RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 REM2Q8IYK8 340 aaPredicted RBP13.86□□□□□ -0.19
COL28A1-205ENST00000453441 ATP10BO94823 1461 aa13.85□□□□□ -0.19
COL28A1-205ENST00000453441 CCDC18Q5T9S5 1454 aa13.85□□□□□ -0.19
COL28A1-205ENST00000453441 PCF11O94913 1555 aaKnown RBP13.84□□□□□ -0.19
COL28A1-205ENST00000453441 ASXL2Q76L83 1435 aa13.83□□□□□ -0.2
COL28A1-205ENST00000453441 EPRSP07814 1512 aaKnown RBP13.83□□□□□ -0.2
COL28A1-205ENST00000453441 VPS8Q8N3P4 1428 aa13.82□□□□□ -0.2
COL28A1-205ENST00000453441 WDR7Q9Y4E6 1490 aa13.82□□□□□ -0.2
COL28A1-205ENST00000453441 SPDYE4A6NLX3 237 aa13.82□□□□□ -0.2
COL28A1-205ENST00000453441 ABCC10Q5T3U5 1492 aa13.81□□□□□ -0.2
COL28A1-205ENST00000453441 CDK11AQ9UQ88 783 aaPredicted RBP13.81□□□□□ -0.2
COL28A1-205ENST00000453441 GLI2P10070 1586 aa13.79□□□□□ -0.2
COL28A1-205ENST00000453441 DIP2BQ9P265 1576 aa13.79□□□□□ -0.2
COL28A1-205ENST00000453441 ATP1B4Q9UN42 357 aaPredicted RBP13.78□□□□□ -0.2
COL28A1-205ENST00000453441 PLEKHD1A6NEE1 506 aa13.77□□□□□ -0.21
COL28A1-205ENST00000453441 KIF13AQ9H1H9 1805 aa13.76□□□□□ -0.21
COL28A1-205ENST00000453441 CDK13Q14004 1512 aaKnown RBP13.75□□□□□ -0.21
COL28A1-205ENST00000453441 LRRIQ1Q96JM4 1722 aa13.75□□□□□ -0.21
COL28A1-205ENST00000453441 MAP3K1Q13233 1512 aa13.74□□□□□ -0.21
COL28A1-205ENST00000453441 ARID3CA6NKF2 412 aa13.73□□□□□ -0.21
COL28A1-205ENST00000453441 FAM69CQ0P6D2 419 aa13.73□□□□□ -0.21
COL28A1-205ENST00000453441 TROQ12816 1431 aaPredicted RBP13.73□□□□□ -0.21
COL28A1-205ENST00000453441 CFAP43Q8NDM7 1665 aa13.72□□□□□ -0.21
COL28A1-205ENST00000453441 CHRDL2Q6WN34 429 aa13.71□□□□□ -0.21
COL28A1-205ENST00000453441 SPDYE1Q8NFV5 336 aaPredicted RBP13.71□□□□□ -0.21
COL28A1-205ENST00000453441 ABCA9Q8IUA7 1624 aa13.71□□□□□ -0.22
COL28A1-205ENST00000453441 MAP3K4Q9Y6R4 1608 aa13.71□□□□□ -0.22
COL28A1-205ENST00000453441 KIF14Q15058 1648 aa13.7□□□□□ -0.22
COL28A1-205ENST00000453441 TIAM1Q13009 1591 aa13.69□□□□□ -0.22
COL28A1-205ENST00000453441 EHBP1L1Q8N3D4 1523 aa13.69□□□□□ -0.22
COL28A1-205ENST00000453441 PITPNM1O00562 1244 aa13.68□□□□□ -0.22
COL28A1-205ENST00000453441 KCNH8Q96L42 1107 aa13.68□□□□□ -0.22
COL28A1-205ENST00000453441 TEX14Q8IWB6 1497 aa13.67□□□□□ -0.22
COL28A1-205ENST00000453441 MAGI3Q5TCQ9 1506 aa13.67□□□□□ -0.22
COL28A1-205ENST00000453441 MTUS2Q5JR59 1369 aa13.67□□□□□ -0.22
COL28A1-205ENST00000453441 CD109Q6YHK3 1445 aa13.66□□□□□ -0.22
COL28A1-205ENST00000453441 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.64□□□□□ -0.23
COL28A1-205ENST00000453441 ARAP3Q8WWN8 1544 aa13.64□□□□□ -0.23
COL28A1-205ENST00000453441 PHLDB1Q86UU1 1377 aa13.64□□□□□ -0.23
COL28A1-205ENST00000453441 LRRC9Q6ZRR7 1453 aa13.62□□□□□ -0.23
COL28A1-205ENST00000453441 PPRC1Q5VV67 1664 aaKnown RBP13.62□□□□□ -0.23
COL28A1-205ENST00000453441 TTC37Q6PGP7 1564 aa13.62□□□□□ -0.23
COL28A1-205ENST00000453441 CFAP74Q9C0B2 1584 aa13.62□□□□□ -0.23
COL28A1-205ENST00000453441 MYO5CQ9NQX4 1742 aa13.61□□□□□ -0.23
COL28A1-205ENST00000453441 TSPOAP1O95153 1857 aa13.61□□□□□ -0.23
COL28A1-205ENST00000453441 SUPT6HQ7KZ85 1726 aaKnown RBP13.61□□□□□ -0.23
COL28A1-205ENST00000453441 PLCH2O75038 1416 aa13.6□□□□□ -0.23
COL28A1-205ENST00000453441 CLEC11AQ9Y240 323 aa13.6□□□□□ -0.23
COL28A1-205ENST00000453441 NEO1Q92859 1461 aa13.6□□□□□ -0.23
COL28A1-205ENST00000453441 FKBP8Q14318 412 aa13.59□□□□□ -0.23
COL28A1-205ENST00000453441 POTEHQ6S545 545 aa13.59□□□□□ -0.23
COL28A1-205ENST00000453441 PROM2Q8N271 834 aa13.58□□□□□ -0.24
COL28A1-205ENST00000453441 PREX2Q70Z35 1606 aa13.57□□□□□ -0.24
COL28A1-205ENST00000453441 CCNB3Q8WWL7 1395 aa13.57□□□□□ -0.24
COL28A1-205ENST00000453441 ITSN2Q9NZM3 1697 aa13.56□□□□□ -0.24
COL28A1-205ENST00000453441 STAG3Q9UJ98 1225 aa13.56□□□□□ -0.24
COL28A1-205ENST00000453441 FANCAO15360 1455 aa13.55□□□□□ -0.24
COL28A1-205ENST00000453441 NCOA2Q15596 1464 aa13.55□□□□□ -0.24
COL28A1-205ENST00000453441 EFCAB2Q5VUJ9 269 aa13.55□□□□□ -0.24
COL28A1-205ENST00000453441 CDC42BPAQ5VT25 1732 aa13.55□□□□□ -0.24
COL28A1-205ENST00000453441 ARHGAP5Q13017 1502 aa13.54□□□□□ -0.24
COL28A1-205ENST00000453441 GPATCH8Q9UKJ3 1502 aaKnown RBP13.54□□□□□ -0.24
COL28A1-205ENST00000453441 KDM6BO15054 1643 aa13.53□□□□□ -0.24
COL28A1-205ENST00000453441 CDC42BPBQ9Y5S2 1711 aa13.53□□□□□ -0.24
COL28A1-205ENST00000453441 KANK4Q5T7N3 995 aaPredicted RBP13.52□□□□□ -0.25
COL28A1-205ENST00000453441 AKNAQ7Z591 1439 aa13.52□□□□□ -0.25
COL28A1-205ENST00000453441 PLEKHH2Q8IVE3 1493 aa13.51□□□□□ -0.25
COL28A1-205ENST00000453441 FXR2P51116 673 aaKnown RBP eCLIP13.51□□□□□ -0.25
COL28A1-205ENST00000453441 CFDP1Q9UEE9 299 aaPredicted RBP13.5□□□□□ -0.25
COL28A1-205ENST00000453441 ADGRL1O94910 1474 aa13.49□□□□□ -0.25
COL28A1-205ENST00000453441 MIA2Q96PC5 1412 aa13.49□□□□□ -0.25
COL28A1-205ENST00000453441 PRR29P0C7W0 189 aa13.49□□□□□ -0.25
COL28A1-205ENST00000453441 MYOM3Q5VTT5 1437 aa13.48□□□□□ -0.25
COL28A1-205ENST00000453441 DENND4BO75064 1496 aaPredicted RBP13.48□□□□□ -0.25
COL28A1-205ENST00000453441 KIAA1107Q9UPP5 1409 aa13.47□□□□□ -0.25
COL28A1-205ENST00000453441 PIP4P2Q8N4L2 257 aa13.47□□□□□ -0.25
COL28A1-205ENST00000453441 ABCC1P33527 1531 aa13.47□□□□□ -0.25
COL28A1-205ENST00000453441 SCAPERQ9BY12 1400 aa13.45□□□□□ -0.26
COL28A1-205ENST00000453441 SAMD9LQ8IVG5 1584 aa13.45□□□□□ -0.26
COL28A1-205ENST00000453441 ZNF518AQ6AHZ1 1483 aa13.44□□□□□ -0.26
COL28A1-205ENST00000453441 POGZQ7Z3K3 1410 aa13.44□□□□□ -0.26
COL28A1-205ENST00000453441 ZMYM4Q5VZL5 1548 aa13.44□□□□□ -0.26
COL28A1-205ENST00000453441 COL17A1Q9UMD9 1497 aaPredicted RBP13.43□□□□□ -0.26
COL28A1-205ENST00000453441 RSPH4AQ5TD94 716 aa13.43□□□□□ -0.26
COL28A1-205ENST00000453441 RICTORQ6R327 1708 aa13.43□□□□□ -0.26
COL28A1-205ENST00000453441 MAGI2Q86UL8 1455 aa13.42□□□□□ -0.26
COL28A1-205ENST00000453441 CAMSAP2Q08AD1 1489 aa13.42□□□□□ -0.26
COL28A1-205ENST00000453441 FGD6Q6ZV73 1430 aa13.41□□□□□ -0.26
COL28A1-205ENST00000453441 ZNF777Q9ULD5 760 aaPredicted RBP13.41□□□□□ -0.26
COL28A1-205ENST00000453441 KDM5CP41229 1560 aa13.41□□□□□ -0.26
COL28A1-205ENST00000453441 FRMPD1Q5SYB0 1578 aa13.41□□□□□ -0.26
COL28A1-205ENST00000453441 SYCP2Q9BX26 1530 aa13.4□□□□□ -0.26
COL28A1-205ENST00000453441 TCOF1Q13428 1488 aaKnown RBP13.4□□□□□ -0.26
COL28A1-205ENST00000453441 ARHGEF5Q12774 1597 aa13.4□□□□□ -0.26
COL28A1-205ENST00000453441 PTPN23Q9H3S7 1636 aa13.39□□□□□ -0.27
COL28A1-205ENST00000453441 MLH3Q9UHC1 1453 aa13.38□□□□□ -0.27
COL28A1-205ENST00000453441 ARHGEF12Q9NZN5 1544 aa13.38□□□□□ -0.27
COL28A1-205ENST00000453441 CCDC141Q6ZP82 1450 aa13.37□□□□□ -0.27
COL28A1-205ENST00000453441 MBD5Q9P267 1494 aa13.37□□□□□ -0.27
COL28A1-205ENST00000453441 RAPGEF3O95398 923 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms