RNA–Protein interactions for RNA: ENST00000449062.1

RTFDC1-204, Transcript of Protein RTF2 homolog, humanhuman

TSL 5

Gene RTFDC1, Length 852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-204ENST00000449062 AFAP1Q8N556 730 aa22.47■■□□□ 1.19
RTFDC1-204ENST00000449062 MAGI2Q86UL8 1455 aa22.46■■□□□ 1.19
RTFDC1-204ENST00000449062 ARHGAP5Q13017 1502 aa22.46■■□□□ 1.19
RTFDC1-204ENST00000449062 ZMYM4Q5VZL5 1548 aa22.46■■□□□ 1.19
RTFDC1-204ENST00000449062 GPATCH8Q9UKJ3 1502 aaKnown RBP22.46■■□□□ 1.19
RTFDC1-204ENST00000449062 YEATS2Q9ULM3 1422 aa22.45■■□□□ 1.18
RTFDC1-204ENST00000449062 MTUS2Q5JR59 1369 aa22.44■■□□□ 1.18
RTFDC1-204ENST00000449062 VPS8Q8N3P4 1428 aa22.44■■□□□ 1.18
RTFDC1-204ENST00000449062 CDC42BPBQ9Y5S2 1711 aa22.44■■□□□ 1.18
RTFDC1-204ENST00000449062 ARHGEF12Q9NZN5 1544 aa22.43■■□□□ 1.18
RTFDC1-204ENST00000449062 PREX2Q70Z35 1606 aa22.4■■□□□ 1.18
RTFDC1-204ENST00000449062 ARHGEF40Q8TER5 1519 aa22.39■■□□□ 1.17
RTFDC1-204ENST00000449062 TRAPPC8Q9Y2L5 1435 aa22.39■■□□□ 1.17
RTFDC1-204ENST00000449062 ZNF518AQ6AHZ1 1483 aa22.38■■□□□ 1.17
RTFDC1-204ENST00000449062 CCNB3Q8WWL7 1395 aa22.38■■□□□ 1.17
RTFDC1-204ENST00000449062 CDC42BPAQ5VT25 1732 aa22.37■■□□□ 1.17
RTFDC1-204ENST00000449062 CFDP1Q9UEE9 299 aaPredicted RBP22.37■■□□□ 1.17
RTFDC1-204ENST00000449062 ZFYVE16Q7Z3T8 1539 aa22.36■■□□□ 1.17
RTFDC1-204ENST00000449062 ARID4BQ4LE39 1312 aaPredicted RBP22.35■■□□□ 1.17
RTFDC1-204ENST00000449062 KDM5CP41229 1560 aa22.35■■□□□ 1.17
RTFDC1-204ENST00000449062 ZNF777Q9ULD5 760 aaPredicted RBP22.35■■□□□ 1.17
RTFDC1-204ENST00000449062 ATP10AO60312 1499 aa22.34■■□□□ 1.17
RTFDC1-204ENST00000449062 ABCC1P33527 1531 aa22.34■■□□□ 1.17
RTFDC1-204ENST00000449062 EHBP1L1Q8N3D4 1523 aa22.33■■□□□ 1.17
RTFDC1-204ENST00000449062 HNRNPMP52272 730 aaKnown RBP eCLIP22.33■■□□□ 1.17
RTFDC1-204ENST00000449062 MLH3Q9UHC1 1453 aa22.33■■□□□ 1.16
RTFDC1-204ENST00000449062 ADAMTSL3P82987 1691 aa22.33■■□□□ 1.16
RTFDC1-204ENST00000449062 KIAA1107Q9UPP5 1409 aa22.32■■□□□ 1.16
RTFDC1-204ENST00000449062 KANK4Q5T7N3 995 aaPredicted RBP22.32■■□□□ 1.16
RTFDC1-204ENST00000449062 ZNF644Q9H582 1327 aaPredicted RBP22.31■■□□□ 1.16
RTFDC1-204ENST00000449062 TIAM1Q13009 1591 aa22.3■■□□□ 1.16
RTFDC1-204ENST00000449062 MAP3K1Q13233 1512 aa22.3■■□□□ 1.16
RTFDC1-204ENST00000449062 SAMD9LQ8IVG5 1584 aa22.29■■□□□ 1.16
RTFDC1-204ENST00000449062 SIGLEC1Q9BZZ2 1709 aa22.29■■□□□ 1.16
RTFDC1-204ENST00000449062 BCORL1Q5H9F3 1711 aa22.28■■□□□ 1.16
RTFDC1-204ENST00000449062 NCOA2Q15596 1464 aa22.28■■□□□ 1.16
RTFDC1-204ENST00000449062 LRRC9Q6ZRR7 1453 aa22.28■■□□□ 1.16
RTFDC1-204ENST00000449062 C9orf84Q5VXU9 1444 aa22.26■■□□□ 1.15
RTFDC1-204ENST00000449062 PTPRMP28827 1452 aa22.25■■□□□ 1.15
RTFDC1-204ENST00000449062 PLEKHH2Q8IVE3 1493 aa22.25■■□□□ 1.15
RTFDC1-204ENST00000449062 ITSN2Q9NZM3 1697 aa22.24■■□□□ 1.15
RTFDC1-204ENST00000449062 MBD5Q9P267 1494 aa22.23■■□□□ 1.15
RTFDC1-204ENST00000449062 SYCP2Q9BX26 1530 aa22.22■■□□□ 1.15
RTFDC1-204ENST00000449062 MYT1LQ9UL68 1186 aa22.22■■□□□ 1.15
RTFDC1-204ENST00000449062 SPAG9O60271 1321 aaKnown RBP22.22■■□□□ 1.15
RTFDC1-204ENST00000449062 HECW2Q9P2P5 1572 aa22.21■■□□□ 1.15
RTFDC1-204ENST00000449062 DIP2CQ9Y2E4 1556 aa22.21■■□□□ 1.15
RTFDC1-204ENST00000449062 MLECQ14165 292 aa22.21■■□□□ 1.15
RTFDC1-204ENST00000449062 MADDQ8WXG6 1647 aa22.19■■□□□ 1.14
RTFDC1-204ENST00000449062 KIDINS220Q9ULH0 1771 aa22.19■■□□□ 1.14
RTFDC1-204ENST00000449062 SUPT6HQ7KZ85 1726 aaKnown RBP22.18■■□□□ 1.14
RTFDC1-204ENST00000449062 REREQ9P2R6 1566 aa22.18■■□□□ 1.14
RTFDC1-204ENST00000449062 ABCA6Q8N139 1617 aa22.17■■□□□ 1.14
RTFDC1-204ENST00000449062 AGLP35573 1532 aa22.15■■□□□ 1.14
RTFDC1-204ENST00000449062 RSPH4AQ5TD94 716 aa22.14■■□□□ 1.13
RTFDC1-204ENST00000449062 APLP2Q06481 763 aa22.12■■□□□ 1.13
RTFDC1-204ENST00000449062 RTEL1-TNFRSF6BF6WH68 1400 aa22.11■■□□□ 1.13
RTFDC1-204ENST00000449062 ATP7AQ04656 1500 aa22.1■■□□□ 1.13
RTFDC1-204ENST00000449062 CAMSAP2Q08AD1 1489 aa22.09■■□□□ 1.13
RTFDC1-204ENST00000449062 INO80Q9ULG1 1556 aaPredicted RBP22.08■■□□□ 1.13
RTFDC1-204ENST00000449062 RIMS1Q86UR5 1692 aaKnown RBP22.07■■□□□ 1.12
RTFDC1-204ENST00000449062 MYOM3Q5VTT5 1437 aa22.07■■□□□ 1.12
RTFDC1-204ENST00000449062 MIA2Q96PC5 1412 aa22.07■■□□□ 1.12
RTFDC1-204ENST00000449062 CEBPAP49715 358 aaPredicted RBP22.06■■□□□ 1.12
RTFDC1-204ENST00000449062 A2MP01023 1474 aa22.05■■□□□ 1.12
RTFDC1-204ENST00000449062 CCDC141Q6ZP82 1450 aa22.04■■□□□ 1.12
RTFDC1-204ENST00000449062 DHX29Q7Z478 1369 aaKnown RBP22.03■■□□□ 1.12
RTFDC1-204ENST00000449062 ARHGEF5Q12774 1597 aa22.02■■□□□ 1.12
RTFDC1-204ENST00000449062 PLXNC1O60486 1568 aa22.01■■□□□ 1.11
RTFDC1-204ENST00000449062 TSPY4P0CV99 314 aa22.01■■□□□ 1.11
RTFDC1-204ENST00000449062 TSPY10P0CW01 314 aa22.01■■□□□ 1.11
RTFDC1-204ENST00000449062 PLPPR3Q6T4P5 718 aa22.01■■□□□ 1.11
RTFDC1-204ENST00000449062 FER1L4A9Z1Z3 1794 aa22■■□□□ 1.11
RTFDC1-204ENST00000449062 LMTK3Q96Q04 1460 aa21.99■■□□□ 1.11
RTFDC1-204ENST00000449062 PPP6R1Q9UPN7 881 aa21.97■■□□□ 1.11
RTFDC1-204ENST00000449062 GGT6Q6P531 493 aa21.95■■□□□ 1.1
RTFDC1-204ENST00000449062 CNTLNQ9NXG0 1405 aa21.95■■□□□ 1.1
RTFDC1-204ENST00000449062 ESF1Q9H501 851 aaKnown RBP21.94■■□□□ 1.1
RTFDC1-204ENST00000449062 ZMYM3Q14202 1370 aa21.93■■□□□ 1.1
RTFDC1-204ENST00000449062 FGD6Q6ZV73 1430 aa21.93■■□□□ 1.1
RTFDC1-204ENST00000449062 ADGBQ8N7X0 1667 aa21.92■■□□□ 1.1
RTFDC1-204ENST00000449062 HSPA2P54652 639 aa21.92■■□□□ 1.1
RTFDC1-204ENST00000449062 ABCC5O15440 1437 aa21.91■■□□□ 1.1
RTFDC1-204ENST00000449062 KIF3BO15066 747 aa21.91■■□□□ 1.1
RTFDC1-204ENST00000449062 TCOF1Q13428 1488 aaKnown RBP21.9■■□□□ 1.1
RTFDC1-204ENST00000449062 SETD1BQ9UPS6 1966 aaKnown RBP21.9■■□□□ 1.1
RTFDC1-204ENST00000449062 MAST1Q9Y2H9 1570 aa21.9■■□□□ 1.1
RTFDC1-204ENST00000449062 PTPN23Q9H3S7 1636 aa21.87■■□□□ 1.09
RTFDC1-204ENST00000449062 C3P01024 1663 aa21.85■■□□□ 1.09
RTFDC1-204ENST00000449062 DAPK1P53355 1430 aa21.83■■□□□ 1.09
RTFDC1-204ENST00000449062 NPATQ14207 1427 aa21.83■■□□□ 1.09
RTFDC1-204ENST00000449062 SHANK2Q9UPX8 1470 aa21.81■■□□□ 1.08
RTFDC1-204ENST00000449062 MROH2AA6NES4 1674 aa21.81■■□□□ 1.08
RTFDC1-204ENST00000449062 PTPRKQ15262 1439 aa21.8■■□□□ 1.08
RTFDC1-204ENST00000449062 RRP7BPQ9NSQ0 103 aa21.8■■□□□ 1.08
RTFDC1-204ENST00000449062 UHRF1BP1Q6BDS2 1440 aa21.79■■□□□ 1.08
RTFDC1-204ENST00000449062 CHIC2Q9UKJ5 165 aa21.78■■□□□ 1.08
RTFDC1-204ENST00000449062 WASHC2CQ9Y4E1 1318 aa21.78■■□□□ 1.08
RTFDC1-204ENST00000449062 DNMT1P26358 1616 aaKnown RBP21.77■■□□□ 1.08
RTFDC1-204ENST00000449062 KIF15Q9NS87 1388 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms