RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 CDC42BPBQ9Y5S2 1711 aa20.27■□□□□ 0.83
CPSF4-208ENST00000452047 SCAPERQ9BY12 1400 aa20.27■□□□□ 0.83
CPSF4-208ENST00000452047 MAGI2Q86UL8 1455 aa20.25■□□□□ 0.83
CPSF4-208ENST00000452047 PREX2Q70Z35 1606 aa20.25■□□□□ 0.83
CPSF4-208ENST00000452047 ARHGAP5Q13017 1502 aa20.25■□□□□ 0.83
CPSF4-208ENST00000452047 ZFYVE16Q7Z3T8 1539 aa20.25■□□□□ 0.83
CPSF4-208ENST00000452047 EFCAB2Q5VUJ9 269 aa20.24■□□□□ 0.83
CPSF4-208ENST00000452047 YEATS2Q9ULM3 1422 aa20.24■□□□□ 0.83
CPSF4-208ENST00000452047 SIGLEC1Q9BZZ2 1709 aa20.24■□□□□ 0.83
CPSF4-208ENST00000452047 CDC42BPAQ5VT25 1732 aa20.22■□□□□ 0.83
CPSF4-208ENST00000452047 HECW2Q9P2P5 1572 aa20.21■□□□□ 0.83
CPSF4-208ENST00000452047 MADDQ8WXG6 1647 aa20.2■□□□□ 0.82
CPSF4-208ENST00000452047 KDM5CP41229 1560 aa20.2■□□□□ 0.82
CPSF4-208ENST00000452047 CEP162Q5TB80 1403 aa20.19■□□□□ 0.82
CPSF4-208ENST00000452047 PTPRMP28827 1452 aa20.18■□□□□ 0.82
CPSF4-208ENST00000452047 ZNF518AQ6AHZ1 1483 aa20.18■□□□□ 0.82
CPSF4-208ENST00000452047 ABCC1P33527 1531 aa20.17■□□□□ 0.82
CPSF4-208ENST00000452047 ARID4BQ4LE39 1312 aaPredicted RBP20.16■□□□□ 0.82
CPSF4-208ENST00000452047 ITSN2Q9NZM3 1697 aa20.15■□□□□ 0.82
CPSF4-208ENST00000452047 RIMS1Q86UR5 1692 aaKnown RBP20.13■□□□□ 0.81
CPSF4-208ENST00000452047 ARHGEF12Q9NZN5 1544 aa20.12■□□□□ 0.81
CPSF4-208ENST00000452047 ATP10AO60312 1499 aa20.11■□□□□ 0.81
CPSF4-208ENST00000452047 C9orf84Q5VXU9 1444 aa20.1■□□□□ 0.81
CPSF4-208ENST00000452047 AFAP1Q8N556 730 aa20.1■□□□□ 0.81
CPSF4-208ENST00000452047 GPATCH8Q9UKJ3 1502 aaKnown RBP20.1■□□□□ 0.81
CPSF4-208ENST00000452047 SAMD9LQ8IVG5 1584 aa20.09■□□□□ 0.81
CPSF4-208ENST00000452047 DIP2CQ9Y2E4 1556 aa20.09■□□□□ 0.81
CPSF4-208ENST00000452047 TRAPPC8Q9Y2L5 1435 aa20.09■□□□□ 0.81
CPSF4-208ENST00000452047 MLH3Q9UHC1 1453 aa20.08■□□□□ 0.81
CPSF4-208ENST00000452047 ABCA6Q8N139 1617 aa20.08■□□□□ 0.8
CPSF4-208ENST00000452047 FER1L4A9Z1Z3 1794 aa20.07■□□□□ 0.8
CPSF4-208ENST00000452047 REREQ9P2R6 1566 aa20.07■□□□□ 0.8
CPSF4-208ENST00000452047 MTUS2Q5JR59 1369 aa20.07■□□□□ 0.8
CPSF4-208ENST00000452047 EHBP1L1Q8N3D4 1523 aa20.07■□□□□ 0.8
CPSF4-208ENST00000452047 KIDINS220Q9ULH0 1771 aa20.05■□□□□ 0.8
CPSF4-208ENST00000452047 SYCP2Q9BX26 1530 aa20.04■□□□□ 0.8
CPSF4-208ENST00000452047 TIAM1Q13009 1591 aa20.04■□□□□ 0.8
CPSF4-208ENST00000452047 LOC105371045A0A1W2PR82 267 aa20.02■□□□□ 0.8
CPSF4-208ENST00000452047 CCNB3Q8WWL7 1395 aa20.01■□□□□ 0.79
CPSF4-208ENST00000452047 MLECQ14165 292 aa19.99■□□□□ 0.79
CPSF4-208ENST00000452047 KIAA1107Q9UPP5 1409 aa19.99■□□□□ 0.79
CPSF4-208ENST00000452047 PLEKHH2Q8IVE3 1493 aa19.99■□□□□ 0.79
CPSF4-208ENST00000452047 LMTK3Q96Q04 1460 aa19.99■□□□□ 0.79
CPSF4-208ENST00000452047 ZNF777Q9ULD5 760 aaPredicted RBP19.98■□□□□ 0.79
CPSF4-208ENST00000452047 VPS8Q8N3P4 1428 aa19.98■□□□□ 0.79
CPSF4-208ENST00000452047 AGLP35573 1532 aa19.97■□□□□ 0.79
CPSF4-208ENST00000452047 ILDR1Q86SU0 546 aaPredicted RBP19.97■□□□□ 0.79
CPSF4-208ENST00000452047 CFDP1Q9UEE9 299 aaPredicted RBP19.97■□□□□ 0.79
CPSF4-208ENST00000452047 INO80Q9ULG1 1556 aaPredicted RBP19.96■□□□□ 0.79
CPSF4-208ENST00000452047 MYT1LQ9UL68 1186 aa19.96■□□□□ 0.79
CPSF4-208ENST00000452047 SUPT6HQ7KZ85 1726 aaKnown RBP19.95■□□□□ 0.78
CPSF4-208ENST00000452047 ATP7AQ04656 1500 aa19.93■□□□□ 0.78
CPSF4-208ENST00000452047 HNRNPMP52272 730 aaKnown RBP eCLIP19.93■□□□□ 0.78
CPSF4-208ENST00000452047 NCOA2Q15596 1464 aa19.92■□□□□ 0.78
CPSF4-208ENST00000452047 SPAG9O60271 1321 aaKnown RBP19.9■□□□□ 0.78
CPSF4-208ENST00000452047 MBD5Q9P267 1494 aa19.9■□□□□ 0.78
CPSF4-208ENST00000452047 PLXNC1O60486 1568 aa19.89■□□□□ 0.77
CPSF4-208ENST00000452047 ZNF644Q9H582 1327 aaPredicted RBP19.89■□□□□ 0.77
CPSF4-208ENST00000452047 LRRC9Q6ZRR7 1453 aa19.88■□□□□ 0.77
CPSF4-208ENST00000452047 MAP3K1Q13233 1512 aa19.87■□□□□ 0.77
CPSF4-208ENST00000452047 PLPPR3Q6T4P5 718 aa19.87■□□□□ 0.77
CPSF4-208ENST00000452047 C3P01024 1663 aa19.87■□□□□ 0.77
CPSF4-208ENST00000452047 PREX1Q8TCU6 1659 aa19.87■□□□□ 0.77
CPSF4-208ENST00000452047 CAMSAP2Q08AD1 1489 aa19.85■□□□□ 0.77
CPSF4-208ENST00000452047 ADGBQ8N7X0 1667 aa19.84■□□□□ 0.77
CPSF4-208ENST00000452047 CEBPAP49715 358 aaPredicted RBP19.83■□□□□ 0.77
CPSF4-208ENST00000452047 A2MP01023 1474 aa19.83■□□□□ 0.76
CPSF4-208ENST00000452047 MROH2AA6NES4 1674 aa19.81■□□□□ 0.76
CPSF4-208ENST00000452047 CCDC141Q6ZP82 1450 aa19.8■□□□□ 0.76
CPSF4-208ENST00000452047 RTEL1-TNFRSF6BF6WH68 1400 aa19.8■□□□□ 0.76
CPSF4-208ENST00000452047 CNTLNQ9NXG0 1405 aa19.8■□□□□ 0.76
CPSF4-208ENST00000452047 HSPA2P54652 639 aa19.8■□□□□ 0.76
CPSF4-208ENST00000452047 SETD1BQ9UPS6 1966 aaKnown RBP19.79■□□□□ 0.76
CPSF4-208ENST00000452047 ARHGEF5Q12774 1597 aa19.78■□□□□ 0.76
CPSF4-208ENST00000452047 KANK4Q5T7N3 995 aaPredicted RBP19.78■□□□□ 0.76
CPSF4-208ENST00000452047 CLTCQ00610 1675 aaKnown RBP19.75■□□□□ 0.75
CPSF4-208ENST00000452047 ESF1Q9H501 851 aaKnown RBP19.75■□□□□ 0.75
CPSF4-208ENST00000452047 UHRF1BP1Q6BDS2 1440 aa19.75■□□□□ 0.75
CPSF4-208ENST00000452047 RSPH4AQ5TD94 716 aa19.72■□□□□ 0.75
CPSF4-208ENST00000452047 MYOM3Q5VTT5 1437 aa19.72■□□□□ 0.75
CPSF4-208ENST00000452047 DHX29Q7Z478 1369 aaKnown RBP19.71■□□□□ 0.75
CPSF4-208ENST00000452047 MIA2Q96PC5 1412 aa19.71■□□□□ 0.75
CPSF4-208ENST00000452047 STRCQ7RTU9 1775 aa19.7■□□□□ 0.74
CPSF4-208ENST00000452047 NPATQ14207 1427 aa19.7■□□□□ 0.74
CPSF4-208ENST00000452047 MAST1Q9Y2H9 1570 aa19.7■□□□□ 0.74
CPSF4-208ENST00000452047 ZMYM3Q14202 1370 aa19.7■□□□□ 0.74
CPSF4-208ENST00000452047 GGT6Q6P531 493 aa19.66■□□□□ 0.74
CPSF4-208ENST00000452047 PPP6R1Q9UPN7 881 aa19.65■□□□□ 0.74
CPSF4-208ENST00000452047 FAM135AQ9P2D6 1515 aa19.64■□□□□ 0.73
CPSF4-208ENST00000452047 ZNF142P52746 1687 aaPredicted RBP19.63■□□□□ 0.73
CPSF4-208ENST00000452047 MYO3AQ8NEV4 1616 aa19.63■□□□□ 0.73
CPSF4-208ENST00000452047 PTPRKQ15262 1439 aa19.63■□□□□ 0.73
CPSF4-208ENST00000452047 CROCC2H7BZ55 1655 aa19.62■□□□□ 0.73
CPSF4-208ENST00000452047 TSPY4P0CV99 314 aa19.62■□□□□ 0.73
CPSF4-208ENST00000452047 TSPY10P0CW01 314 aa19.62■□□□□ 0.73
CPSF4-208ENST00000452047 PTPN23Q9H3S7 1636 aa19.62■□□□□ 0.73
CPSF4-208ENST00000452047 KDM5DQ9BY66 1539 aa19.61■□□□□ 0.73
CPSF4-208ENST00000452047 APLP2Q06481 763 aa19.61■□□□□ 0.73
CPSF4-208ENST00000452047 RNF17Q9BXT8 1623 aaKnown RBP19.61■□□□□ 0.73
CPSF4-208ENST00000452047 KIF3BO15066 747 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms