4R3BQ5MIZ7 849 aa10.72□□□□□ -0.69
VPS41-209ENST00000457055 LARP6Q9BRS8 491 aaKnown RBP10.69□□□□□ -0.7
VPS41-209ENST00000457055 DDX27Q96GQ7 796 aaKnown RBP10.68□□□□□ -0.7
VPS41-209ENST00000457055 PSEN2P49810 448 aa10.67□□□□□ -0.7
VPS41-209ENST00000457055 ADGRD1Q6QNK2 874 aa10.67□□□□□ -0.7
VPS41-209ENST00000457055 DMRTA1Q5VZB9 504 aa10.65□□□□□ -0.7
VPS41-209ENST00000457055 MFSD10Q14728 455 aa10.64□□□□□ -0.71
VPS41-209ENST00000457055 ZNF454Q8N9F8 522 aa10.64□□□□□ -0.71
VPS41-209ENST00000457055 KCNH8Q96L42 1107 aa10.64□□□□□ -0.71
VPS41-209ENST00000457055 KCNK17Q96T54 332 aa10.63□□□□□ -0.71
VPS41-209ENST00000457055 TK2O00142 265 aa10.62□□□□□ -0.71
VPS41-209ENST00000457055 CADPS2Q86UW7 1296 aa10.61□□□□□ -0.71
VPS41-209ENST00000457055 EVI5O60447 810 aa10.6□□□□□ -0.71
VPS41-209ENST00000457055 FOSBP53539 338 aa10.59□□□□□ -0.71
VPS41-209ENST00000457055 MAP3K9P80192 1104 aa10.58□□□□□ -0.72
VPS41-209ENST00000457055 BBXQ8WY36 941 aaPredicted RBP10.58□□□□□ -0.72
VPS41-209ENST00000457055 HRO43593 1189 aa10.57□□□□□ -0.72
VPS41-209ENST00000457055 JPH4Q96JJ6 628 aa10.57□□□□□ -0.72
VPS41-209ENST00000457055 BCL2L12Q9HB09 334 aa10.57□□□□□ -0.72
VPS41-209ENST00000457055 ANO8Q9HCE9 1232 aaPredicted RBP10.57□□□□□ -0.72
VPS41-209ENST00000457055 EMILIN3Q9NT22 766 aa10.57□□□□□ -0.72
VPS41-209ENST00000457055 AMER1Q5JTC6 1135 aaPredicted RBP10.56□□□□□ -0.72
VPS41-209ENST00000457055 PTPREP23469 700 aa10.54□□□□□ -0.72
VPS41-209ENST00000457055 STAC3Q96MF2 364 aa10.54□□□□□ -0.72
VPS41-209ENST00000457055 HCSTQ9UBK5 93 aa10.53□□□□□ -0.72
VPS41-209ENST00000457055 ZDHHC16Q969W1 377 aa10.52□□□□□ -0.73
VPS41-209ENST00000457055 VPS9D1Q9Y2B5 631 aa10.52□□□□□ -0.73
VPS41-209ENST00000457055 ADAM33Q9BZ11 813 aa10.5□□□□□ -0.73
VPS41-209ENST00000457055 KCTD12Q96CX2 325 aaKnown RBP10.49□□□□□ -0.73
VPS41-209ENST00000457055 RTN4Q9NQC3 1192 aaKnown RBP10.49□□□□□ -0.73
VPS41-209ENST00000457055 SLC4A5Q9BY07 1137 aa10.48□□□□□ -0.73
VPS41-209ENST00000457055 CAMK2BQ13554 666 aa10.47□□□□□ -0.73
VPS41-209ENST00000457055 SPRYD3Q8NCJ5 442 aa10.47□□□□□ -0.73
VPS41-209ENST00000457055 ZBED2Q9BTP6 218 aa10.47□□□□□ -0.73
VPS41-209ENST00000457055 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.47□□□□□ -0.73
VPS41-209ENST00000457055 PCDHGA10Q9Y5H3 936 aa10.46□□□□□ -0.73
VPS41-209ENST00000457055 DPYSL4O14531 572 aa10.45□□□□□ -0.74
VPS41-209ENST00000457055 PHF14O94880 888 aa10.43□□□□□ -0.74
VPS41-209ENST00000457055 TYW1BQ6NUM6 668 aa10.43□□□□□ -0.74
VPS41-209ENST00000457055 PLA2G2EQ9NZK7 142 aa10.43□□□□□ -0.74
VPS41-209ENST00000457055 PPP1R3GB7ZBB8 358 aa10.42□□□□□ -0.74
VPS41-209ENST00000457055 BHMG1C9JSJ3 638 aaPredicted RBP10.42□□□□□ -0.74
VPS41-209ENST00000457055 FBXW7Q969H0 707 aa10.42□□□□□ -0.74
VPS41-209ENST00000457055 MRPL50Q8N5N7 158 aaKnown RBP10.41□□□□□ -0.74
VPS41-209ENST00000457055 GOLGA8CPA6NN73 597 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms