RNA–Protein interactions for RNA: ENST00000455111.1

GPC1-206, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 841 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-206ENST00000455111 TROQ12816 1431 aaPredicted RBP26.51■■□□□ 1.83
GPC1-206ENST00000455111 POGZQ7Z3K3 1410 aa26.51■■□□□ 1.83
GPC1-206ENST00000455111 SCAPERQ9BY12 1400 aa26.5■■□□□ 1.83
GPC1-206ENST00000455111 CDC42BPBQ9Y5S2 1711 aa26.5■■□□□ 1.83
GPC1-206ENST00000455111 CASKIN1Q8WXD9 1431 aa26.45■■□□□ 1.82
GPC1-206ENST00000455111 MAGI2Q86UL8 1455 aa26.44■■□□□ 1.82
GPC1-206ENST00000455111 ARID4BQ4LE39 1312 aaPredicted RBP26.42■■□□□ 1.82
GPC1-206ENST00000455111 ILDR1Q86SU0 546 aaPredicted RBP26.4■■□□□ 1.82
GPC1-206ENST00000455111 KDM5CP41229 1560 aa26.4■■□□□ 1.82
GPC1-206ENST00000455111 PREX2Q70Z35 1606 aa26.39■■□□□ 1.82
GPC1-206ENST00000455111 ARHGAP5Q13017 1502 aa26.39■■□□□ 1.81
GPC1-206ENST00000455111 CDC42BPAQ5VT25 1732 aa26.38■■□□□ 1.81
GPC1-206ENST00000455111 LMTK3Q96Q04 1460 aa26.37■■□□□ 1.81
GPC1-206ENST00000455111 CDK11AQ9UQ88 783 aaPredicted RBP26.37■■□□□ 1.81
GPC1-206ENST00000455111 ARHGEF12Q9NZN5 1544 aa26.37■■□□□ 1.81
GPC1-206ENST00000455111 FER1L4A9Z1Z3 1794 aa26.36■■□□□ 1.81
GPC1-206ENST00000455111 EFCAB2Q5VUJ9 269 aa26.36■■□□□ 1.81
GPC1-206ENST00000455111 CCDC18Q5T9S5 1454 aa26.36■■□□□ 1.81
GPC1-206ENST00000455111 CLIP1P30622 1438 aa26.34■■□□□ 1.81
GPC1-206ENST00000455111 FYCO1Q9BQS8 1478 aa26.34■■□□□ 1.81
GPC1-206ENST00000455111 ATP10AO60312 1499 aa26.33■■□□□ 1.81
GPC1-206ENST00000455111 ITSN2Q9NZM3 1697 aa26.33■■□□□ 1.81
GPC1-206ENST00000455111 DIP2CQ9Y2E4 1556 aa26.33■■□□□ 1.8
GPC1-206ENST00000455111 ABCC1P33527 1531 aa26.32■■□□□ 1.8
GPC1-206ENST00000455111 AFAP1Q8N556 730 aa26.31■■□□□ 1.8
GPC1-206ENST00000455111 ABCA6Q8N139 1617 aa26.31■■□□□ 1.8
GPC1-206ENST00000455111 ZNF518AQ6AHZ1 1483 aa26.3■■□□□ 1.8
GPC1-206ENST00000455111 C9orf84Q5VXU9 1444 aa26.3■■□□□ 1.8
GPC1-206ENST00000455111 TRAPPC8Q9Y2L5 1435 aa26.28■■□□□ 1.8
GPC1-206ENST00000455111 MLECQ14165 292 aa26.26■■□□□ 1.79
GPC1-206ENST00000455111 KIDINS220Q9ULH0 1771 aa26.24■■□□□ 1.79
GPC1-206ENST00000455111 SAMD9LQ8IVG5 1584 aa26.24■■□□□ 1.79
GPC1-206ENST00000455111 REREQ9P2R6 1566 aa26.23■■□□□ 1.79
GPC1-206ENST00000455111 MLH3Q9UHC1 1453 aa26.22■■□□□ 1.79
GPC1-206ENST00000455111 GPATCH8Q9UKJ3 1502 aaKnown RBP26.19■■□□□ 1.78
GPC1-206ENST00000455111 PLPPR3Q6T4P5 718 aa26.19■■□□□ 1.78
GPC1-206ENST00000455111 HSPA2P54652 639 aa26.16■■□□□ 1.78
GPC1-206ENST00000455111 SYCP2Q9BX26 1530 aa26.14■■□□□ 1.78
GPC1-206ENST00000455111 CEBPAP49715 358 aaPredicted RBP26.12■■□□□ 1.77
GPC1-206ENST00000455111 AGLP35573 1532 aa26.12■■□□□ 1.77
GPC1-206ENST00000455111 PREX1Q8TCU6 1659 aa26.12■■□□□ 1.77
GPC1-206ENST00000455111 C3P01024 1663 aa26.1■■□□□ 1.77
GPC1-206ENST00000455111 TIAM1Q13009 1591 aa26.07■■□□□ 1.76
GPC1-206ENST00000455111 CEP162Q5TB80 1403 aa26.06■■□□□ 1.76
GPC1-206ENST00000455111 INO80Q9ULG1 1556 aaPredicted RBP26.06■■□□□ 1.76
GPC1-206ENST00000455111 STRCQ7RTU9 1775 aa26.03■■□□□ 1.76
GPC1-206ENST00000455111 HNRNPMP52272 730 aaKnown RBP eCLIP26.03■■□□□ 1.76
GPC1-206ENST00000455111 ZNF777Q9ULD5 760 aaPredicted RBP26.03■■□□□ 1.76
GPC1-206ENST00000455111 MYT1LQ9UL68 1186 aa26.02■■□□□ 1.76
GPC1-206ENST00000455111 SUPT6HQ7KZ85 1726 aaKnown RBP26.01■■□□□ 1.75
GPC1-206ENST00000455111 ATP7AQ04656 1500 aa26■■□□□ 1.75
GPC1-206ENST00000455111 EHBP1L1Q8N3D4 1523 aa26■■□□□ 1.75
GPC1-206ENST00000455111 PLXNC1O60486 1568 aa25.99■■□□□ 1.75
GPC1-206ENST00000455111 KIAA1107Q9UPP5 1409 aa25.99■■□□□ 1.75
GPC1-206ENST00000455111 MTUS2Q5JR59 1369 aa25.97■■□□□ 1.75
GPC1-206ENST00000455111 CCNB3Q8WWL7 1395 aa25.97■■□□□ 1.75
GPC1-206ENST00000455111 ZNF644Q9H582 1327 aaPredicted RBP25.97■■□□□ 1.75
GPC1-206ENST00000455111 MBD5Q9P267 1494 aa25.95■■□□□ 1.74
GPC1-206ENST00000455111 CFDP1Q9UEE9 299 aaPredicted RBP25.94■■□□□ 1.74
GPC1-206ENST00000455111 SETD1BQ9UPS6 1966 aaKnown RBP25.93■■□□□ 1.74
GPC1-206ENST00000455111 FBXO41Q8TF61 875 aa25.93■■□□□ 1.74
GPC1-206ENST00000455111 PLEKHH2Q8IVE3 1493 aa25.92■■□□□ 1.74
GPC1-206ENST00000455111 SPAG9O60271 1321 aaKnown RBP25.92■■□□□ 1.74
GPC1-206ENST00000455111 MROH2AA6NES4 1674 aa25.92■■□□□ 1.74
GPC1-206ENST00000455111 CLTCQ00610 1675 aaKnown RBP25.9■■□□□ 1.74
GPC1-206ENST00000455111 ADGBQ8N7X0 1667 aa25.88■■□□□ 1.73
GPC1-206ENST00000455111 A2MP01023 1474 aa25.88■■□□□ 1.73
GPC1-206ENST00000455111 LOC105371045A0A1W2PR82 267 aa25.88■■□□□ 1.73
GPC1-206ENST00000455111 UHRF1BP1Q6BDS2 1440 aa25.88■■□□□ 1.73
GPC1-206ENST00000455111 NCOA2Q15596 1464 aa25.86■■□□□ 1.73
GPC1-206ENST00000455111 CNTLNQ9NXG0 1405 aa25.83■■□□□ 1.73
GPC1-206ENST00000455111 CAMSAP2Q08AD1 1489 aa25.8■■□□□ 1.72
GPC1-206ENST00000455111 ZMYM3Q14202 1370 aa25.79■■□□□ 1.72
GPC1-206ENST00000455111 VPS8Q8N3P4 1428 aa25.79■■□□□ 1.72
GPC1-206ENST00000455111 RTEL1-TNFRSF6BF6WH68 1400 aa25.76■■□□□ 1.71
GPC1-206ENST00000455111 MYO3AQ8NEV4 1616 aa25.76■■□□□ 1.71
GPC1-206ENST00000455111 LRRC9Q6ZRR7 1453 aa25.75■■□□□ 1.71
GPC1-206ENST00000455111 NPATQ14207 1427 aa25.75■■□□□ 1.71
GPC1-206ENST00000455111 CERKQ8TCT0 537 aa25.75■■□□□ 1.71
GPC1-206ENST00000455111 PTPRKQ15262 1439 aa25.74■■□□□ 1.71
GPC1-206ENST00000455111 ZNF142P52746 1687 aaPredicted RBP25.74■■□□□ 1.71
GPC1-206ENST00000455111 CCDC141Q6ZP82 1450 aa25.73■■□□□ 1.71
GPC1-206ENST00000455111 ESF1Q9H501 851 aaKnown RBP25.73■■□□□ 1.71
GPC1-206ENST00000455111 NCOA1Q15788 1441 aa25.72■■□□□ 1.71
GPC1-206ENST00000455111 CAMSAP1Q5T5Y3 1602 aa25.71■■□□□ 1.71
GPC1-206ENST00000455111 ARHGEF5Q12774 1597 aa25.71■■□□□ 1.71
GPC1-206ENST00000455111 KANK4Q5T7N3 995 aaPredicted RBP25.7■■□□□ 1.7
GPC1-206ENST00000455111 GGT6Q6P531 493 aa25.7■■□□□ 1.7
GPC1-206ENST00000455111 PTPRTO14522 1441 aa25.7■■□□□ 1.7
GPC1-206ENST00000455111 DHX29Q7Z478 1369 aaKnown RBP25.69■■□□□ 1.7
GPC1-206ENST00000455111 LTBP4Q8N2S1 1624 aa25.68■■□□□ 1.7
GPC1-206ENST00000455111 MAP3K1Q13233 1512 aa25.66■■□□□ 1.7
GPC1-206ENST00000455111 CEP170BQ9Y4F5 1589 aaPredicted RBP25.65■■□□□ 1.7
GPC1-206ENST00000455111 MAST1Q9Y2H9 1570 aa25.61■■□□□ 1.69
GPC1-206ENST00000455111 DMRT2Q9Y5R5 561 aa25.61■■□□□ 1.69
GPC1-206ENST00000455111 DNMT1P26358 1616 aaKnown RBP25.59■■□□□ 1.69
GPC1-206ENST00000455111 NCKAP5LQ9HCH0 1330 aa25.58■■□□□ 1.69
GPC1-206ENST00000455111 KDM5DQ9BY66 1539 aa25.58■■□□□ 1.68
GPC1-206ENST00000455111 PPP6R1Q9UPN7 881 aa25.57■■□□□ 1.68
GPC1-206ENST00000455111 TCOF1Q13428 1488 aaKnown RBP25.57■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms